Ss1.1-Tra1-TCH01G080060.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCTGCTGGAGTCAGGACTATCCACCCACTGACACCCAGCCAGCTATGGGCCAGGATT ATTACGCTGTGCTCCAGATCACTCGCAATTCAGAGGATGCCCAGATCAAGAACGCGTACC GGAAACTTGCTCTCAAGAACCACCCGTTGAGGTCCGTCGAGCCATCCTCGGCAGAGACCT TCAGGCAGATCGCAGAGGCCTACGATGTGCTGAGCGACCCTGTGAAAAGAGGCATTTATG ACAAGTTCGGAGAGGAGGGCCTGAAGGGCGGGATTCCCCTGGAGTTTGGATCGCAGACCC CATGGACGACTGGTTACGTCTTCCACGGCAACCCTGAAAAGGTTTTCCACGAGTTCTTCG GCGGAGACAACCCCTTTAATGAGTTTTTTGATGCAGAAGGAAATGAGGTGGATCTTAACT TTGGGGGGCTCCGGGGCCGCGGGGTCAAGAAACAGGACCCCCCCATCGAGCGAGACCTCT ACTTGTCTCTGGAGGACTTGTTCTTCGGCTGCACCAAGAAAATTAAGATCTCCCGAAGGG TGCTGAACGAGGACGGGTTCTCCTCTACCATCAAGGACAAGATCCTCACCATTGACGTGA AGCCTGGGTGGAGGCAGGGCACCCGAATCACCTTTGAGAAGGAAGGGGACCAGGGTCCCA ACATCATCCCCGCCGACATCATCTTCATCGTCAAGGAGAAACTACACCCTCGCTTCCGCA GGGAGAATGACGACCTGTTTTTCGTGAACGCCATCCCCTTGGGCAAGGCTCTGACCTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCTGCTGGAGTCAGGACTATCCACCCACTGACACCCAGCCAGCTATGGGCCAGGATT ATTACGCTGTGCTCCAGATCACTCGCAATTCAGAGGATGCCCAGATCAAGAACGCGTACC GGAAACTTGCTCTCAAGAACCACCCGTTGAGGTCCGTCGAGCCATCCTCGGCAGAGACCT TCAGGCAGATCGCAGAGGCCTACGATGTGCTGAGCGACCCTGTGAAAAGAGGCATTTATG ACAAGTTCGGAGAGGAGGGCCTGAAGGGCGGGATTCCCCTGGAGTTTGGATCGCAGACCC CATGGACGACTGGTTACGTCTTCCACGGCAACCCTGAAAAGGTTTTCCACGAGTTCTTCG GCGGAGACAACCCCTTTAATGAGTTTTTTGATGCAGAAGGAAATGAGGTGGATCTTAACT TTGGGGGGCTCCGGGGCCGCGGGGTCAAGAAACAGGACCCCCCCATCGAGCGAGACCTCT ACTTGTCTCTGGAGGACTTGTTCTTCGGCTGCACCAAGAAAATTAAGATCTCCCGAAGGG TGCTGAACGAGGACGGGTTCTCCTCTACCATCAAGGACAAGATCCTCACCATTGACGTGA AGCCTGGGTGGAGGCAGGGCACCCGAATCACCTTTGAGAAGGAAGGGGACCAGGGTCCCA ACATCATCCCCGCCGACATCATCTTCATCGTCAAGGAGAAACTACACCCTCGCTTCCGCA GGGAGAATGACGACCTGTTTTTCGTGAACGCCATCCCCTTGGGCAAGGCTCTGACCTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 259-381, + strand, RNAz p=0.862875 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 259-381, + strand, RNAz p=0.862875 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 7-118, gnl|bosTau2|chr15 (42233688-42233799) | |
| 7-118, gnl|canFam2|chr21 (27330412-27330232) | |
| 7-118, gnl|danRer3|chr10 (33122262-33122467) | |
| 7-118, gnl|echTel1|scaffold_13533 (2424-2599) | |
| 7-118, gnl|hg17|chr11 (73339651-73339837) | |
| 7-118, gnl|Hg17|chr11 (73339718-73339833) | |
| 7-118, gnl|loxAfr1|scaffold_127714 (489-301) | |
| 7-118, gnl|mm7|chr7 (96561105-96560929) | |
| 7-118, gnl|Mm7|chr7 (96561040-96560931) | |
| 7-118, gnl|monDom2|scaffold_74 (3510513-3510314) | |
| 7-118, gnl|oryCun1|scaffold_110248 (12715-12898) | |
| 7-118, gnl|panTro1|chr9 (74621422-74621608) | |
| 7-118, gnl|rn3|chr1 (158024761-158024585) | |
| 220-381, gnl|bosTau2|chr15 (42238857-42239018) | |
| 220-381, gnl|Hg17|chr11 (73348187-73348348) | |
| 220-381, gnl|Mm7|chr7 (96557097-96556936) | |
| 650-768, gnl|bosTau2|chr15 (42244851-42244969) | |
| 650-768, gnl|canFam2|chr21 (27320019-27319875) | |
| 650-768, gnl|danRer3|chr10 (33125350-33125469) | |
| 650-768, gnl|dasNov1|scaffold_234355 (421-564) | |
| 650-768, gnl|echTel1|scaffold_315570 (133848-133703) | |
| 650-768, gnl|fr1|chrUn (77457992-77457850) | |
| 650-768, gnl|galGal2|chr1 (187173926-187173783) | |
| 650-768, gnl|hg17|chr11 (73357014-73357158) | |
| 650-768, gnl|Hg17|chr11 (73357034-73357152) | |
| 650-768, gnl|loxAfr1|scaffold_191235 (549-693) | |
| 650-768, gnl|mm7|chr7 (96550887-96550743) | |
| 650-768, gnl|Mm7|chr7 (96550865-96550747) | |
| 650-768, gnl|monDom2|scaffold_74 (3499763-3499629) | |
| 650-768, gnl|oryCun1|scaffold_215438 (33050-33194) | |
| 650-768, gnl|rn3|chr1 (158012909-158012765) | |
| 650-768, gnl|tetNig1|chr4 (3934914-3935030) | |
| 650-768, gnl|xenTro1|scaffold_1234 (26318-26440) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-118, gnl|bosTau2|chr15 (42233688-42233799) | |
| 7-118, gnl|canFam2|chr21 (27330412-27330232) | |
| 7-118, gnl|danRer3|chr10 (33122262-33122467) | |
| 7-118, gnl|echTel1|scaffold_13533 (2424-2599) | |
| 7-118, gnl|hg17|chr11 (73339651-73339837) | |
| 7-118, gnl|Hg17|chr11 (73339718-73339833) | |
| 7-118, gnl|loxAfr1|scaffold_127714 (489-301) | |
| 7-118, gnl|mm7|chr7 (96561105-96560929) | |
| 7-118, gnl|Mm7|chr7 (96561040-96560931) | |
| 7-118, gnl|monDom2|scaffold_74 (3510513-3510314) | |
| 7-118, gnl|oryCun1|scaffold_110248 (12715-12898) | |
| 7-118, gnl|panTro1|chr9 (74621422-74621608) | |
| 7-118, gnl|rn3|chr1 (158024761-158024585) | |
| 220-381, gnl|bosTau2|chr15 (42238857-42239018) | |
| 220-381, gnl|Hg17|chr11 (73348187-73348348) | |
| 220-381, gnl|Mm7|chr7 (96557097-96556936) | |
| 650-768, gnl|bosTau2|chr15 (42244851-42244969) | |
| 650-768, gnl|canFam2|chr21 (27320019-27319875) | |
| 650-768, gnl|danRer3|chr10 (33125350-33125469) | |
| 650-768, gnl|dasNov1|scaffold_234355 (421-564) | |
| 650-768, gnl|echTel1|scaffold_315570 (133848-133703) | |
| 650-768, gnl|fr1|chrUn (77457992-77457850) | |
| 650-768, gnl|galGal2|chr1 (187173926-187173783) | |
| 650-768, gnl|hg17|chr11 (73357014-73357158) | |
| 650-768, gnl|Hg17|chr11 (73357034-73357152) | |
| 650-768, gnl|loxAfr1|scaffold_191235 (549-693) | |
| 650-768, gnl|mm7|chr7 (96550887-96550743) | |
| 650-768, gnl|Mm7|chr7 (96550865-96550747) | |
| 650-768, gnl|monDom2|scaffold_74 (3499763-3499629) | |
| 650-768, gnl|oryCun1|scaffold_215438 (33050-33194) | |
| 650-768, gnl|rn3|chr1 (158012909-158012765) | |
| 650-768, gnl|tetNig1|chr4 (3934914-3935030) | |
| 650-768, gnl|xenTro1|scaffold_1234 (26318-26440) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |