Ss1.1-Tra1-TCH01G080074.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCCGCACAAGCCGCCTTCCAGCGGGGCTCGCCGTGGCGCCGGCTGGATGCCCTGAGC CGTGGCCGGCTGCTGCACCAGCTGGCAGACCTGGTGGAGCGGGACCGCACCATCCTGGCC ACCCTGGAAACGATGGACACAGGGAAGCCTTTCCTTCATGCCTTTTTCATTGACCTGGAG GGCTGTATCAAAACCCTCCGGTACTTTGCAGGGTGGGCAGACAAAATTCAGGGCAAGACC ATCCCCACAGATGACAATGTGGTGTGTTTCACCAGGCACGAACCCATAGGTGTGTGTGGG GCCATCACTCCTTGGAACTTCCCTCTGCTTATGCTGGTGTGGAAGCTGGCACCCGCTCTC TGCTGTGGGAACACAGTGGTCGTGAAGCCAGCAGAGCAGACACCCCTCACCGCCCTCCAT CTGGGCTCTCTGATCAGGGAGGTGGGATTCCCTCCAGGCGTGGTGAACATTGTGCCGGGA TTCGGGCCCACGGTGGGAGCTGCAATTTCTTCTCACCCTCAGATCAACAAGATAGCCTTC ACGGGGTCCACAGAGGTTGGAAAGCTAGTTAAAGAAGCTGCCTCCCGAAGCAACCTGAAG AGGGTGACACTGGAGCTTGGCGGGAAAAACCCTTGTATTGTGTGTGCGGATGCGGACCTG GACTTGGCAGTGGAGTGCGCCCACCAGGGAGTGTTCTTCAACCAAGGCCAGTGTTGCACA GCCGCCTCCAGGGTGTTCGTGGAGGAGCAGGTTTACAGTGAGTTTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCCGCACAAGCCGCCTTCCAGCGGGGCTCGCCGTGGCGCCGGCTGGATGCCCTGAGC CGTGGCCGGCTGCTGCACCAGCTGGCAGACCTGGTGGAGCGGGACCGCACCATCCTGGCC ACCCTGGAAACGATGGACACAGGGAAGCCTTTCCTTCATGCCTTTTTCATTGACCTGGAG GGCTGTATCAAAACCCTCCGGTACTTTGCAGGGTGGGCAGACAAAATTCAGGGCAAGACC ATCCCCACAGATGACAATGTGGTGTGTTTCACCAGGCACGAACCCATAGGTGTGTGTGGG GCCATCACTCCTTGGAACTTCCCTCTGCTTATGCTGGTGTGGAAGCTGGCACCCGCTCTC TGCTGTGGGAACACAGTGGTCGTGAAGCCAGCAGAGCAGACACCCCTCACCGCCCTCCAT CTGGGCTCTCTGATCAGGGAGGTGGGATTCCCTCCAGGCGTGGTGAACATTGTGCCGGGA TTCGGGCCCACGGTGGGAGCTGCAATTTCTTCTCACCCTCAGATCAACAAGATAGCCTTC ACGGGGTCCACAGAGGTTGGAAAGCTAGTTAAAGAAGCTGCCTCCCGAAGCAACCTGAAG AGGGTGACACTGGAGCTTGGCGGGAAAAACCCTTGTATTGTGTGTGCGGATGCGGACCTG GACTTGGCAGTGGAGTGCGCCCACCAGGGAGTGTTCTTCAACCAAGGCCAGTGTTGCACA GCCGCCTCCAGGGTGTTCGTGGAGGAGCAGGTTTACAGTGAGTTTGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-119, gnl|bosTau2|chr21 (3881645-3881527) | |
| 1-119, gnl|canFam2|chr3 (43018335-43018178) | |
| 1-119, gnl|danRer3|chrUn (71156969-71156816) | |
| 1-119, gnl|dasNov1|scaffold_2017 (67604-67761) | |
| 1-119, gnl|echTel1|scaffold_312259 (75256-75099) | |
| 1-119, gnl|fr1|chrUn (227062604-227062451) | |
| 1-119, gnl|hg17|chr15 (99245294-99245451) | |
| 1-119, gnl|Hg17|chr15 (99245321-99245439) | |
| 1-119, gnl|loxAfr1|scaffold_23814 (19395-19238) | |
| 1-119, gnl|mm7|chr7 (62277218-62277061) | |
| 1-119, gnl|Mm7|chr7 (62277189-62277071) | |
| 1-119, gnl|monDom2|scaffold_12 (59687078-59686921) | |
| 1-119, gnl|oryCun1|scaffold_176895 (25838-25995) | |
| 1-119, gnl|panTro1|chr16 (100397458-100397615) | |
| 1-119, gnl|rheMac2|chr7 (81015622-81015779) | |
| 1-119, gnl|rn3|chr1 (120952554-120952397) | |
| 1-119, gnl|tetNig1|chrUn_random (32677024-32676872) | |
| 1-119, gnl|xenTro1|scaffold_208 (1148511-1148359) | |
| 121-254, gnl|bosTau2|chr21 (3876941-3876808) | |
| 121-254, gnl|Hg17|chr15 (99250238-99250371) | |
| 121-254, gnl|Mm7|chr7 (62270997-62270864) | |
| 313-443, gnl|bosTau2|chr10 (34309091-34309221) | |
| 313-443, gnl|Hg17|chr15 (56072563-56072433) | |
| 313-443, gnl|Mm7|chr9 (71298150-71298280) | |
| 554-657, gnl|bosTau2|chr21 (3870507-3870404) | |
| 554-657, gnl|canFam2|chr3 (43006172-43006046) | |
| 554-657, gnl|danRer3|chrUn (71127836-71127725) | |
| 554-657, gnl|dasNov1|scaffold_2017 (82369-82489) | |
| 554-657, gnl|echTel1|scaffold_161080 (9271-9380) | |
| 554-657, gnl|fr1|chrUn (81455135-81455258) | |
| 554-657, gnl|galGal2|chr10 (18150037-18150148) | |
| 554-657, gnl|hg17|chr15 (99255809-99255935) | |
| 554-657, gnl|Hg17|chr15 (99255809-99255912) | |
| 554-657, gnl|loxAfr1|scaffold_30176 (38345-38240) | |
| 554-657, gnl|mm7|chr7 (62265874-62265762) | |
| 554-657, gnl|Mm7|chr7 (62265872-62265769) | |
| 554-657, gnl|monDom2|scaffold_12 (59666080-59665965) | |
| 554-657, gnl|oryCun1|scaffold_83095 (461-577) | |
| 554-657, gnl|panTro1|chr16 (100408386-100408512) | |
| 554-657, gnl|rheMac2|chr7 (81026341-81026466) | |
| 554-657, gnl|rn3|chr1 (120940875-120940763) | |
| 554-657, gnl|tetNig1|chrUn_random (32670134-32670023) | |
| 554-657, gnl|xenTro1|scaffold_208 (1140030-1139918) | |
| 663-768, gnl|bosTau2|chr21 (3868136-3868031) | |
| 663-768, gnl|canFam2|chr3 (43003553-43003362) | |
| 663-768, gnl|danRer3|chrUn (71126715-71126515) | |
| 663-768, gnl|dasNov1|scaffold_2017 (84855-85044) | |
| 663-768, gnl|echTel1|scaffold_179287 (2080-2266) | |
| 663-768, gnl|fr1|chrUn (81455783-81455983) | |
| 663-768, gnl|galGal2|chr10 (18151166-18151357) | |
| 663-768, gnl|hg17|chr15 (99258290-99258492) | |
| 663-768, gnl|Hg17|chr15 (99258307-99258412) | |
| 663-768, gnl|loxAfr1|scaffold_30176 (38239-38055) | |
| 663-768, gnl|mm7|chr7 (62264129-62263938) | |
| 663-768, gnl|Mm7|chr7 (62264121-62264016) | |
| 663-768, gnl|monDom2|scaffold_12 (59663496-59663291) | |
| 663-768, gnl|oryCun1|scaffold_176895 (38261-38462) | |
| 663-768, gnl|panTro1|chr16 (100410848-100411050) | |
| 663-768, gnl|rheMac2|chr7 (81028823-81029025) | |
| 663-768, gnl|rn3|chr1 (120939133-120938942) | |
| 663-768, gnl|tetNig1|chrUn_random (32669595-32669432) | |
| 663-768, gnl|xenTro1|scaffold_208 (1139261-1139071) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-119, gnl|bosTau2|chr21 (3881645-3881527) | |
| 1-119, gnl|canFam2|chr3 (43018335-43018178) | |
| 1-119, gnl|danRer3|chrUn (71156969-71156816) | |
| 1-119, gnl|dasNov1|scaffold_2017 (67604-67761) | |
| 1-119, gnl|echTel1|scaffold_312259 (75256-75099) | |
| 1-119, gnl|fr1|chrUn (227062604-227062451) | |
| 1-119, gnl|hg17|chr15 (99245294-99245451) | |
| 1-119, gnl|Hg17|chr15 (99245321-99245439) | |
| 1-119, gnl|loxAfr1|scaffold_23814 (19395-19238) | |
| 1-119, gnl|mm7|chr7 (62277218-62277061) | |
| 1-119, gnl|Mm7|chr7 (62277189-62277071) | |
| 1-119, gnl|monDom2|scaffold_12 (59687078-59686921) | |
| 1-119, gnl|oryCun1|scaffold_176895 (25838-25995) | |
| 1-119, gnl|panTro1|chr16 (100397458-100397615) | |
| 1-119, gnl|rheMac2|chr7 (81015622-81015779) | |
| 1-119, gnl|rn3|chr1 (120952554-120952397) | |
| 1-119, gnl|tetNig1|chrUn_random (32677024-32676872) | |
| 1-119, gnl|xenTro1|scaffold_208 (1148511-1148359) | |
| 121-254, gnl|bosTau2|chr21 (3876941-3876808) | |
| 121-254, gnl|Hg17|chr15 (99250238-99250371) | |
| 121-254, gnl|Mm7|chr7 (62270997-62270864) | |
| 313-443, gnl|bosTau2|chr10 (34309091-34309221) | |
| 313-443, gnl|Hg17|chr15 (56072563-56072433) | |
| 313-443, gnl|Mm7|chr9 (71298150-71298280) | |
| 554-657, gnl|bosTau2|chr21 (3870507-3870404) | |
| 554-657, gnl|canFam2|chr3 (43006172-43006046) | |
| 554-657, gnl|danRer3|chrUn (71127836-71127725) | |
| 554-657, gnl|dasNov1|scaffold_2017 (82369-82489) | |
| 554-657, gnl|echTel1|scaffold_161080 (9271-9380) | |
| 554-657, gnl|fr1|chrUn (81455135-81455258) | |
| 554-657, gnl|galGal2|chr10 (18150037-18150148) | |
| 554-657, gnl|hg17|chr15 (99255809-99255935) | |
| 554-657, gnl|Hg17|chr15 (99255809-99255912) | |
| 554-657, gnl|loxAfr1|scaffold_30176 (38345-38240) | |
| 554-657, gnl|mm7|chr7 (62265874-62265762) | |
| 554-657, gnl|Mm7|chr7 (62265872-62265769) | |
| 554-657, gnl|monDom2|scaffold_12 (59666080-59665965) | |
| 554-657, gnl|oryCun1|scaffold_83095 (461-577) | |
| 554-657, gnl|panTro1|chr16 (100408386-100408512) | |
| 554-657, gnl|rheMac2|chr7 (81026341-81026466) | |
| 554-657, gnl|rn3|chr1 (120940875-120940763) | |
| 554-657, gnl|tetNig1|chrUn_random (32670134-32670023) | |
| 554-657, gnl|xenTro1|scaffold_208 (1140030-1139918) | |
| 663-768, gnl|bosTau2|chr21 (3868136-3868031) | |
| 663-768, gnl|canFam2|chr3 (43003553-43003362) | |
| 663-768, gnl|danRer3|chrUn (71126715-71126515) | |
| 663-768, gnl|dasNov1|scaffold_2017 (84855-85044) | |
| 663-768, gnl|echTel1|scaffold_179287 (2080-2266) | |
| 663-768, gnl|fr1|chrUn (81455783-81455983) | |
| 663-768, gnl|galGal2|chr10 (18151166-18151357) | |
| 663-768, gnl|hg17|chr15 (99258290-99258492) | |
| 663-768, gnl|Hg17|chr15 (99258307-99258412) | |
| 663-768, gnl|loxAfr1|scaffold_30176 (38239-38055) | |
| 663-768, gnl|mm7|chr7 (62264129-62263938) | |
| 663-768, gnl|Mm7|chr7 (62264121-62264016) | |
| 663-768, gnl|monDom2|scaffold_12 (59663496-59663291) | |
| 663-768, gnl|oryCun1|scaffold_176895 (38261-38462) | |
| 663-768, gnl|panTro1|chr16 (100410848-100411050) | |
| 663-768, gnl|rheMac2|chr7 (81028823-81029025) | |
| 663-768, gnl|rn3|chr1 (120939133-120938942) | |
| 663-768, gnl|tetNig1|chrUn_random (32669595-32669432) | |
| 663-768, gnl|xenTro1|scaffold_208 (1139261-1139071) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| eep (0.122564) |