Ss1.1-Tra1-TCH01G120052.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTCTCAGATCTCTGCGCTGGGGCTGGCTGGCCGGCTGGTTCGGGGTGGCGGCGGGAGC GAGGAACCCGATGCGGGCGAGCGGCACCGGGGATGGCTGCGGCTGGAGGCGGGGACTGCG AGGGCGCGGCGCCCGAGGCGGACCGTCCTCACCAGCGGCCCTTCCTGATCGGGGTGAGCG GCGGCACCGCGAGCGGCAAGTCAACTGTCTGTGAGAAGATCATGGAGCTGCTGGGACAGA ATGAAGTAGACCACAGGCAGCGGAAGCTGGTCATCCTGAGCCAAGACAGGTTCTATAAGG TCCTGACCCCGGAGCAGAAGGCCAAGGCCTTGAAGGGACAGTACAATTTTGACCATCCAG ATGCTTTTGATAACGAGCTGATGCACAGGACGCTGACACGCATCGTGGAGGGCAGAACTG TCGAGGTCCCAACCTATGATTTTGTGACCCACTCCAGGCTAGCGGAGACCACGGTGGTCT ACCCCGCGGACGTGGTCCTGTTCGAGGGGATCCTGGTCTTCTACTCCCAGGAGATCCGGG ACATGTTCCACCTGCGTCTCTTCGTGGACACCGACTCTGACGTCAGGCTGTCGCGAAGAG TGCTCCGGGACGTGCAGCGCGGGCGCGACCTGGAGCAGATCCTGACGCAGTACACCACCT TCGTCAAGCCGGCCTTTGAGGAGTTCTGCCTGCCGACGAAGAAGTACGCCGACGTGATAA TCCCTCGAGGCGTCGACAACATGGTGGCCATCAACCTGATCGTGCAGCACATCCAGGACA TCCTCAACGGCGACATCTGCAAGTGGCACCGCGGAGGGGCCAACGGGCGCAGCTACAAGA GGACGTTTCCGGAGCCGGGCGACCACCCCGGTGTGCTGGCCTCGGGCAAACGGTCCCACC TGGAGTCCAGCAGCAGACCCCACTGAGGAGCGGGCGCTGTCCCTGAGACGCAGCGGACAC GTCCTCTCCGAGGCTGGTACGGCCGGGGTGGGGTCGGGGTCCAGGCGTCCCTCGCCGCCG TGGGAAGCCCGGCCGGGTCACTCCCACTGGGTCTGACGGCTTCTCCGCCCTGACGTTTCC ACCCGCTTCCTCGTGCTGAGGAGGCGGAAAGGTCTCTAGCTCCGAGGCAGCCCACAGAAC GTGCTTCAGTGAGCCAGGCACGTGTTCTGGGGACGCTGAGGCATCGGCTGAGACCCCGAC GGAGAACCCACAGCGCAGGTTCCGCGCGATGTGCTCGCACGCTGACCGAGGTCGAGTCTG AGGACGGCTCTTGCTCTGTGCGTTGCACAACCACGTCTTCTGTTTACTCCAGTCCCTGAC ACGCGAGCTCCCTGTGGCCACCAGTGGGTCGTGAGCCCATCTCCGAGGCTGAGCCGGGGG GGAGCCCCGGGGAGCAAGCCTTTCCTTAACCAGCACCCGACAGAGGCGGGTCCCTCGCCC AGCCCAGGCCTGCCTGGTGGGGGTCTGCCTTCCGACAGGCACGGCGTCATCGTGCGGCCC TGCCTGGGGCCTCTAAGCCCCGGCTGCTGTGTAGACGGGCCTCCCCTGATGTCAGCTGTG GCCAAGGCCGGGGCGCCCAGCCCGGCCGAGGTGTGTGGACAGGAGGTGTGAGCGGATGTC GCCGCCTCCGGGCACTAGTCCCTTGCCCACCCAGCATCCATGCCTCACCGACACGTGGGG TCCTGTCCTGGTTTGTCCTCCCTCCCTCCCGCGTGGCGGCGCCGTCTGTAGACGTGATCC TCTCCCGCTGCCGCCAGCTGTCAAGCGCCAACTGCAGTCACCCGCGACATCGGTTGCGCT TGGCTGAGCTTGGTGGCTGACCTCTGATGTCTATGTGACAGTTTTTCCAGAATCTTTGTG CCCTTGTGGAGAGAGAACCAATAAATAACTCCCAACACGGAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTCTCAGATCTCTGCGCTGGGGCTGGCTGGCCGGCTGGTTCGGGGTGGCGGCGGGAGC GAGGAACCCGATGCGGGCGAGCGGCACCGGGGATGGCTGCGGCTGGAGGCGGGGACTGCG AGGGCGCGGCGCCCGAGGCGGACCGTCCTCACCAGCGGCCCTTCCTGATCGGGGTGAGCG GCGGCACCGCGAGCGGCAAGTCAACTGTCTGTGAGAAGATCATGGAGCTGCTGGGACAGA ATGAAGTAGACCACAGGCAGCGGAAGCTGGTCATCCTGAGCCAAGACAGGTTCTATAAGG TCCTGACCCCGGAGCAGAAGGCCAAGGCCTTGAAGGGACAGTACAATTTTGACCATCCAG ATGCTTTTGATAACGAGCTGATGCACAGGACGCTGACACGCATCGTGGAGGGCAGAACTG TCGAGGTCCCAACCTATGATTTTGTGACCCACTCCAGGCTAGCGGAGACCACGGTGGTCT ACCCCGCGGACGTGGTCCTGTTCGAGGGGATCCTGGTCTTCTACTCCCAGGAGATCCGGG ACATGTTCCACCTGCGTCTCTTCGTGGACACCGACTCTGACGTCAGGCTGTCGCGAAGAG TGCTCCGGGACGTGCAGCGCGGGCGCGACCTGGAGCAGATCCTGACGCAGTACACCACCT TCGTCAAGCCGGCCTTTGAGGAGTTCTGCCTGCCGACGAAGAAGTACGCCGACGTGATAA TCCCTCGAGGCGTCGACAACATGGTGGCCATCAACCTGATCGTGCAGCACATCCAGGACA TCCTCAACGGCGACATCTGCAAGTGGCACCGCGGAGGGGCCAACGGGCGCAGCTACAAGA GGACGTTTCCGGAGCCGGGCGACCACCCCGGTGTGCTGGCCTCGGGCAAACGGTCCCACC TGGAGTCCAGCAGCAGACCCCACTGAGGAGCGGGCGCTGTCCCTGAGACGCAGCGGACAC GTCCTCTCCGAGGCTGGTACGGCCGGGGTGGGGTCGGGGTCCAGGCGTCCCTCGCCGCCG TGGGAAGCCCGGCCGGGTCACTCCCACTGGGTCTGACGGCTTCTCCGCCCTGACGTTTCC ACCCGCTTCCTCGTGCTGAGGAGGCGGAAAGGTCTCTAGCTCCGAGGCAGCCCACAGAAC GTGCTTCAGTGAGCCAGGCACGTGTTCTGGGGACGCTGAGGCATCGGCTGAGACCCCGAC GGAGAACCCACAGCGCAGGTTCCGCGCGATGTGCTCGCACGCTGACCGAGGTCGAGTCTG AGGACGGCTCTTGCTCTGTGCGTTGCACAACCACGTCTTCTGTTTACTCCAGTCCCTGAC ACGCGAGCTCCCTGTGGCCACCAGTGGGTCGTGAGCCCATCTCCGAGGCTGAGCCGGGGG GGAGCCCCGGGGAGCAAGCCTTTCCTTAACCAGCACCCGACAGAGGCGGGTCCCTCGCCC AGCCCAGGCCTGCCTGGTGGGGGTCTGCCTTCCGACAGGCACGGCGTCATCGTGCGGCCC TGCCTGGGGCCTCTAAGCCCCGGCTGCTGTGTAGACGGGCCTCCCCTGATGTCAGCTGTG GCCAAGGCCGGGGCGCCCAGCCCGGCCGAGGTGTGTGGACAGGAGGTGTGAGCGGATGTC GCCGCCTCCGGGCACTAGTCCCTTGCCCACCCAGCATCCATGCCTCACCGACACGTGGGG TCCTGTCCTGGTTTGTCCTCCCTCCCTCCCGCGTGGCGGCGCCGTCTGTAGACGTGATCC TCTCCCGCTGCCGCCAGCTGTCAAGCGCCAACTGCAGTCACCCGCGACATCGGTTGCGCT TGGCTGAGCTTGGTGGCTGACCTCTGATGTCTATGTGACAGTTTTTCCAGAATCTTTGTG CCCTTGTGGAGAGAGAACCAATAAATAACTCCCAACACGGAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 483-600, + strand, RNAz p=0.985584 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 483-600, + strand, RNAz p=0.985584 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 199-360, gnl|bosTau2|chr11 (82097512-82097351) | |
| 199-360, gnl|canFam2|chr9 (55953742-55953579) | |
| 199-360, gnl|danRer3|chr21 (952488-952325) | |
| 199-360, gnl|dasNov1|scaffold_8624 (1298-1135) | |
| 199-360, gnl|echTel1|scaffold_320314 (121652-121815) | |
| 199-360, gnl|fr1|chrUn (59180587-59180424) | |
| 199-360, gnl|galGal2|chr17 (4103993-4103830) | |
| 199-360, gnl|hg17|chr9 (131435426-131435589) | |
| 199-360, gnl|Hg17|chr9 (131435588-131435427) | |
| 199-360, gnl|loxAfr1|scaffold_8305 (79539-79702) | |
| 199-360, gnl|mm7|chr2 (32266890-32267053) | |
| 199-360, gnl|Mm7|chr2 (32267052-32266891) | |
| 199-360, gnl|monDom2|scaffold_51 (7068962-7069125) | |
| 199-360, gnl|oryCun1|scaffold_191678 (23588-23751) | |
| 199-360, gnl|panTro1|chr11 (116314960-116315123) | |
| 199-360, gnl|rheMac2|chr15 (7157217-7157054) | |
| 199-360, gnl|rn3|chr3 (11268368-11268531) | |
| 199-360, gnl|tetNig1|chr4 (3231180-3231343) | |
| 199-360, gnl|xenTro1|scaffold_191 (656777-656940) | |
| 455-600, gnl|bosTau2|chr11 (82096244-82096099) | |
| 455-600, gnl|Hg17|chr9 (131434214-131434069) | |
| 455-600, gnl|Mm7|chr2 (32265733-32265588) | |
| 744-1171, gnl|bosTau2|chr11 (82093773-82093342) | |
| 744-1171, gnl|Hg17|chr9 (131430163-131429653) | |
| 744-1171, gnl|Mm7|chr2 (32263523-32263049) | |
| 1591-1895, gnl|bosTau2|chr11 (82092875-82092578) | |
| 1591-1895, gnl|Hg17|chr9 (131429102-131428748) | |
| 1591-1895, gnl|Mm7|chr2 (32262639-32262319) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-360, gnl|bosTau2|chr11 (82097512-82097351) | |
| 199-360, gnl|canFam2|chr9 (55953742-55953579) | |
| 199-360, gnl|danRer3|chr21 (952488-952325) | |
| 199-360, gnl|dasNov1|scaffold_8624 (1298-1135) | |
| 199-360, gnl|echTel1|scaffold_320314 (121652-121815) | |
| 199-360, gnl|fr1|chrUn (59180587-59180424) | |
| 199-360, gnl|galGal2|chr17 (4103993-4103830) | |
| 199-360, gnl|hg17|chr9 (131435426-131435589) | |
| 199-360, gnl|Hg17|chr9 (131435588-131435427) | |
| 199-360, gnl|loxAfr1|scaffold_8305 (79539-79702) | |
| 199-360, gnl|mm7|chr2 (32266890-32267053) | |
| 199-360, gnl|Mm7|chr2 (32267052-32266891) | |
| 199-360, gnl|monDom2|scaffold_51 (7068962-7069125) | |
| 199-360, gnl|oryCun1|scaffold_191678 (23588-23751) | |
| 199-360, gnl|panTro1|chr11 (116314960-116315123) | |
| 199-360, gnl|rheMac2|chr15 (7157217-7157054) | |
| 199-360, gnl|rn3|chr3 (11268368-11268531) | |
| 199-360, gnl|tetNig1|chr4 (3231180-3231343) | |
| 199-360, gnl|xenTro1|scaffold_191 (656777-656940) | |
| 455-600, gnl|bosTau2|chr11 (82096244-82096099) | |
| 455-600, gnl|Hg17|chr9 (131434214-131434069) | |
| 455-600, gnl|Mm7|chr2 (32265733-32265588) | |
| 744-1171, gnl|bosTau2|chr11 (82093773-82093342) | |
| 744-1171, gnl|Hg17|chr9 (131430163-131429653) | |
| 744-1171, gnl|Mm7|chr2 (32263523-32263049) | |
| 1591-1895, gnl|bosTau2|chr11 (82092875-82092578) | |
| 1591-1895, gnl|Hg17|chr9 (131429102-131428748) | |
| 1591-1895, gnl|Mm7|chr2 (32262639-32262319) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| nep (0.36785) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eep (0.122564) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eep (0.122564) |