Non-Coding RNA Search

Ss1.1-Tra1-TCH01G120073.5

Sequence:


               
               TCCGTACTCGATGGAAAATGGGGGGAAAGGTTTTCGGGTTCTTTGTGTGCTTTTTAAAAT
GCAAAGGTGACTGTCAAAAGCGGAAGCAGTGGGGTTTGGGTTTTTTTGCTTTTTGAACGC
ACTTTTGGATCATTAACGTGACTAAACGATGATCTAATACACGTTTTATATGTTCTCTCT
TTCTTCGTTCATTATGAGAGAAAAGCTAGATTTTACAGGAAGGGAGACCTGGCCCATCTC
TACATACCTTCTTTTGATTCTTCCTGTGATGACACAGGGCCATTTTTTCGAACATTGGGG
ACTGAAAAGAGAAAAATCATTAATTAGCTGCAAGTGTACCTGGATTCCTCTCAGAGAAAT
TGAAATAAGCTCTTTGCAGGTGTCCAATCCTGGTAGCCACTGGTCTCCAGAACTCTCCTT
TCACACAAGTGTTTTTCCGGTTCTGTGATAACTAATTAACTATCATTTGGTGATTAAAAG
ATCCTACAGTAGGAGCGTGATTAAGTGTCCTTCATCTTAAACTCTCTTTACGAGGTGATT
AGGGCGACGCACCTACTGCAAAAGCCCTTCTGGTTCCACGTGAAAAATCTCCATCACTTT
TTTTTCTCCCATCAGAAGAAGCTGTGCACGTGGCAGCAGAAAGGTTTGGTTCCTTTAAAA
TAACCCACCGCCTTGTCGCCTGTTTCTGATTTTATTTCAAGTGCCTGCCTCCCATTGTAC
ACACACATCCTAGATGCCTCCCTGTGTCTGAAAGGATTGAGCCTTTTGTGTCGGAGACGT
CACCTCCTTCTGCTCCAAGCGGGCTGGTGATGTCCTTCTTGAGGTTATCGGGTTTTATTA
TTTGTAAAGTCTATAGAAAGGGAAAGAAATCCACATTTAATTTCAGAACTTCCCTTTAAG
TTTTGTATTTATTTCTTTCCTGTTCTTGAGATGGAAAATAGGTCTGGGAGACCTTCTGCA
TTACACACACTCTGGAAGACGCAGTGAGGAAGCGTCCTTAGACGACAAACCAGAATATTG
TGATGGCGCCGTGTTTAAAACAGGCCGGTTTGGAGTTCCCTGCTGGATCGGTGGGCTAAG
GAGCTGTCAGTGTCACTGCTGTGGCTCGGGTCACTGCTATGGCACCGATTCGACCCCTGG
CCCAGGAACTCTGCATGCCACGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGTACTCGATGGAAAATGGGGGGAAAGGTTTTCGGGTTCTTTGTGTGCTTTTTAAAAT
GCAAAGGTGACTGTCAAAAGCGGAAGCAGTGGGGTTTGGGTTTTTTTGCTTTTTGAACGC
ACTTTTGGATCATTAACGTGACTAAACGATGATCTAATACACGTTTTATATGTTCTCTCT
TTCTTCGTTCATTATGAGAGAAAAGCTAGATTTTACAGGAAGGGAGACCTGGCCCATCTC
TACATACCTTCTTTTGATTCTTCCTGTGATGACACAGGGCCATTTTTTCGAACATTGGGG
ACTGAAAAGAGAAAAATCATTAATTAGCTGCAAGTGTACCTGGATTCCTCTCAGAGAAAT
TGAAATAAGCTCTTTGCAGGTGTCCAATCCTGGTAGCCACTGGTCTCCAGAACTCTCCTT
TCACACAAGTGTTTTTCCGGTTCTGTGATAACTAATTAACTATCATTTGGTGATTAAAAG
ATCCTACAGTAGGAGCGTGATTAAGTGTCCTTCATCTTAAACTCTCTTTACGAGGTGATT
AGGGCGACGCACCTACTGCAAAAGCCCTTCTGGTTCCACGTGAAAAATCTCCATCACTTT
TTTTTCTCCCATCAGAAGAAGCTGTGCACGTGGCAGCAGAAAGGTTTGGTTCCTTTAAAA
TAACCCACCGCCTTGTCGCCTGTTTCTGATTTTATTTCAAGTGCCTGCCTCCCATTGTAC
ACACACATCCTAGATGCCTCCCTGTGTCTGAAAGGATTGAGCCTTTTGTGTCGGAGACGT
CACCTCCTTCTGCTCCAAGCGGGCTGGTGATGTCCTTCTTGAGGTTATCGGGTTTTATTA
TTTGTAAAGTCTATAGAAAGGGAAAGAAATCCACATTTAATTTCAGAACTTCCCTTTAAG
TTTTGTATTTATTTCTTTCCTGTTCTTGAGATGGAAAATAGGTCTGGGAGACCTTCTGCA
TTACACACACTCTGGAAGACGCAGTGAGGAAGCGTCCTTAGACGACAAACCAGAATATTG
TGATGGCGCCGTGTTTAAAACAGGCCGGTTTGGAGTTCCCTGCTGGATCGGTGGGCTAAG
GAGCTGTCAGTGTCACTGCTGTGGCTCGGGTCACTGCTATGGCACCGATTCGACCCCTGG
CCCAGGAACTCTGCATGCCACGGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1012, gnl|bosTau2|chr13 (39312734-39311769)
               

               
               1-1012, gnl|Hg17|chr20 (56370673-56371549)
               

               
               1-1012, gnl|Mm7|chr2 (173447547-173448461)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1012, gnl|bosTau2|chr13 (39312734-39311769)
               

               
               1-1012, gnl|Hg17|chr20 (56370673-56371549)
               

               
               1-1012, gnl|Mm7|chr2 (173447547-173448461)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               ese (0.253004)
               

               
               mas (0.210305)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ese (0.253004)
               

               
               mas (0.210305)

	1-1012, gnl\|bosTau2\|chr13 (39312734-39311769)
	1-1012, gnl\|Hg17\|chr20 (56370673-56371549)
	1-1012, gnl\|Mm7\|chr2 (173447547-173448461)