Non-Coding RNA Search

Ss1.1-Tra1-TCH01G050094.5

Sequence:


               
               CCAACCAGGGGAGACACACGGGCGACCCGGAAGGCGACACTCCAAAGCGGGGGTGAAGGG
GACCGATGGCGGAGGGAGCGGCGGAGGCCCCAGCAGAGAGTGGTGGTGGTGGTGGTGGTG
GCAACCCCGGAGCCGGCGAGCCAGAACGAGGGGTGACGCCCATTAAATCTCAATACCTCA
CCACCAAGGAGCAATTCCACGAATTCTTGGAAGCCAAAGGACGGGAGGAGCCCAGCCAGG
AAACCAAGGCAGGGGACCCTGATGACAATGACCTGGTTGAGCCTGAGGCCAAGCGTATCC
GACTGGAGGATGGGCAGACAAAGGACGGGCAGACAGAGGAGGCAGCCGAGCAGAGGGAGG
AGCCGCAGGTTCAGAAGAGGGCCCGGGGCCAGAACAAGAGCCGGCCTCATGTGAAGCCCA
CCCACTATGACAAGAACAGGCTCTGTCCCTCCCTGATCCAGGAATCAGCCTCTAAATGTT
TCTATGGTGACCGCTGCCGCTTCCTGCATGATGTGAGCCTCTACCTGGAGACCAAGCCGG
CTGACCTGGGACCCCGCTGTGTGCTCTTTGAGACCTTCGGCAGGTGCCCTTATGGCGTGA
CCTGCCGCTTTGCTGGGGCGCATCTGGGGCCCGAGGGCCAGAATCTGGTGCAGGAGGGGT
TGGTCCAGGCCCCAAACATCCGCAACGGCCTGGACAAGGCCCTGCAGCAGCAACTGCGAA
AGCGCAAGGTCTGCTTCGAGCGTTCGGAGCAGGCCCTGCGCCAACTAAGCAAGGGCCGGC
TGCCAGGCCCTACCCCCACCGCTGCTGAGCCTGAGGTCACAGAGGCTGATGGTGCCCCAG
AGCAAGATGGCTGTGATGCCCAACAGGCCTCCCATGGGCCACAACAGGCCCCTCCCAGTG
GCCCTTTAAGGACATGCGGGCCCCTGACAGATGAGGATGTAGTCAGGTTGCGGCCCTGTG
AGAAGCGGCGGCTGGACATCAGTGGGAAATTGTACCTGGCCCCCCTCACCACGTGCGGGA
ACCTACCCTTTCGGCGGATCTGTAAGCGCTTTGGGGCTGATGTGACTTGCGGGGAGATGG
CCGTGTGCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACCAGGGGAGACACACGGGCGACCCGGAAGGCGACACTCCAAAGCGGGGGTGAAGGG
GACCGATGGCGGAGGGAGCGGCGGAGGCCCCAGCAGAGAGTGGTGGTGGTGGTGGTGGTG
GCAACCCCGGAGCCGGCGAGCCAGAACGAGGGGTGACGCCCATTAAATCTCAATACCTCA
CCACCAAGGAGCAATTCCACGAATTCTTGGAAGCCAAAGGACGGGAGGAGCCCAGCCAGG
AAACCAAGGCAGGGGACCCTGATGACAATGACCTGGTTGAGCCTGAGGCCAAGCGTATCC
GACTGGAGGATGGGCAGACAAAGGACGGGCAGACAGAGGAGGCAGCCGAGCAGAGGGAGG
AGCCGCAGGTTCAGAAGAGGGCCCGGGGCCAGAACAAGAGCCGGCCTCATGTGAAGCCCA
CCCACTATGACAAGAACAGGCTCTGTCCCTCCCTGATCCAGGAATCAGCCTCTAAATGTT
TCTATGGTGACCGCTGCCGCTTCCTGCATGATGTGAGCCTCTACCTGGAGACCAAGCCGG
CTGACCTGGGACCCCGCTGTGTGCTCTTTGAGACCTTCGGCAGGTGCCCTTATGGCGTGA
CCTGCCGCTTTGCTGGGGCGCATCTGGGGCCCGAGGGCCAGAATCTGGTGCAGGAGGGGT
TGGTCCAGGCCCCAAACATCCGCAACGGCCTGGACAAGGCCCTGCAGCAGCAACTGCGAA
AGCGCAAGGTCTGCTTCGAGCGTTCGGAGCAGGCCCTGCGCCAACTAAGCAAGGGCCGGC
TGCCAGGCCCTACCCCCACCGCTGCTGAGCCTGAGGTCACAGAGGCTGATGGTGCCCCAG
AGCAAGATGGCTGTGATGCCCAACAGGCCTCCCATGGGCCACAACAGGCCCCTCCCAGTG
GCCCTTTAAGGACATGCGGGCCCCTGACAGATGAGGATGTAGTCAGGTTGCGGCCCTGTG
AGAAGCGGCGGCTGGACATCAGTGGGAAATTGTACCTGGCCCCCCTCACCACGTGCGGGA
ACCTACCCTTTCGGCGGATCTGTAAGCGCTTTGGGGCTGATGTGACTTGCGGGGAGATGG
CCGTGTGCACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30851162|gb|AAH52481.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30851162|gb|AAH52481.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               658-805, - strand, RNAz p=0.999219
               

               
               857-971, - strand, RNAz p=0.861625

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               658-805, - strand, RNAz p=0.999219
               

               
               857-971, - strand, RNAz p=0.861625

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-172, gnl|bosTau2|chr7 (13270738-13270905)
               

               
               4-172, gnl|canFam2|chr20 (57195692-57195436)
               

               
               4-172, gnl|echTel1|scaffold_183885 (3553-3791)
               

               
               4-172, gnl|hg17|chr19 (5742024-5742278)
               

               
               4-172, gnl|Hg17|chr19 (5742220-5742055)
               

               
               4-172, gnl|mm7|chr17 (54976317-54976073)
               

               
               4-172, gnl|Mm7|chr17 (54976129-54976282)
               

               
               4-172, gnl|monDom2|scaffold_85 (3690685-3690951)
               

               
               4-172, gnl|panTro1|chr20 (6068945-6069199)
               

               
               4-172, gnl|rheMac2|chr19 (5687405-5687659)
               

               
               4-172, gnl|rn3|chrUn (25017018-25017266)
               


               
               459-971, gnl|bosTau2|chr7 (13272158-13272673)
               

               
               459-971, gnl|Hg17|chr19 (5740733-5740218)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-172, gnl|bosTau2|chr7 (13270738-13270905)
               

               
               4-172, gnl|canFam2|chr20 (57195692-57195436)
               

               
               4-172, gnl|echTel1|scaffold_183885 (3553-3791)
               

               
               4-172, gnl|hg17|chr19 (5742024-5742278)
               

               
               4-172, gnl|Hg17|chr19 (5742220-5742055)
               

               
               4-172, gnl|mm7|chr17 (54976317-54976073)
               

               
               4-172, gnl|Mm7|chr17 (54976129-54976282)
               

               
               4-172, gnl|monDom2|scaffold_85 (3690685-3690951)
               

               
               4-172, gnl|panTro1|chr20 (6068945-6069199)
               

               
               4-172, gnl|rheMac2|chr19 (5687405-5687659)
               

               
               4-172, gnl|rn3|chrUn (25017018-25017266)
               


               
               459-971, gnl|bosTau2|chr7 (13272158-13272673)
               

               
               459-971, gnl|Hg17|chr19 (5740733-5740218)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	658-805, - strand, RNAz p=0.999219
	857-971, - strand, RNAz p=0.861625

	4-172, gnl\|bosTau2\|chr7 (13270738-13270905)
	4-172, gnl\|canFam2\|chr20 (57195692-57195436)
	4-172, gnl\|echTel1\|scaffold_183885 (3553-3791)
	4-172, gnl\|hg17\|chr19 (5742024-5742278)
	4-172, gnl\|Hg17\|chr19 (5742220-5742055)
	4-172, gnl\|mm7\|chr17 (54976317-54976073)
	4-172, gnl\|Mm7\|chr17 (54976129-54976282)
	4-172, gnl\|monDom2\|scaffold_85 (3690685-3690951)
	4-172, gnl\|panTro1\|chr20 (6068945-6069199)
	4-172, gnl\|rheMac2\|chr19 (5687405-5687659)
	4-172, gnl\|rn3\|chrUn (25017018-25017266)

	459-971, gnl\|bosTau2\|chr7 (13272158-13272673)
	459-971, gnl\|Hg17\|chr19 (5740733-5740218)