Ss1.1-Tra1-TCH01G050103.5
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CTTCCTGAGGAGGCAGCAGCAGAACAAAGCTAGCAGAGACTTCTTTTCTTTTCTTCGTCC
AGCCACGACTGCCTCAGCCTCTGCCTCCCGGCACCATCCTGGGGAAGGACAAGATGAAGT
GGACAGCGCTTGTTATCGTGGCCATCCTGCAGGCACAGTTTCCAATTACAGCTGCGCAGA
GCTTCGGCCTGCTTGATCCCAAACTCTGCTACCTGTTGGATGGGATCCTCTTCATCTATG
GTGTCATCATCACTGCCCTGTTCCTGAGAGAGAAGTTCAGCAGGAGCGCGGACGTCTCCG
CCTACCAGTCGGGCCAGAACCAGGTCTATAACGAACTCAATATCGGACGAAGAGAGGAGT
ATGCGGTCTTGGATAGAAGAGGGGGCCTGGATCCTGAGATGGGGGGAAAACCGCAGAGGA
AGAAGAATCCCCATGAAGTCGTGTACAATGAGCTGCGAAAAGACAAGATGGCAGAGGCCT
ACAGTGAGATTGGGATGAAGGGCGAGAACCAGCGGCGAAGAGGCAAGGGGCACGATGGCC
TTTACCAGGGACTCAGCACGGCCACCAAGGACACCTATGATGCCCTCCACATGCAGACCC
TGCCGCCTCGCTAACAGCACTAGAGATTTCACCACCCACAGGCCAGACCTGCAGACACCC
AGATTGTTCAAGACCCAAGAAAAGCATTTACAACCCGTTTTACTCTTATTTCTCTACCAC
CCAAGTATTCCTCTTTATGAACAGGATGCTTCCAGTTGTAACATTTGGTTATATTCCCAT
TCCAAACTGTCACAGAGTTCTTCCCTGGACGCTAGGAGGGAGTGTGTCCCCCAGGCCTTA
TCCTTGAGGAGCCCGCTGTGAGTGCAGCATGCTGTGTTCTGGTTTCTCAGAGGCCGTGGG
CCGGCCCAGCTCTGTGCAGCTCCAGGCTCTGACCTGGGAGACGGGCACCCTCCTTTTCAC
ACACACAGCTGGGTTCAGGCTAAATCCCCAAAGAAACCCCAGATGTTAGTGCACACTCAT
CATCTGTATTGTTCTGTCAGTACTGGAATGGCTTCGCTTCTGCTGTAAATTTGGCTTCTG
TTGTCAGCGAACCCTCTCATTTCTTGGTGACTGGGCCGGGGAGGCTGTTCTGCCACCCCG
TGAAGGATCCGGGCAGAGGGGAAGATGGGAGTTGGTAGCAGCCAGAGGAGGCTGAAGAGG
GAAGCAGTGGTGGCTCAGGGATGGGAGCAGGGAGCCAGAGGCCCGGGAGGGGGGCAGGAA
AGGACCCCCCCCTGCAATCAAGCATATGTTCCCCGTTATAGAACTTGTGTGCCAGACCCT
GTGGGGACCAGAAGATAAAGAAGCCTATCTTTGCCCCCGTGGAGCCCACACTCACAGGGC
AGCAAGTTGTGAAGAGTCTGGTGTGAGAGAATGTTAGGCACTTGCTCACCTCACACTGTG
TCCAAGACAAACCTGTCACGGGGAGACCTCCAAGGGAGACTCGGCACCACTCAGCCCCAG
AAAGATCCCACAGGACAGTGGCACGGAAGCGCCTTGGCCAACTTAGTGCGACAGTGCTGT
GTAATAAAGTGCATGTGGCCACGGATGGAAAACCCTCTCTGCTCTGCTTGGTCTTAATTT
ATACTGGTTTGCTAGAGCCTTAATCTTCTGCGTAATAAAGGCTTCAGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CTTCCTGAGGAGGCAGCAGCAGAACAAAGCTAGCAGAGACTTCTTTTCTTTTCTTCGTCC
AGCCACGACTGCCTCAGCCTCTGCCTCCCGGCACCATCCTGGGGAAGGACAAGATGAAGT
GGACAGCGCTTGTTATCGTGGCCATCCTGCAGGCACAGTTTCCAATTACAGCTGCGCAGA
GCTTCGGCCTGCTTGATCCCAAACTCTGCTACCTGTTGGATGGGATCCTCTTCATCTATG
GTGTCATCATCACTGCCCTGTTCCTGAGAGAGAAGTTCAGCAGGAGCGCGGACGTCTCCG
CCTACCAGTCGGGCCAGAACCAGGTCTATAACGAACTCAATATCGGACGAAGAGAGGAGT
ATGCGGTCTTGGATAGAAGAGGGGGCCTGGATCCTGAGATGGGGGGAAAACCGCAGAGGA
AGAAGAATCCCCATGAAGTCGTGTACAATGAGCTGCGAAAAGACAAGATGGCAGAGGCCT
ACAGTGAGATTGGGATGAAGGGCGAGAACCAGCGGCGAAGAGGCAAGGGGCACGATGGCC
TTTACCAGGGACTCAGCACGGCCACCAAGGACACCTATGATGCCCTCCACATGCAGACCC
TGCCGCCTCGCTAACAGCACTAGAGATTTCACCACCCACAGGCCAGACCTGCAGACACCC
AGATTGTTCAAGACCCAAGAAAAGCATTTACAACCCGTTTTACTCTTATTTCTCTACCAC
CCAAGTATTCCTCTTTATGAACAGGATGCTTCCAGTTGTAACATTTGGTTATATTCCCAT
TCCAAACTGTCACAGAGTTCTTCCCTGGACGCTAGGAGGGAGTGTGTCCCCCAGGCCTTA
TCCTTGAGGAGCCCGCTGTGAGTGCAGCATGCTGTGTTCTGGTTTCTCAGAGGCCGTGGG
CCGGCCCAGCTCTGTGCAGCTCCAGGCTCTGACCTGGGAGACGGGCACCCTCCTTTTCAC
ACACACAGCTGGGTTCAGGCTAAATCCCCAAAGAAACCCCAGATGTTAGTGCACACTCAT
CATCTGTATTGTTCTGTCAGTACTGGAATGGCTTCGCTTCTGCTGTAAATTTGGCTTCTG
TTGTCAGCGAACCCTCTCATTTCTTGGTGACTGGGCCGGGGAGGCTGTTCTGCCACCCCG
TGAAGGATCCGGGCAGAGGGGAAGATGGGAGTTGGTAGCAGCCAGAGGAGGCTGAAGAGG
GAAGCAGTGGTGGCTCAGGGATGGGAGCAGGGAGCCAGAGGCCCGGGAGGGGGGCAGGAA
AGGACCCCCCCCTGCAATCAAGCATATGTTCCCCGTTATAGAACTTGTGTGCCAGACCCT
GTGGGGACCAGAAGATAAAGAAGCCTATCTTTGCCCCCGTGGAGCCCACACTCACAGGGC
AGCAAGTTGTGAAGAGTCTGGTGTGAGAGAATGTTAGGCACTTGCTCACCTCACACTGTG
TCCAAGACAAACCTGTCACGGGGAGACCTCCAAGGGAGACTCGGCACCACTCAGCCCCAG
AAAGATCCCACAGGACAGTGGCACGGAAGCGCCTTGGCCAACTTAGTGCGACAGTGCTGT
GTAATAAAGTGCATGTGGCCACGGATGGAAAACCCTCTCTGCTCTGCTTGGTCTTAATTT
ATACTGGTTTGCTAGAGCCTTAATCTTCTGCGTAATAAAGGCTTCAGT
|
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1-171, gnl|bosTau2|chr3 (197390-197220) |
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1-171, gnl|canFam2|chr7 (33866780-33866390) |
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1-171, gnl|dasNov1|scaffold_1738 (40713-41095) |
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1-171, gnl|echTel1|scaffold_260959 (1286-873) |
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1-171, gnl|hg17|chr1 (164219262-164219657) |
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1-171, gnl|Hg17|chr1 (164219476-164219303) |
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1-171, gnl|loxAfr1|scaffold_22030 (4274-3881) |
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1-171, gnl|mm7|chr1 (165759642-165759239) |
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1-171, gnl|Mm7|chr1 (165759415-165759598) |
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1-171, gnl|monDom2|scaffold_16 (18367989-18368385) |
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1-171, gnl|oryCun1|scaffold_171936 (24254-23845) |
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1-171, gnl|panTro1|chr1 (146472369-146472762) |
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1-171, gnl|rheMac2|chr1 (197257860-197258253) |
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1-171, gnl|rn3|chr13 (81529797-81529385) |
| |
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541-1114, gnl|bosTau2|chr3 (114694-114109) |
|
541-1114, gnl|Hg17|chr1 (164132651-164132114) |
|
541-1114, gnl|Mm7|chr1 (165831708-165832244) |
| |
|
1208-1411, gnl|bosTau2|chr3 (114054-113849) |
|
1208-1411, gnl|Mm7|chr1 (165832310-165832513) |
| |
|
1416-1659, gnl|bosTau2|chr3 (113778-113539) |
|
1416-1659, gnl|Hg17|chr1 (164131806-164131553) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-171, gnl|bosTau2|chr3 (197390-197220) |
|
1-171, gnl|canFam2|chr7 (33866780-33866390) |
|
1-171, gnl|dasNov1|scaffold_1738 (40713-41095) |
|
1-171, gnl|echTel1|scaffold_260959 (1286-873) |
|
1-171, gnl|hg17|chr1 (164219262-164219657) |
|
1-171, gnl|Hg17|chr1 (164219476-164219303) |
|
1-171, gnl|loxAfr1|scaffold_22030 (4274-3881) |
|
1-171, gnl|mm7|chr1 (165759642-165759239) |
|
1-171, gnl|Mm7|chr1 (165759415-165759598) |
|
1-171, gnl|monDom2|scaffold_16 (18367989-18368385) |
|
1-171, gnl|oryCun1|scaffold_171936 (24254-23845) |
|
1-171, gnl|panTro1|chr1 (146472369-146472762) |
|
1-171, gnl|rheMac2|chr1 (197257860-197258253) |
|
1-171, gnl|rn3|chr13 (81529797-81529385) |
| |
|
541-1114, gnl|bosTau2|chr3 (114694-114109) |
|
541-1114, gnl|Hg17|chr1 (164132651-164132114) |
|
541-1114, gnl|Mm7|chr1 (165831708-165832244) |
| |
|
1208-1411, gnl|bosTau2|chr3 (114054-113849) |
|
1208-1411, gnl|Mm7|chr1 (165832310-165832513) |
| |
|
1416-1659, gnl|bosTau2|chr3 (113778-113539) |
|
1416-1659, gnl|Hg17|chr1 (164131806-164131553) |
|
cag (0.907167) |
|
med (0.697512) |
|
lnt (0.426925) |
|
cly (0.361925) |
|
fty (0.351679) |
|
csp (0.322373) |
|
cty (0.31224) |
|
fce (0.271592) |
|
tes (0.207814) |
|
ill (0.175593) |
|
cli (0.152812) |
|
eli (0.151814) |
|
fat (0.147427) |
|
pty (0.142714) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jej (0.0989218) |
|
cag (0.907167) |
|
med (0.697512) |
|
lnt (0.426925) |
|
cly (0.361925) |
|
fty (0.351679) |
|
csp (0.322373) |
|
cty (0.31224) |
|
fce (0.271592) |
|
tes (0.207814) |
|
ill (0.175593) |
|
cli (0.152812) |
|
eli (0.151814) |
|
fat (0.147427) |
|
pty (0.142714) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jej (0.0989218) |
