Non-Coding RNA Search

Ss1.1-Tra1-TCH01G070076.5

Sequence:


               
               GTCTTGGCACAGCCTGGGGGCTCTGATCCTTCAGCTCCTGCGCCATGGCCACACTGAGCG
TCAAGCCCAGTCAGCGCTTCCGGTTGCCGGACTGGCACACCAACAGCTACCTGTTGTCCA
CCAATGCTGAGCGGCAGCGAGATGCTTCACACCAGATTCGCCAGGAGGCACGGGTCCTCC
GCAACGAGACCAACAATCAGACCATTTGGGATGAACACGACAATAGGACTCGACTGGCAG
AGAGGATTGATACCGTCAACCGATGGAAGGAGATGCTGGACAAATGTCTGACAGACTTAG
ATGCTGAGATCGAGGCCCTGACACAGATGAAAGAGTCAGCAGAGCAAAACCTGCAGGCCA
AGAATCTGCCTCTGGATGTGGCGATTGAGTGCCTGACCCTGCGGGACTGTCGGCGCGACA
TTGATGTGGTGAAGGACCCCGTGGAGGAAGAGCTGCATAAAGAGGTGGAGGTCATTGAAG
CCACCAAGAAGGCCTTGCAGCAAAAGATCAGCCAGGCCTTTGAGAAGCTCTGCCTCCTGC
AGGAAGCTCGACAGCAGCTCAACGCTGACCATCGGGGCAAAATGGAGACATTAGACATCG
ACAGAGGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTGGCACAGCCTGGGGGCTCTGATCCTTCAGCTCCTGCGCCATGGCCACACTGAGCG
TCAAGCCCAGTCAGCGCTTCCGGTTGCCGGACTGGCACACCAACAGCTACCTGTTGTCCA
CCAATGCTGAGCGGCAGCGAGATGCTTCACACCAGATTCGCCAGGAGGCACGGGTCCTCC
GCAACGAGACCAACAATCAGACCATTTGGGATGAACACGACAATAGGACTCGACTGGCAG
AGAGGATTGATACCGTCAACCGATGGAAGGAGATGCTGGACAAATGTCTGACAGACTTAG
ATGCTGAGATCGAGGCCCTGACACAGATGAAAGAGTCAGCAGAGCAAAACCTGCAGGCCA
AGAATCTGCCTCTGGATGTGGCGATTGAGTGCCTGACCCTGCGGGACTGTCGGCGCGACA
TTGATGTGGTGAAGGACCCCGTGGAGGAAGAGCTGCATAAAGAGGTGGAGGTCATTGAAG
CCACCAAGAAGGCCTTGCAGCAAAAGATCAGCCAGGCCTTTGAGAAGCTCTGCCTCCTGC
AGGAAGCTCGACAGCAGCTCAACGCTGACCATCGGGGCAAAATGGAGACATTAGACATCG
ACAGAGGCTGCC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-200, gnl|bosTau2|chr3 (76798364-76798165)
               

               
               1-200, gnl|Hg17|chr1 (36219569-36219771)
               

               
               1-200, gnl|Mm7|chr4 (125769650-125769450)
               


               
               325-531, gnl|bosTau2|chr3 (76797767-76797561)
               

               
               325-531, gnl|Hg17|chr1 (36220528-36220734)
               

               
               325-531, gnl|Mm7|chr4 (125769084-125768878)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-200, gnl|bosTau2|chr3 (76798364-76798165)
               

               
               1-200, gnl|Hg17|chr1 (36219569-36219771)
               

               
               1-200, gnl|Mm7|chr4 (125769650-125769450)
               


               
               325-531, gnl|bosTau2|chr3 (76797767-76797561)
               

               
               325-531, gnl|Hg17|chr1 (36220528-36220734)
               

               
               325-531, gnl|Mm7|chr4 (125769084-125768878)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-200, gnl\|bosTau2\|chr3 (76798364-76798165)
	1-200, gnl\|Hg17\|chr1 (36219569-36219771)
	1-200, gnl\|Mm7\|chr4 (125769650-125769450)

	325-531, gnl\|bosTau2\|chr3 (76797767-76797561)
	325-531, gnl\|Hg17\|chr1 (36220528-36220734)
	325-531, gnl\|Mm7\|chr4 (125769084-125768878)