Non-Coding RNA Search

Ss1.1-Tra1-TCH01G120007.5

Sequence:


               
               TCCCGCTCAGAGGGTTGAGTGGCGGCGGGGAGGTGAGGGCCCCGGTGGTGTTCGGATACA
CGTGGAGCTGCGGTGGGCGGGCAGCGGCCGGACAGCCGGAGGCGGCGGCGGCGGCGAGGG
GCACCCTTTTGCAGCCGCGGAGACCTAGGGCTCCGCTGCCTCCTCCGGCGGGTGTGAACG
TGCGCTTTGCGAGATGGATACTCCCCCGCTCTCAGGTTCGGATTCCGATTCTGATGACTC
TCTGGTCACCGACCGAGAGTTGCAGGACGCGTTTTCCCGGGGGCTCTTGAAGCCAGGCCT
CAACGTGGTGTTAGAGGGGCCGAAGAAGGCCGTGAACGACGTGAATGGCCTGAAGCAGTG
TCTGGGCGAATTTAAGCGGGATCTGGAGTGGGTTGAAAGGCTCGACGTGACCCTGGGTCC
GGTGCCGGAAGTCACTGCCCCTCAGTCAGCCTCCCAGAGCAAGGATCCGAAAGCTGTTGA
TCCAGAAGACGACTTCCAGCGTGAGATGAGCTTCTACCGTCAGGCCCAGGCAGCAGTGCT
TGCGGTACTGCCCCGCCTCCATCAGCTCAAAGTCCCTACCAAGCGGCCCACGGACTATTT
TGCAGAGATGGCCAAGACCGATCAGCAGATGCAGAAGATTCGACAGAAGCTGCAGGCTAA
ACAGGCGGCCATGGAGAAGTCAGAAAAGGCTAAGCAACTGCGAGCACTCAGGAAATACGG
AAAGAAGGTGCAAACAGAGGTCCTTCAGAAGCGGCAGCGGGAGAAAGCCCACATGATGAG
CGCCATCAAGAAGTACCAGAAAGGCTTCTCTGACAAGCTGGACTTCCTCGAGGGAGATCA
GAAGCCTGTTGCGCGGAGCACGAAGGACGGAGCCAAGGGCCAGCAGATGAAGAGGGGGCC
CAATGCCAAACGACGCTATAAAAACCAGAAGTTTGGTTACGGTGGGAAGAAGAAAGGCTC
CAAGTGGAATACTCGCGAGAGCTATGACGATGTGTCCAGCTTCCGGGCCAGGACCGCTCA
CGGCAAGGGCCTCAAGAGGCCTGGAAAGAAAGGGTCAAATAAGAGACCTGGAAAGCGGAC
ACGGGAGAAAATGAAGAGCAAGAACAGAAGCCGCTGAGTAAAGAGCGCGTTTATATGGAG
AGACCAGGAGAAAGGGGTGGAGACTTGGGCTTTCACTGTACAGTTGGACTCCTTCTGTTG
GTTTCTTGTTGTAAAAATTCCTTCGATAAATGAAAGAAAAGTTTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGCTCAGAGGGTTGAGTGGCGGCGGGGAGGTGAGGGCCCCGGTGGTGTTCGGATACA
CGTGGAGCTGCGGTGGGCGGGCAGCGGCCGGACAGCCGGAGGCGGCGGCGGCGGCGAGGG
GCACCCTTTTGCAGCCGCGGAGACCTAGGGCTCCGCTGCCTCCTCCGGCGGGTGTGAACG
TGCGCTTTGCGAGATGGATACTCCCCCGCTCTCAGGTTCGGATTCCGATTCTGATGACTC
TCTGGTCACCGACCGAGAGTTGCAGGACGCGTTTTCCCGGGGGCTCTTGAAGCCAGGCCT
CAACGTGGTGTTAGAGGGGCCGAAGAAGGCCGTGAACGACGTGAATGGCCTGAAGCAGTG
TCTGGGCGAATTTAAGCGGGATCTGGAGTGGGTTGAAAGGCTCGACGTGACCCTGGGTCC
GGTGCCGGAAGTCACTGCCCCTCAGTCAGCCTCCCAGAGCAAGGATCCGAAAGCTGTTGA
TCCAGAAGACGACTTCCAGCGTGAGATGAGCTTCTACCGTCAGGCCCAGGCAGCAGTGCT
TGCGGTACTGCCCCGCCTCCATCAGCTCAAAGTCCCTACCAAGCGGCCCACGGACTATTT
TGCAGAGATGGCCAAGACCGATCAGCAGATGCAGAAGATTCGACAGAAGCTGCAGGCTAA
ACAGGCGGCCATGGAGAAGTCAGAAAAGGCTAAGCAACTGCGAGCACTCAGGAAATACGG
AAAGAAGGTGCAAACAGAGGTCCTTCAGAAGCGGCAGCGGGAGAAAGCCCACATGATGAG
CGCCATCAAGAAGTACCAGAAAGGCTTCTCTGACAAGCTGGACTTCCTCGAGGGAGATCA
GAAGCCTGTTGCGCGGAGCACGAAGGACGGAGCCAAGGGCCAGCAGATGAAGAGGGGGCC
CAATGCCAAACGACGCTATAAAAACCAGAAGTTTGGTTACGGTGGGAAGAAGAAAGGCTC
CAAGTGGAATACTCGCGAGAGCTATGACGATGTGTCCAGCTTCCGGGCCAGGACCGCTCA
CGGCAAGGGCCTCAAGAGGCCTGGAAAGAAAGGGTCAAATAAGAGACCTGGAAAGCGGAC
ACGGGAGAAAATGAAGAGCAAGAACAGAAGCCGCTGAGTAAAGAGCGCGTTTATATGGAG
AGACCAGGAGAAAGGGGTGGAGACTTGGGCTTTCACTGTACAGTTGGACTCCTTCTGTTG
GTTTCTTGTTGTAAAAATTCCTTCGATAAATGAAAGAAAAGTTTTTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6IB29_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IB29_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               897-1065, + strand, RNAz p=0.800885

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               897-1065, + strand, RNAz p=0.800885

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               106-259, gnl|bosTau2|chr3 (72073128-72073282)
               

               
               106-259, gnl|Hg17|chr1 (43306974-43306817)
               


               
               343-516, gnl|bosTau2|chr3 (72073652-72073825)
               

               
               343-516, gnl|Hg17|chr1 (43306416-43306240)
               

               
               343-516, gnl|Mm7|chr4 (117997799-117997975)
               


               
               897-1065, gnl|bosTau2|chr3 (72079496-72079664)
               

               
               897-1065, gnl|Hg17|chr1 (43299570-43299402)
               

               
               897-1065, gnl|Mm7|chr4 (118001961-118002129)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-259, gnl|bosTau2|chr3 (72073128-72073282)
               

               
               106-259, gnl|Hg17|chr1 (43306974-43306817)
               


               
               343-516, gnl|bosTau2|chr3 (72073652-72073825)
               

               
               343-516, gnl|Hg17|chr1 (43306416-43306240)
               

               
               343-516, gnl|Mm7|chr4 (117997799-117997975)
               


               
               897-1065, gnl|bosTau2|chr3 (72079496-72079664)
               

               
               897-1065, gnl|Hg17|chr1 (43299570-43299402)
               

               
               897-1065, gnl|Mm7|chr4 (118001961-118002129)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               cut (0.509771)
               

               
               ese (0.379507)
               

               
               mcp (0.341297)
               

               
               hyp (0.285673)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               ese (0.379507)
               

               
               mcp (0.341297)
               

               
               hyp (0.285673)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	106-259, gnl\|bosTau2\|chr3 (72073128-72073282)
	106-259, gnl\|Hg17\|chr1 (43306974-43306817)

	343-516, gnl\|bosTau2\|chr3 (72073652-72073825)
	343-516, gnl\|Hg17\|chr1 (43306416-43306240)
	343-516, gnl\|Mm7\|chr4 (117997799-117997975)

	897-1065, gnl\|bosTau2\|chr3 (72079496-72079664)
	897-1065, gnl\|Hg17\|chr1 (43299570-43299402)
	897-1065, gnl\|Mm7\|chr4 (118001961-118002129)

	cut (0.509771)
	ese (0.379507)
	mcp (0.341297)
	hyp (0.285673)
	hea (0.204499)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	ton (0.1755)
	nje (0.16592)
	lun (0.150489)
	spl (0.143184)
	lnt (0.142308)
	nca (0.136874)
	thg (0.126791)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)