Ss1.1-Tra1-TCH01G070103.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CAAGAGGATCGGCTAAGCTGTTCAGTGAGACTTCCTCCAACTTTCTCAGGCTCTCTCGGG TTGTTGTTGCTTTTTTTTAACCTGGATGTGACGTACTAAAGGAGTCGACGGAAGTAGAAC CGAAGGGGTTCTAAAATGGCGAACCGTACGGTAAAGGATGCGCACAGCATCCACGGCACC AACCCTCAGTATCTGGTGGAGAAGATCATTCGGACTCGAATCTATGAGTCCAAGTATTGG AAGGAGGAGTGCTTTGGCCTTACGGCTGAACTTGTAGTTGATAAAGCCATGGAGTTAAGG TTCGTGGGTGGTGTCTATGGTGGCAACATAAAGCCAACTCCCTTCCTGTGTTTGACCTTG AAGATGCTTCAGATTCAGCCCGAGAAGGATATCATTGTAGAGTTTATCAAAAATGAAGAT TTCAAGTATGTCCGCATGTTGGGAGCACTTTACATGAGGTTGACAGGCACTGCCATTGAT TGCTACAAGTACTTGGAGCCTCTGTACAATGACTATCGAAAAATCAAGAGCCAGAACCGA AATGGGGAGTTTGAACTGATGCATGTAGATGAGTTTATTGATGAACTACTGCACAGTGAG AGAGTCTGTGATATCATTCTTCCCCGGCTACAGAAACGCTATGTACTTGAGGAAGCTGAG CAACTGGAGCCCCGGGTCAGTGCTCTAGAAGAGGACATGGATGATGTGGAGTCCAGTGAA GAGGAGGAAGAAGAAGACGAGAAGCTGGAGAGAGTGCCATCACCTGATCACCGCCGGAGA AGTTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTACGGTATCGGAGGAGCAGG AGTCGATCTCCCAGAAGGCGGAGTCGGTCTCCCAAAAGAAGAAGCCCCTCCCCTCGCCGC GAAAGGCATCGGAGCAAGAGTCCAAGACGTCACCGTAGCAGGTCTCGTGACAGACGGCAC AGATCCCGTTCCAAGTCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACTCAAAG TCTCCTGAAAGATCTAAGAAAAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAATGGACT CAGTCTGGTTTTAGTCCAGATGGCCTTCTGTGGAGGAGACAGCATCTGTGTGGGAGAACA AATGAAGATCTATTCCCCAGGCAGCTATGGGAATATTTTAGATTTGTTTTTTAACACCAA GTTTCTTCACTTTTTCTTTTTTTTTTTAATGAAAGAGGTACTGAGTTTTGTATCTCTTTT TGAATTGTAATCCACATATTTGAGGGATGATGCTTCCCAAAAGCTGCTTTTGACCTCTTT GTATGACCAACCTTGTTTGTACTCAAATTATGAGGGTAGAATGCATTTGGATAGAGGGTA CGAATGATGGGGAGGATGTGGCCCCCGGTGACCCTTTTGCTATTAAATTTGATATACCCA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CAAGAGGATCGGCTAAGCTGTTCAGTGAGACTTCCTCCAACTTTCTCAGGCTCTCTCGGG TTGTTGTTGCTTTTTTTTAACCTGGATGTGACGTACTAAAGGAGTCGACGGAAGTAGAAC CGAAGGGGTTCTAAAATGGCGAACCGTACGGTAAAGGATGCGCACAGCATCCACGGCACC AACCCTCAGTATCTGGTGGAGAAGATCATTCGGACTCGAATCTATGAGTCCAAGTATTGG AAGGAGGAGTGCTTTGGCCTTACGGCTGAACTTGTAGTTGATAAAGCCATGGAGTTAAGG TTCGTGGGTGGTGTCTATGGTGGCAACATAAAGCCAACTCCCTTCCTGTGTTTGACCTTG AAGATGCTTCAGATTCAGCCCGAGAAGGATATCATTGTAGAGTTTATCAAAAATGAAGAT TTCAAGTATGTCCGCATGTTGGGAGCACTTTACATGAGGTTGACAGGCACTGCCATTGAT TGCTACAAGTACTTGGAGCCTCTGTACAATGACTATCGAAAAATCAAGAGCCAGAACCGA AATGGGGAGTTTGAACTGATGCATGTAGATGAGTTTATTGATGAACTACTGCACAGTGAG AGAGTCTGTGATATCATTCTTCCCCGGCTACAGAAACGCTATGTACTTGAGGAAGCTGAG CAACTGGAGCCCCGGGTCAGTGCTCTAGAAGAGGACATGGATGATGTGGAGTCCAGTGAA GAGGAGGAAGAAGAAGACGAGAAGCTGGAGAGAGTGCCATCACCTGATCACCGCCGGAGA AGTTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTACGGTATCGGAGGAGCAGG AGTCGATCTCCCAGAAGGCGGAGTCGGTCTCCCAAAAGAAGAAGCCCCTCCCCTCGCCGC GAAAGGCATCGGAGCAAGAGTCCAAGACGTCACCGTAGCAGGTCTCGTGACAGACGGCAC AGATCCCGTTCCAAGTCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACTCAAAG TCTCCTGAAAGATCTAAGAAAAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAATGGACT CAGTCTGGTTTTAGTCCAGATGGCCTTCTGTGGAGGAGACAGCATCTGTGTGGGAGAACA AATGAAGATCTATTCCCCAGGCAGCTATGGGAATATTTTAGATTTGTTTTTTAACACCAA GTTTCTTCACTTTTTCTTTTTTTTTTTAATGAAAGAGGTACTGAGTTTTGTATCTCTTTT TGAATTGTAATCCACATATTTGAGGGATGATGCTTCCCAAAAGCTGCTTTTGACCTCTTT GTATGACCAACCTTGTTTGTACTCAAATTATGAGGGTAGAATGCATTTGGATAGAGGGTA CGAATGATGGGGAGGATGTGGCCCCCGGTGACCCTTTTGCTATTAAATTTGATATACCCA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
152-1298, + strand, RNAz p=0.767133 | |
1030-1148, - strand, RNAz p=0.996327 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
152-1298, + strand, RNAz p=0.767133 | |
1030-1148, - strand, RNAz p=0.996327 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
5' of NM_032284, + |
Aligned organism(s): 106 entry(ies) | More info |
Aligned organism(s): 106 entry(ies) | Help | Less info |
20-269, gnl|bosTau2|chr3 (63044961-63044723) | |
20-269, gnl|Hg17|chr1 (52582335-52582576) | |
20-269, gnl|Mm7|chr4 (107955668-107955420) | |
422-545, gnl|bosTau2|chr3 (63041549-63041426) | |
422-545, gnl|canFam2|chr15 (11969378-11969212) | |
422-545, gnl|canFam2|chr15 (11969339-11969220) | |
422-545, gnl|danRer3|chrUn (17054528-17054695) | |
422-545, gnl|danRer3|chrUn (17054475-17054687) | |
422-545, gnl|dasNov1|scaffold_36026 (3279-3160) | |
422-545, gnl|dasNov1|scaffold_7249 (115346-115174) | |
422-545, gnl|echTel1|scaffold_309347 (14699-14528) | |
422-545, gnl|echTel1|scaffold_309347 (14639-14536) | |
422-545, gnl|fr1|chrUn (272554855-272555014) | |
422-545, gnl|fr1|chrUn (272554794-272555006) | |
422-545, gnl|galGal2|chr8 (24638720-24638889) | |
422-545, gnl|galGal2|chr8 (24638768-24638881) | |
422-545, gnl|hg17|chr1 (52586220-52586390) | |
422-545, gnl|Hg17|chr1 (52586258-52586381) | |
422-545, gnl|hg17|chr10 (8243520-8243639) | |
422-545, gnl|mm7|chr10 (106524176-106524069) | |
422-545, gnl|mm7|chr4 (107951973-107951807) | |
422-545, gnl|Mm7|chr4 (107951933-107951810) | |
422-545, gnl|monDom2|scaffold_61 (9289624-9289743) | |
422-545, gnl|monDom2|scaffold_70 (1294780-1294603) | |
422-545, gnl|oryCun1|scaffold_178073 (15568-15400) | |
422-545, gnl|oryCun1|scaffold_178073 (15527-15408) | |
422-545, gnl|panTro1|chr1 (50811057-50811227) | |
422-545, gnl|panTro1|chr8 (8345698-8345817) | |
422-545, gnl|rheMac2|chr1 (55243578-55243748) | |
422-545, gnl|rheMac2|chr9 (8362572-8362691) | |
422-545, gnl|rn3|chr5 (129879660-129879494) | |
422-545, gnl|rn3|chr5 (129879617-129879498) | |
422-545, gnl|tetNig1|chrUn_random (117759236-117759383) | |
422-545, gnl|tetNig1|chrUn_random (117759178-117759375) | |
422-545, gnl|xenTro1|scaffold_197 (242487-242636) | |
422-545, gnl|xenTro1|scaffold_197 (242509-242628) | |
743-858, gnl|bosTau2|chr3 (63029190-63029075) | |
743-858, gnl|canFam2|chr15 (11961365-11961239) | |
743-858, gnl|canFam2|chr15 (11961355-11961234) | |
743-858, gnl|danRer3|chrUn (17057116-17057237) | |
743-858, gnl|danRer3|chrUn (17057133-17057236) | |
743-858, gnl|dasNov1|scaffold_36026 (2971-2863) | |
743-858, gnl|dasNov1|scaffold_7249 (83480-83354) | |
743-858, gnl|echTel1|scaffold_309347 (1211-1087) | |
743-858, gnl|echTel1|scaffold_309347 (1203-1088) | |
743-858, gnl|fr1|chrUn (272555425-272555545) | |
743-858, gnl|fr1|chrUn (272555441-272555544) | |
743-858, gnl|galGal2|chr8 (24640272-24640393) | |
743-858, gnl|galGal2|chr8 (24640277-24640394) | |
743-858, gnl|hg17|chr1 (52591561-52591687) | |
743-858, gnl|Hg17|chr1 (52591570-52591685) | |
743-858, gnl|hg17|chr10 (8243836-8243957) | |
743-858, gnl|mm7|chr10 (106523852-106523731) | |
743-858, gnl|mm7|chr4 (107944922-107944796) | |
743-858, gnl|Mm7|chr4 (107944911-107944796) | |
743-858, gnl|monDom2|scaffold_61 (9289944-9290083) | |
743-858, gnl|monDom2|scaffold_70 (1286482-1286361) | |
743-858, gnl|oryCun1|scaffold_102800 (502-623) | |
743-858, gnl|oryCun1|scaffold_178073 (1376-1250) | |
743-858, gnl|panTro1|chr1 (50816390-50816516) | |
743-858, gnl|panTro1|chr8 (8346014-8346135) | |
743-858, gnl|rheMac2|chr1 (55248774-55248900) | |
743-858, gnl|rheMac2|chr9 (8362888-8363008) | |
743-858, gnl|rn3|chr5 (129875456-129875330) | |
743-858, gnl|rn3|chr5 (129875446-129875328) | |
743-858, gnl|tetNig1|chrUn_random (117759997-117760108) | |
743-858, gnl|tetNig1|chrUn_random (117760004-117760107) | |
743-858, gnl|xenTro1|scaffold_197 (243429-243555) | |
743-858, gnl|xenTro1|scaffold_197 (243443-243560) | |
883-984, gnl|bosTau2|chr3 (63028361-63028260) | |
883-984, gnl|canFam2|chr15 (11960534-11960432) | |
883-984, gnl|canFam2|chr15 (11960534-11960442) | |
883-984, gnl|danRer3|chrUn (17057486-17057594) | |
883-984, gnl|dasNov1|scaffold_36026 (2845-2754) | |
883-984, gnl|dasNov1|scaffold_36026 (2845-2751) | |
883-984, gnl|echTel1|scaffold_309347 (389-287) | |
883-984, gnl|echTel1|scaffold_309347 (389-294) | |
883-984, gnl|fr1|chrUn (272555729-272555825) | |
883-984, gnl|fr1|chrUn (272555729-272555818) | |
883-984, gnl|galGal2|chr8 (24641013-24641114) | |
883-984, gnl|galGal2|chr8 (24641013-24641108) | |
883-984, gnl|hg17|chr1 (52592454-52592556) | |
883-984, gnl|Hg17|chr1 (52592453-52592554) | |
883-984, gnl|hg17|chr10 (8243976-8244071) | |
883-984, gnl|loxAfr1|scaffold_2538 (73854-73752) | |
883-984, gnl|loxAfr1|scaffold_2538 (73854-73762) | |
883-984, gnl|mm7|chr10 (106523715-106523620) | |
883-984, gnl|mm7|chr4 (107943962-107943860) | |
883-984, gnl|Mm7|chr4 (107943961-107943860) | |
883-984, gnl|monDom2|scaffold_61 (9290102-9290197) | |
883-984, gnl|monDom2|scaffold_70 (1286031-1285929) | |
883-984, gnl|oryCun1|scaffold_102800 (642-737) | |
883-984, gnl|oryCun1|scaffold_178073 (550-448) | |
883-984, gnl|panTro1|chr1 (50817283-50817385) | |
883-984, gnl|panTro1|chr8 (8346154-8346249) | |
883-984, gnl|rheMac2|chr1 (55249659-55249761) | |
883-984, gnl|rheMac2|chr9 (8363027-8363122) | |
883-984, gnl|rn3|chr5 (129874556-129874454) | |
883-984, gnl|rn3|chr5 (129874556-129874461) | |
883-984, gnl|tetNig1|chrUn_random (117760294-117760390) | |
883-984, gnl|tetNig1|chrUn_random (117760294-117760383) | |
883-984, gnl|xenTro1|scaffold_197 (245095-245198) | |
883-984, gnl|xenTro1|scaffold_197 (245096-245191) | |
1030-1440, gnl|bosTau2|chr3 (63026919-63026512) | |
1030-1440, gnl|Hg17|chr1 (52594339-52594707) | |
1030-1440, gnl|Mm7|chr4 (107941708-107941318) |
Aligned organism(s): 106 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
20-269, gnl|bosTau2|chr3 (63044961-63044723) | |
20-269, gnl|Hg17|chr1 (52582335-52582576) | |
20-269, gnl|Mm7|chr4 (107955668-107955420) | |
422-545, gnl|bosTau2|chr3 (63041549-63041426) | |
422-545, gnl|canFam2|chr15 (11969378-11969212) | |
422-545, gnl|canFam2|chr15 (11969339-11969220) | |
422-545, gnl|danRer3|chrUn (17054528-17054695) | |
422-545, gnl|danRer3|chrUn (17054475-17054687) | |
422-545, gnl|dasNov1|scaffold_36026 (3279-3160) | |
422-545, gnl|dasNov1|scaffold_7249 (115346-115174) | |
422-545, gnl|echTel1|scaffold_309347 (14699-14528) | |
422-545, gnl|echTel1|scaffold_309347 (14639-14536) | |
422-545, gnl|fr1|chrUn (272554855-272555014) | |
422-545, gnl|fr1|chrUn (272554794-272555006) | |
422-545, gnl|galGal2|chr8 (24638720-24638889) | |
422-545, gnl|galGal2|chr8 (24638768-24638881) | |
422-545, gnl|hg17|chr1 (52586220-52586390) | |
422-545, gnl|Hg17|chr1 (52586258-52586381) | |
422-545, gnl|hg17|chr10 (8243520-8243639) | |
422-545, gnl|mm7|chr10 (106524176-106524069) | |
422-545, gnl|mm7|chr4 (107951973-107951807) | |
422-545, gnl|Mm7|chr4 (107951933-107951810) | |
422-545, gnl|monDom2|scaffold_61 (9289624-9289743) | |
422-545, gnl|monDom2|scaffold_70 (1294780-1294603) | |
422-545, gnl|oryCun1|scaffold_178073 (15568-15400) | |
422-545, gnl|oryCun1|scaffold_178073 (15527-15408) | |
422-545, gnl|panTro1|chr1 (50811057-50811227) | |
422-545, gnl|panTro1|chr8 (8345698-8345817) | |
422-545, gnl|rheMac2|chr1 (55243578-55243748) | |
422-545, gnl|rheMac2|chr9 (8362572-8362691) | |
422-545, gnl|rn3|chr5 (129879660-129879494) | |
422-545, gnl|rn3|chr5 (129879617-129879498) | |
422-545, gnl|tetNig1|chrUn_random (117759236-117759383) | |
422-545, gnl|tetNig1|chrUn_random (117759178-117759375) | |
422-545, gnl|xenTro1|scaffold_197 (242487-242636) | |
422-545, gnl|xenTro1|scaffold_197 (242509-242628) | |
743-858, gnl|bosTau2|chr3 (63029190-63029075) | |
743-858, gnl|canFam2|chr15 (11961365-11961239) | |
743-858, gnl|canFam2|chr15 (11961355-11961234) | |
743-858, gnl|danRer3|chrUn (17057116-17057237) | |
743-858, gnl|danRer3|chrUn (17057133-17057236) | |
743-858, gnl|dasNov1|scaffold_36026 (2971-2863) | |
743-858, gnl|dasNov1|scaffold_7249 (83480-83354) | |
743-858, gnl|echTel1|scaffold_309347 (1211-1087) | |
743-858, gnl|echTel1|scaffold_309347 (1203-1088) | |
743-858, gnl|fr1|chrUn (272555425-272555545) | |
743-858, gnl|fr1|chrUn (272555441-272555544) | |
743-858, gnl|galGal2|chr8 (24640272-24640393) | |
743-858, gnl|galGal2|chr8 (24640277-24640394) | |
743-858, gnl|hg17|chr1 (52591561-52591687) | |
743-858, gnl|Hg17|chr1 (52591570-52591685) | |
743-858, gnl|hg17|chr10 (8243836-8243957) | |
743-858, gnl|mm7|chr10 (106523852-106523731) | |
743-858, gnl|mm7|chr4 (107944922-107944796) | |
743-858, gnl|Mm7|chr4 (107944911-107944796) | |
743-858, gnl|monDom2|scaffold_61 (9289944-9290083) | |
743-858, gnl|monDom2|scaffold_70 (1286482-1286361) | |
743-858, gnl|oryCun1|scaffold_102800 (502-623) | |
743-858, gnl|oryCun1|scaffold_178073 (1376-1250) | |
743-858, gnl|panTro1|chr1 (50816390-50816516) | |
743-858, gnl|panTro1|chr8 (8346014-8346135) | |
743-858, gnl|rheMac2|chr1 (55248774-55248900) | |
743-858, gnl|rheMac2|chr9 (8362888-8363008) | |
743-858, gnl|rn3|chr5 (129875456-129875330) | |
743-858, gnl|rn3|chr5 (129875446-129875328) | |
743-858, gnl|tetNig1|chrUn_random (117759997-117760108) | |
743-858, gnl|tetNig1|chrUn_random (117760004-117760107) | |
743-858, gnl|xenTro1|scaffold_197 (243429-243555) | |
743-858, gnl|xenTro1|scaffold_197 (243443-243560) | |
883-984, gnl|bosTau2|chr3 (63028361-63028260) | |
883-984, gnl|canFam2|chr15 (11960534-11960432) | |
883-984, gnl|canFam2|chr15 (11960534-11960442) | |
883-984, gnl|danRer3|chrUn (17057486-17057594) | |
883-984, gnl|dasNov1|scaffold_36026 (2845-2754) | |
883-984, gnl|dasNov1|scaffold_36026 (2845-2751) | |
883-984, gnl|echTel1|scaffold_309347 (389-287) | |
883-984, gnl|echTel1|scaffold_309347 (389-294) | |
883-984, gnl|fr1|chrUn (272555729-272555825) | |
883-984, gnl|fr1|chrUn (272555729-272555818) | |
883-984, gnl|galGal2|chr8 (24641013-24641114) | |
883-984, gnl|galGal2|chr8 (24641013-24641108) | |
883-984, gnl|hg17|chr1 (52592454-52592556) | |
883-984, gnl|Hg17|chr1 (52592453-52592554) | |
883-984, gnl|hg17|chr10 (8243976-8244071) | |
883-984, gnl|loxAfr1|scaffold_2538 (73854-73752) | |
883-984, gnl|loxAfr1|scaffold_2538 (73854-73762) | |
883-984, gnl|mm7|chr10 (106523715-106523620) | |
883-984, gnl|mm7|chr4 (107943962-107943860) | |
883-984, gnl|Mm7|chr4 (107943961-107943860) | |
883-984, gnl|monDom2|scaffold_61 (9290102-9290197) | |
883-984, gnl|monDom2|scaffold_70 (1286031-1285929) | |
883-984, gnl|oryCun1|scaffold_102800 (642-737) | |
883-984, gnl|oryCun1|scaffold_178073 (550-448) | |
883-984, gnl|panTro1|chr1 (50817283-50817385) | |
883-984, gnl|panTro1|chr8 (8346154-8346249) | |
883-984, gnl|rheMac2|chr1 (55249659-55249761) | |
883-984, gnl|rheMac2|chr9 (8363027-8363122) | |
883-984, gnl|rn3|chr5 (129874556-129874454) | |
883-984, gnl|rn3|chr5 (129874556-129874461) | |
883-984, gnl|tetNig1|chrUn_random (117760294-117760390) | |
883-984, gnl|tetNig1|chrUn_random (117760294-117760383) | |
883-984, gnl|xenTro1|scaffold_197 (245095-245198) | |
883-984, gnl|xenTro1|scaffold_197 (245096-245191) | |
1030-1440, gnl|bosTau2|chr3 (63026919-63026512) | |
1030-1440, gnl|Hg17|chr1 (52594339-52594707) | |
1030-1440, gnl|Mm7|chr4 (107941708-107941318) |
Expressed library(ies): 10 entry(ies) | More info |
Expressed library(ies): 10 entry(ies) | Help | Less info |
nlu (0.383362) | |
sag (0.36543) | |
ste (0.270416) | |
pgl (0.236967) | |
cmu (0.186393) | |
ill (0.175593) | |
ssp (0.13552) | |
cov (0.132153) | |
med (0.116252) | |
cty (0.10408) |
Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nlu (0.383362) | |
sag (0.36543) | |
ste (0.270416) | |
pgl (0.236967) | |
cmu (0.186393) | |
ill (0.175593) | |
ssp (0.13552) | |
cov (0.132153) | |
med (0.116252) | |
cty (0.10408) |