Ss1.1-Tra1-TCH01G070095.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCAAGAATGGAACTCTGTGGATCTCAGGACCCCCCTGTCTGACACTTTGCATCTCCCC GTGTGGGTAGACAACGACGGCAACTGTGCTGCTTTGGCAGAAAGGAAATTTGGCCAAGGA AAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGGAATTGGCGGAGGGATCATC CATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGCAGAGCTCGGCCACATTGTG GTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGGGTGTATTGAAGCCTATGCC TCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGACGAAGACCAGCTCTTGGTG GAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCTCCATCTCATCCAAGCTGCG AAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGCTGGAACAGCTTTAGGTCTG GGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGTGATCCTCTCTGGAGTCCTA GCCAGTCACTACATCCACACTGTCAAAGACGTCATCCGCCAGCAAGCCCTGTCCTCGGTT CAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGCCCTGCTTGGCGCCGCCAGC ATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTCCCGGCAGTGGACATGGACC GAGACTCAAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTAGATGAGCATTTCTTAAAAAA GCAAATTTGGTACTTAGATTTGTTATTTGGCAGGTGACTTTGGCAGGGATGTTGTTGCTT TTAGTCTCCTTTTCCAAAGTCCCTCTCTTCCCAACCCCCATTTTTGTAGCTGCTGCTCTT TCTGGGGTCCTTTCAGCTCAAACCTTGGAAGGACCAGTCACCATCTTCTGTACCAAAAGG ACCTGCAACAGTAGATGAGGAAGCCTTAGGACGCTGCTTTCCAGATGTAGTGCTTAGACC TACAGGCCTTGCTGGGGTGTGACCTTGATACCAGCGTTTGGCTCATTAATCCTTCTTCCT CTGACCCTAAATTCAGGACACATAAATGGATCGAGTCAGGGAACAGAAGGAAATCGCATC ATGAAAGGCTTATGTAAACTTTGTAAAGACCGTTTTATCAAGGTATTTTTTTTTTTTTAC AGTGCACCATTTGAAAAGCTTTGACATACGTACATACCTGTAAAACCATGACCACAATTA AGACTCAGATGAACTCTTCCACCCCCACGTGATACCTGTCGAAAGATGTTATTTGCTAGT ACTCTTGCAGAACCTTGAGCAACTTTAGACCAGGGATCTGAGTTACAGTGGCCTTATTGA CCTTGTCCTTACCTTCTTAAGGACAGCTGAGAAGCCACTAAGACTTAGAGCCTCTGAAAG ATTAGCCTTCCCAGGAGTTGCCACTGTCACGCAGTGGGTTAAGAATCTGACTGCAGCAGC TTGGGTCTCTGTGGAGGTGCAGGTTTGATCCCTGGCCAGTCACAGTGGGTTAAAGGATCT GGAGTTGCCATACCTGTCGCTTGGATTCAGTCCTTGGCCCTGGAACTTCCATATGCCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCAAGAATGGAACTCTGTGGATCTCAGGACCCCCCTGTCTGACACTTTGCATCTCCCC GTGTGGGTAGACAACGACGGCAACTGTGCTGCTTTGGCAGAAAGGAAATTTGGCCAAGGA AAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGGAATTGGCGGAGGGATCATC CATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGCAGAGCTCGGCCACATTGTG GTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGGGTGTATTGAAGCCTATGCC TCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGACGAAGACCAGCTCTTGGTG GAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCTCCATCTCATCCAAGCTGCG AAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGCTGGAACAGCTTTAGGTCTG GGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGTGATCCTCTCTGGAGTCCTA GCCAGTCACTACATCCACACTGTCAAAGACGTCATCCGCCAGCAAGCCCTGTCCTCGGTT CAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGCCCTGCTTGGCGCCGCCAGC ATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTCCCGGCAGTGGACATGGACC GAGACTCAAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTAGATGAGCATTTCTTAAAAAA GCAAATTTGGTACTTAGATTTGTTATTTGGCAGGTGACTTTGGCAGGGATGTTGTTGCTT TTAGTCTCCTTTTCCAAAGTCCCTCTCTTCCCAACCCCCATTTTTGTAGCTGCTGCTCTT TCTGGGGTCCTTTCAGCTCAAACCTTGGAAGGACCAGTCACCATCTTCTGTACCAAAAGG ACCTGCAACAGTAGATGAGGAAGCCTTAGGACGCTGCTTTCCAGATGTAGTGCTTAGACC TACAGGCCTTGCTGGGGTGTGACCTTGATACCAGCGTTTGGCTCATTAATCCTTCTTCCT CTGACCCTAAATTCAGGACACATAAATGGATCGAGTCAGGGAACAGAAGGAAATCGCATC ATGAAAGGCTTATGTAAACTTTGTAAAGACCGTTTTATCAAGGTATTTTTTTTTTTTTAC AGTGCACCATTTGAAAAGCTTTGACATACGTACATACCTGTAAAACCATGACCACAATTA AGACTCAGATGAACTCTTCCACCCCCACGTGATACCTGTCGAAAGATGTTATTTGCTAGT ACTCTTGCAGAACCTTGAGCAACTTTAGACCAGGGATCTGAGTTACAGTGGCCTTATTGA CCTTGTCCTTACCTTCTTAAGGACAGCTGAGAAGCCACTAAGACTTAGAGCCTCTGAAAG ATTAGCCTTCCCAGGAGTTGCCACTGTCACGCAGTGGGTTAAGAATCTGACTGCAGCAGC TTGGGTCTCTGTGGAGGTGCAGGTTTGATCCCTGGCCAGTCACAGTGGGTTAAAGGATCT GGAGTTGCCATACCTGTCGCTTGGATTCAGTCCTTGGCCCTGGAACTTCCATATGCCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 206-325, + strand, RNAz p=0.637449 | |
| 808-925, - strand, RNAz p=0.932488 | |
| 1043-1160, - strand, RNAz p=0.7957 | |
| 1309-1457, - strand, RNAz p=0.968392 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 206-325, + strand, RNAz p=0.637449 | |
| 808-925, - strand, RNAz p=0.932488 | |
| 1043-1160, - strand, RNAz p=0.7957 | |
| 1309-1457, - strand, RNAz p=0.968392 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 134-341, gnl|bosTau2|chr8 (31961910-31961701) | |
| 134-341, gnl|canFam2|chr11 (55722887-55723117) | |
| 134-341, gnl|danRer3|chr1 (7611854-7612050) | |
| 134-341, gnl|dasNov1|scaffold_849 (157333-157560) | |
| 134-341, gnl|echTel1|scaffold_237770 (777-548) | |
| 134-341, gnl|fr1|chrUn (93006452-93006652) | |
| 134-341, gnl|galGal2|chrZ (24098374-24098600) | |
| 134-341, gnl|hg17|chr9 (36209807-36210036) | |
| 134-341, gnl|Hg17|chr9 (36210046-36209837) | |
| 134-341, gnl|loxAfr1|scaffold_14902 (35485-35256) | |
| 134-341, gnl|mm7|chr4 (44054040-44054267) | |
| 134-341, gnl|Mm7|chr4 (44054281-44054070) | |
| 134-341, gnl|monDom2|scaffold_19 (8305111-8305327) | |
| 134-341, gnl|panTro1|chr11 (36824767-36824996) | |
| 134-341, gnl|rheMac2|chr15 (41250056-41249827) | |
| 134-341, gnl|rn3|chr5 (60509048-60509277) | |
| 134-341, gnl|tetNig1|chr18 (5231823-5232023) | |
| 134-341, gnl|xenTro1|scaffold_443 (1006456-1006253) | |
| 459-775, gnl|bosTau2|chr8 (31957410-31957094) | |
| 459-775, gnl|Hg17|chr9 (36207599-36207281) | |
| 459-775, gnl|Mm7|chr4 (44051169-44050857) | |
| 805-1457, gnl|bosTau2|chr8 (31957089-31956462) | |
| 805-1457, gnl|Hg17|chr9 (36207272-36205928) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-341, gnl|bosTau2|chr8 (31961910-31961701) | |
| 134-341, gnl|canFam2|chr11 (55722887-55723117) | |
| 134-341, gnl|danRer3|chr1 (7611854-7612050) | |
| 134-341, gnl|dasNov1|scaffold_849 (157333-157560) | |
| 134-341, gnl|echTel1|scaffold_237770 (777-548) | |
| 134-341, gnl|fr1|chrUn (93006452-93006652) | |
| 134-341, gnl|galGal2|chrZ (24098374-24098600) | |
| 134-341, gnl|hg17|chr9 (36209807-36210036) | |
| 134-341, gnl|Hg17|chr9 (36210046-36209837) | |
| 134-341, gnl|loxAfr1|scaffold_14902 (35485-35256) | |
| 134-341, gnl|mm7|chr4 (44054040-44054267) | |
| 134-341, gnl|Mm7|chr4 (44054281-44054070) | |
| 134-341, gnl|monDom2|scaffold_19 (8305111-8305327) | |
| 134-341, gnl|panTro1|chr11 (36824767-36824996) | |
| 134-341, gnl|rheMac2|chr15 (41250056-41249827) | |
| 134-341, gnl|rn3|chr5 (60509048-60509277) | |
| 134-341, gnl|tetNig1|chr18 (5231823-5232023) | |
| 134-341, gnl|xenTro1|scaffold_443 (1006456-1006253) | |
| 459-775, gnl|bosTau2|chr8 (31957410-31957094) | |
| 459-775, gnl|Hg17|chr9 (36207599-36207281) | |
| 459-775, gnl|Mm7|chr4 (44051169-44050857) | |
| 805-1457, gnl|bosTau2|chr8 (31957089-31956462) | |
| 805-1457, gnl|Hg17|chr9 (36207272-36205928) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| hyp (0.142837) | |
| che (0.136314) |