Non-Coding RNA Search

Ss1.1-Tra1-TCH01H010006.5

Sequence:


               
               TGAAAGGGCAAGAGGCAGGTTCCCTCGACCCCGGAACCCCTGTTCCCAGGCTATGACCCC
CAGTGCCCTGTAGATCTGGCGGGCCCCCAGTGCTTGCGACCCCTATTTTGGGGTCTGGGT
GGCTACTGGAGGGCCTTGCGGAGGGGCAGAGAAGGCAGGACCATGGCATCTAGGGCCTCT
GAACCTCCCCCAGGGCGCAGCGTGACGGCGGGCATCATCATTGTTGGAGATGAGATCCTC
AAGGGACACACTCAGGACACCAACACCTACTTTCTGTGCCGGACGCTGCGCTCCCTGGGG
GTCCAGGTGTGCCGAGTCTCCGTTGTGCCCGACGAGGTAGCCACCATTGCAGCTGAGGTC
ACGTCTTTCTCCAGCCGCTTCACCCACGTCCTCACAGCAGGGGGCATCGGCCCCACCCAT
GATGATGTGACCTTTGAGGCAGTAGCACAGGCCTTTGGGGACGAGCTCAAGCCCCACCCT
GAGCTGGAAGCGGCCATCCGAGGCCTAGGAGGGGAAGGCTGGGAGAAGCTGTCGCGGGTG
CCCTCCTCTGCCCGCCTGCATTATGGCACAGACCCTCGCACAGGCCGTCCCTTCAGGTTC
CCACTGGTCTCTGTCCGAAACGTCTACCTCTTCCCCGGAATTCCGGAGCTGCTGCGGCGG
GTGCTGGAGGGGCTCAAGGGACTGTTCCAAAACACGGCTGTTCAGTTCCACTTGCGGGAG
CTGTATGTGGCAGCTGACGAGGCCTCGATTGCCCCCATCCTGGCTGAGGCCCAGGCCCAC
TTTGGGCGCAGGCTTGGCCTGGGTTCCTACCCTGACTGGGGCAGCAACTACTATCAGGTG
AAGCTGACACTGGACTCGGAGGAAGAAGGGCCCCTGGAGGAATGCCTGGCCTACCTAACT
GCCCGCCTGCCTCAGGGATCGCTGGTCCCCTATGTCCCCAACGCCGTGGAGCAGGCCAGT
GAGGCTGTGTACAAACTCACTGAGTCAGGTAGGGGCCAAACCCTTGGTGCCACCCTCAGT
CCCAGGAACGCAGGGCTGTTGGAGGCACCCTGCAGATCCAGGAGAAGATAGATAGTTACA
GCTGATGCATTCATTCTCCCAATAAATAGCAATTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAGGGCAAGAGGCAGGTTCCCTCGACCCCGGAACCCCTGTTCCCAGGCTATGACCCC
CAGTGCCCTGTAGATCTGGCGGGCCCCCAGTGCTTGCGACCCCTATTTTGGGGTCTGGGT
GGCTACTGGAGGGCCTTGCGGAGGGGCAGAGAAGGCAGGACCATGGCATCTAGGGCCTCT
GAACCTCCCCCAGGGCGCAGCGTGACGGCGGGCATCATCATTGTTGGAGATGAGATCCTC
AAGGGACACACTCAGGACACCAACACCTACTTTCTGTGCCGGACGCTGCGCTCCCTGGGG
GTCCAGGTGTGCCGAGTCTCCGTTGTGCCCGACGAGGTAGCCACCATTGCAGCTGAGGTC
ACGTCTTTCTCCAGCCGCTTCACCCACGTCCTCACAGCAGGGGGCATCGGCCCCACCCAT
GATGATGTGACCTTTGAGGCAGTAGCACAGGCCTTTGGGGACGAGCTCAAGCCCCACCCT
GAGCTGGAAGCGGCCATCCGAGGCCTAGGAGGGGAAGGCTGGGAGAAGCTGTCGCGGGTG
CCCTCCTCTGCCCGCCTGCATTATGGCACAGACCCTCGCACAGGCCGTCCCTTCAGGTTC
CCACTGGTCTCTGTCCGAAACGTCTACCTCTTCCCCGGAATTCCGGAGCTGCTGCGGCGG
GTGCTGGAGGGGCTCAAGGGACTGTTCCAAAACACGGCTGTTCAGTTCCACTTGCGGGAG
CTGTATGTGGCAGCTGACGAGGCCTCGATTGCCCCCATCCTGGCTGAGGCCCAGGCCCAC
TTTGGGCGCAGGCTTGGCCTGGGTTCCTACCCTGACTGGGGCAGCAACTACTATCAGGTG
AAGCTGACACTGGACTCGGAGGAAGAAGGGCCCCTGGAGGAATGCCTGGCCTACCTAACT
GCCCGCCTGCCTCAGGGATCGCTGGTCCCCTATGTCCCCAACGCCGTGGAGCAGGCCAGT
GAGGCTGTGTACAAACTCACTGAGTCAGGTAGGGGCCAAACCCTTGGTGCCACCCTCAGT
CCCAGGAACGCAGGGCTGTTGGAGGCACCCTGCAGATCCAGGAGAAGATAGATAGTTACA
GCTGATGCATTCATTCTCCCAATAAATAGCAATTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887885|ref|XP_583164.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887885|ref|XP_583164.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               434-553, - strand, RNAz p=0.515787
               

               
               714-993, + strand, RNAz p=0.927703

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-553, - strand, RNAz p=0.515787
               

               
               714-993, + strand, RNAz p=0.927703

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC032323, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC032323, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               235-993, gnl|bosTau2|chr3 (9068334-9069092)
               

               
               235-993, gnl|Hg17|chr1 (151773645-151774403)
               

               
               235-993, gnl|Mm7|chr3 (89535838-89535081)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               235-993, gnl|bosTau2|chr3 (9068334-9069092)
               

               
               235-993, gnl|Hg17|chr1 (151773645-151774403)
               

               
               235-993, gnl|Mm7|chr3 (89535838-89535081)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               clu (0.119646)

	434-553, - strand, RNAz p=0.515787
	714-993, + strand, RNAz p=0.927703

	235-993, gnl\|bosTau2\|chr3 (9068334-9069092)
	235-993, gnl\|Hg17\|chr1 (151773645-151774403)
	235-993, gnl\|Mm7\|chr3 (89535838-89535081)