Non-Coding RNA Search

Ss1.1-Tra1-TCH01G110094.5

Sequence:


               
               AGACGGCATGCTGGACGACGAGGAGTTCGCGCTGGCCAGCCACCTCATCGAGGCCAAGCT
CGAGGGCCACGGGCTGCCCACCAACCTGCCCCGCCGCCTGGTGCCGCCCTCCAAACGGCG
CCACAAGGGCTCGGCCGAGTGAGCCGGCCGCCTGCCTGCCAGCCCTCCCTCCCACTCGCC
CTGCTGTGGCTCCCCACCCTGGCGCACACGCACCCCGCCTGCCCACTCCCCCAGCTGTAA
GGAGGGGCGTCCCTCTGCCCTCCGCCGCCAGACAGGGGGCACCACGGGAGGGGCTAGGTT
TCTCTGCCCACCCTTCACACCTCTGTGCTCACATACACCTGGCACACTCGGACACGAACA
CACACGCACACACACACGCAGGCATCCGTCCATGCATCATTCATTCAAATATTTATTGAG
CATCTACTCTGTTCATATGTTCAGGGCTCCTTCCTACACTGGGGATTACAGCAGAGAGCC
CTCGTGGAGCCCGCTTTCTCAGGAGAGAGCGCCTGCAGAGTCACTCAAAGACACACACAC
ACACACACACACCAGCCCTAACCAGTCTGATCCCTGATTCTGATCCCCTCTCCCCACAAG
TGAGCGGCCACTTGGTTGAAATGACTAAGAGACAGGCCTCCCCCCACTTCCCACCCCTGG
CTCCTTCTTGCCCTGCCAGGCAAGGACCCTCCACTCCATCCTGGCCTCGGGACCACTGGG
GGCTCAGAGGGGAGACGCAACCTCCTACTTCCTCAGCTGCACCCCTCTTAGCCCCTTGCC
CCAGTTCAGGTCGCACCCCTTTCTTTAATAAGGGGAAAGCCCGGTCCTCCCACCCTTCCT
GCTCCTCCCTGCCCCCCCTACTTCTGTCTCTGCTCACCTGCCCTGGATTGAAAGCCCAGC
CTGCTCCCCCGACCCCTCAGGCTCCCCACAGCTGGTGGTCCGAATTTTAGACTGCGAATT
TTAGACAGCCTCCCGAGCCACCATCAGGCCATATTTAAGTGGAGTCCCTGCCAGAAACTA
AGGCCCCAGGACGTTATTTTTAGACTCCTTTTCAGGGACGTCGTGGGGGGAGGGGCTCTT
GGTGCTACAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGGCATGCTGGACGACGAGGAGTTCGCGCTGGCCAGCCACCTCATCGAGGCCAAGCT
CGAGGGCCACGGGCTGCCCACCAACCTGCCCCGCCGCCTGGTGCCGCCCTCCAAACGGCG
CCACAAGGGCTCGGCCGAGTGAGCCGGCCGCCTGCCTGCCAGCCCTCCCTCCCACTCGCC
CTGCTGTGGCTCCCCACCCTGGCGCACACGCACCCCGCCTGCCCACTCCCCCAGCTGTAA
GGAGGGGCGTCCCTCTGCCCTCCGCCGCCAGACAGGGGGCACCACGGGAGGGGCTAGGTT
TCTCTGCCCACCCTTCACACCTCTGTGCTCACATACACCTGGCACACTCGGACACGAACA
CACACGCACACACACACGCAGGCATCCGTCCATGCATCATTCATTCAAATATTTATTGAG
CATCTACTCTGTTCATATGTTCAGGGCTCCTTCCTACACTGGGGATTACAGCAGAGAGCC
CTCGTGGAGCCCGCTTTCTCAGGAGAGAGCGCCTGCAGAGTCACTCAAAGACACACACAC
ACACACACACACCAGCCCTAACCAGTCTGATCCCTGATTCTGATCCCCTCTCCCCACAAG
TGAGCGGCCACTTGGTTGAAATGACTAAGAGACAGGCCTCCCCCCACTTCCCACCCCTGG
CTCCTTCTTGCCCTGCCAGGCAAGGACCCTCCACTCCATCCTGGCCTCGGGACCACTGGG
GGCTCAGAGGGGAGACGCAACCTCCTACTTCCTCAGCTGCACCCCTCTTAGCCCCTTGCC
CCAGTTCAGGTCGCACCCCTTTCTTTAATAAGGGGAAAGCCCGGTCCTCCCACCCTTCCT
GCTCCTCCCTGCCCCCCCTACTTCTGTCTCTGCTCACCTGCCCTGGATTGAAAGCCCAGC
CTGCTCCCCCGACCCCTCAGGCTCCCCACAGCTGGTGGTCCGAATTTTAGACTGCGAATT
TTAGACAGCCTCCCGAGCCACCATCAGGCCATATTTAAGTGGAGTCCCTGCCAGAAACTA
AGGCCCCAGGACGTTATTTTTAGACTCCTTTTCAGGGACGTCGTGGGGGGAGGGGCTCTT
GGTGCTACAGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-202, gnl|bosTau2|chr18 (47626821-47627033)
               

               
               2-202, gnl|Hg17|chr19 (52936361-52936545)
               

               
               2-202, gnl|Mm7|chr7_random (1029735-1029532)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-202, gnl|bosTau2|chr18 (47626821-47627033)
               

               
               2-202, gnl|Hg17|chr19 (52936361-52936545)
               

               
               2-202, gnl|Mm7|chr7_random (1029735-1029532)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               clu (0.358938)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	2-202, gnl\|bosTau2\|chr18 (47626821-47627033)
	2-202, gnl\|Hg17\|chr19 (52936361-52936545)
	2-202, gnl\|Mm7\|chr7_random (1029735-1029532)

	clu (0.358938)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)
	eje (0.0988338)