Ss1.1-Tra1-TCH01G110064.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTCCCCTCTGCGGCCACCGGGTACTAGAAGCAGCCCCGGGCGGCGGTGCGACGGTCCC CGCCATGTCTGCAGCCATGAGGCAGAGGTTCGACCAATTCCTGCACCAGAAAAACTACCT GACTGACATCTTGGCCAAGATCGAGGCCAAGACCGGCGTGAACCGGAGCTACATAGCGCT AGGTGTCATCGGGCTGGTGGCCTTGTACCTGGTGTTTGGTTATGGAGCCTCTCTCCTCTG CAATCTGATAGGATTTGGCTACCCAGCCTACGTCTCAATTAAAGCCATAGAGAGTCCCAA CAAAGAAGATGATACCCAGTGGCTGACCTACTGGGTAGTGTATGGTGTGTTCAGCATTGC CGAATTCTTCTCTGACCTCTTCCTGTCATGGTTCCCCTTCTACTACATGCTGAAGTGCGG CTTCCTGCTGTGGTGCATGGCTCCCAGCCCCGCCAACGGAGCAGACCTGCTCTACCAGCG CATCATCCGGCCCTTCTTCCTGAAGCACGAATCTCAGGTAGACAATGTGGTGAGTGACTT GAAGGACAAAGCCAAAGAGACGGCGGATGCCATCACTAAGGAAGCCAAGAAAGCCGCCGT GAATTTATTGGGTGAGGAGAAGAAGAGCACCTAAACCACTGGCTGGATGAAAGCTTCCTG CTCTCCCTGTACCTTCCTATTAGAGCTCGATGTTATATTAGGAACTGTGGTAAAATAATT TGAATAATGTTGCCTTGGAAACATTTTTGATATATATAAAAAAAGGAATATGTTGTAAGA TTTTTTGCTTACTTTTACTGTCTATATACATAGGGACAGTGTCCAAGTTTTTGGAAAGTA GATTTTGCCTCTGGGTAGGAAAAGACTTATGTTACCATGTAGGAAATATGAACTTCAAAT TAAATTATAATATCCCATGGGCCTTGTACCTCGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTCCCCTCTGCGGCCACCGGGTACTAGAAGCAGCCCCGGGCGGCGGTGCGACGGTCCC CGCCATGTCTGCAGCCATGAGGCAGAGGTTCGACCAATTCCTGCACCAGAAAAACTACCT GACTGACATCTTGGCCAAGATCGAGGCCAAGACCGGCGTGAACCGGAGCTACATAGCGCT AGGTGTCATCGGGCTGGTGGCCTTGTACCTGGTGTTTGGTTATGGAGCCTCTCTCCTCTG CAATCTGATAGGATTTGGCTACCCAGCCTACGTCTCAATTAAAGCCATAGAGAGTCCCAA CAAAGAAGATGATACCCAGTGGCTGACCTACTGGGTAGTGTATGGTGTGTTCAGCATTGC CGAATTCTTCTCTGACCTCTTCCTGTCATGGTTCCCCTTCTACTACATGCTGAAGTGCGG CTTCCTGCTGTGGTGCATGGCTCCCAGCCCCGCCAACGGAGCAGACCTGCTCTACCAGCG CATCATCCGGCCCTTCTTCCTGAAGCACGAATCTCAGGTAGACAATGTGGTGAGTGACTT GAAGGACAAAGCCAAAGAGACGGCGGATGCCATCACTAAGGAAGCCAAGAAAGCCGCCGT GAATTTATTGGGTGAGGAGAAGAAGAGCACCTAAACCACTGGCTGGATGAAAGCTTCCTG CTCTCCCTGTACCTTCCTATTAGAGCTCGATGTTATATTAGGAACTGTGGTAAAATAATT TGAATAATGTTGCCTTGGAAACATTTTTGATATATATAAAAAAAGGAATATGTTGTAAGA TTTTTTGCTTACTTTTACTGTCTATATACATAGGGACAGTGTCCAAGTTTTTGGAAAGTA GATTTTGCCTCTGGGTAGGAAAAGACTTATGTTACCATGTAGGAAATATGAACTTCAAAT TAAATTATAATATCCCATGGGCCTTGTACCTCGGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 278-406, gnl|bosTau2|chr7 (28992753-28992625) | |
| 278-406, gnl|canFam2|chr20 (60506786-60506627) | |
| 278-406, gnl|danRer3|chr15 (5038885-5039059) | |
| 278-406, gnl|dasNov1|scaffold_107186 (3330-3478) | |
| 278-406, gnl|echTel1|scaffold_98936 (5307-5439) | |
| 278-406, gnl|fr1|chrUn (171802334-171802176) | |
| 278-406, gnl|galGal2|chrZ (18973636-18973802) | |
| 278-406, gnl|hg17|chr19 (1446458-1446621) | |
| 278-406, gnl|Hg17|chr19 (1446469-1446597) | |
| 278-406, gnl|mm7|chr10 (80116073-80116238) | |
| 278-406, gnl|Mm7|chr10 (80116083-80116211) | |
| 278-406, gnl|monDom2|scaffold_75 (5578347-5578177) | |
| 278-406, gnl|rheMac2|chr19 (1262612-1262772) | |
| 278-406, gnl|rn3|chr7 (10888429-10888274) | |
| 278-406, gnl|tetNig1|chrUn_random (6047247-6047087) | |
| 278-406, gnl|xenTro1|scaffold_198 (1201508-1201347) | |
| 411-584, gnl|bosTau2|chr10 (9506600-9506427) | |
| 411-584, gnl|canFam2|chr3 (3115104-3114913) | |
| 411-584, gnl|danRer3|chr24 (29062994-29062809) | |
| 411-584, gnl|echTel1|scaffold_73485 (1230-1420) | |
| 411-584, gnl|fr1|chrUn (171801846-171802031) | |
| 411-584, gnl|galGal2|chr10_random (1706885-1706697) | |
| 411-584, gnl|hg17|chr5 (112250600-112250795) | |
| 411-584, gnl|Hg17|chr5 (112250784-112250611) | |
| 411-584, gnl|mm7|chr18 (34725089-34725274) | |
| 411-584, gnl|Mm7|chr18 (34725273-34725100) | |
| 411-584, gnl|monDom2|scaffold_55 (491345-491153) | |
| 411-584, gnl|oryCun1|scaffold_83931 (3467-3662) | |
| 411-584, gnl|panTro1|chr4 (118378312-118378507) | |
| 411-584, gnl|rheMac2|chr6 (109210981-109211174) | |
| 411-584, gnl|rn3|chr18 (26845138-26845323) | |
| 411-584, gnl|tetNig1|chrUn_random (162344375-162344559) | |
| 411-584, gnl|xenTro1|scaffold_198 (1199718-1199909) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 278-406, gnl|bosTau2|chr7 (28992753-28992625) | |
| 278-406, gnl|canFam2|chr20 (60506786-60506627) | |
| 278-406, gnl|danRer3|chr15 (5038885-5039059) | |
| 278-406, gnl|dasNov1|scaffold_107186 (3330-3478) | |
| 278-406, gnl|echTel1|scaffold_98936 (5307-5439) | |
| 278-406, gnl|fr1|chrUn (171802334-171802176) | |
| 278-406, gnl|galGal2|chrZ (18973636-18973802) | |
| 278-406, gnl|hg17|chr19 (1446458-1446621) | |
| 278-406, gnl|Hg17|chr19 (1446469-1446597) | |
| 278-406, gnl|mm7|chr10 (80116073-80116238) | |
| 278-406, gnl|Mm7|chr10 (80116083-80116211) | |
| 278-406, gnl|monDom2|scaffold_75 (5578347-5578177) | |
| 278-406, gnl|rheMac2|chr19 (1262612-1262772) | |
| 278-406, gnl|rn3|chr7 (10888429-10888274) | |
| 278-406, gnl|tetNig1|chrUn_random (6047247-6047087) | |
| 278-406, gnl|xenTro1|scaffold_198 (1201508-1201347) | |
| 411-584, gnl|bosTau2|chr10 (9506600-9506427) | |
| 411-584, gnl|canFam2|chr3 (3115104-3114913) | |
| 411-584, gnl|danRer3|chr24 (29062994-29062809) | |
| 411-584, gnl|echTel1|scaffold_73485 (1230-1420) | |
| 411-584, gnl|fr1|chrUn (171801846-171802031) | |
| 411-584, gnl|galGal2|chr10_random (1706885-1706697) | |
| 411-584, gnl|hg17|chr5 (112250600-112250795) | |
| 411-584, gnl|Hg17|chr5 (112250784-112250611) | |
| 411-584, gnl|mm7|chr18 (34725089-34725274) | |
| 411-584, gnl|Mm7|chr18 (34725273-34725100) | |
| 411-584, gnl|monDom2|scaffold_55 (491345-491153) | |
| 411-584, gnl|oryCun1|scaffold_83931 (3467-3662) | |
| 411-584, gnl|panTro1|chr4 (118378312-118378507) | |
| 411-584, gnl|rheMac2|chr6 (109210981-109211174) | |
| 411-584, gnl|rn3|chr18 (26845138-26845323) | |
| 411-584, gnl|tetNig1|chrUn_random (162344375-162344559) | |
| 411-584, gnl|xenTro1|scaffold_198 (1199718-1199909) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cje (0.495704) | |
| sin (0.349895) | |
| cki (0.330469) | |
| mga (0.32041) | |
| cte (0.29274) | |
| che (0.272628) | |
| eru (0.240096) | |
| nms (0.213858) | |
| tes (0.207814) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| cbl (0.114797) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.495704) | |
| sin (0.349895) | |
| cki (0.330469) | |
| mga (0.32041) | |
| cte (0.29274) | |
| che (0.272628) | |
| eru (0.240096) | |
| nms (0.213858) | |
| tes (0.207814) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| cbl (0.114797) |