Ss1.1-Tra1-TCH01H010084.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAACCTTCGTTTCTCGAGTCGCCTCAGGACCTCAGACATGAAGCTCTTCATCCCCGC CCTGCTGTTCCTCGGGACACTTGGACTGTGTCTGGCTGCCCCTAAGAAAGGGGTTCGATG GTGTGTCATATCCACAGCAGAGTATTCAAAATGCCGCCAGTGGCAATCAAAGATAAGAAG AACTAATCCCATCTTCTGCATAAGGAGGGCTTCTCCCACTGACTGTATCCGGGCCATCGC GGCAAAAAGGGCAGATGCTGTGACCCTTGATGGTGGTTTGGTGTTTGAAGCAGGCCAGTA CAAACTGCGGCCGGTAGCAGCGGAGATCTACGGGACAGAAGAGAATCCCCAAACCTACTA TTATGCTGTGGCTGTAGTGAAGAAAGGTTTCAACTTTCAGCTGAACCAGCTACAAGGTCG AAAGTCCTGCCACACAGGCCTTGGCAGGTCTGCCGGGTGGAATATTCCTATAGGGTTACT TCGCCGGTTCTTGGACTGGGCAGGGCCACCTGAGCCCCTCCAGAAAGCTGTGGCCAAATT CTTCTCTCAGAGCTGTGTGCCCTGCGCAGATGGAAATGCGTATCCCAACCTGTGTCAGCT GTGCATAGGGAAAGGGAAAGATAAATGTGCTTGTTCCTCCCAGGAACCGTATTTTGGCTA TTCCGGTGCCTTCAACTGTCTGCACAAAGGGATTGGAGATGTGGCTTTTGTCAAGGAGAG TACAGTGTTTGAGAACCTGCCACAGAAGGCTGACCGGGACAAATACGAGCTACTCTGCCC AGACAATACTCGAAAGCCAGTGGAAGCATTCAGGGAGTGCCACCTTGCCCGGGTCCCTTC TCATGCTGTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAACCTTCGTTTCTCGAGTCGCCTCAGGACCTCAGACATGAAGCTCTTCATCCCCGC CCTGCTGTTCCTCGGGACACTTGGACTGTGTCTGGCTGCCCCTAAGAAAGGGGTTCGATG GTGTGTCATATCCACAGCAGAGTATTCAAAATGCCGCCAGTGGCAATCAAAGATAAGAAG AACTAATCCCATCTTCTGCATAAGGAGGGCTTCTCCCACTGACTGTATCCGGGCCATCGC GGCAAAAAGGGCAGATGCTGTGACCCTTGATGGTGGTTTGGTGTTTGAAGCAGGCCAGTA CAAACTGCGGCCGGTAGCAGCGGAGATCTACGGGACAGAAGAGAATCCCCAAACCTACTA TTATGCTGTGGCTGTAGTGAAGAAAGGTTTCAACTTTCAGCTGAACCAGCTACAAGGTCG AAAGTCCTGCCACACAGGCCTTGGCAGGTCTGCCGGGTGGAATATTCCTATAGGGTTACT TCGCCGGTTCTTGGACTGGGCAGGGCCACCTGAGCCCCTCCAGAAAGCTGTGGCCAAATT CTTCTCTCAGAGCTGTGTGCCCTGCGCAGATGGAAATGCGTATCCCAACCTGTGTCAGCT GTGCATAGGGAAAGGGAAAGATAAATGTGCTTGTTCCTCCCAGGAACCGTATTTTGGCTA TTCCGGTGCCTTCAACTGTCTGCACAAAGGGATTGGAGATGTGGCTTTTGTCAAGGAGAG TACAGTGTTTGAGAACCTGCCACAGAAGGCTGACCGGGACAAATACGAGCTACTCTGCCC AGACAATACTCGAAAGCCAGTGGAAGCATTCAGGGAGTGCCACCTTGCCCGGGTCCCTTC TCATGCTGTTGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 385-523, + strand, RNAz p=0.80402 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 385-523, + strand, RNAz p=0.80402 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 83-242, gnl|bosTau2|chr22 (42651550-42651385) | |
| 83-242, gnl|Hg17|chr3 (46476314-46476149) | |
| 83-242, gnl|Mm7|chr9 (110718548-110718710) | |
| 346-523, gnl|bosTau2|chr22 (42648030-42647853) | |
| 346-523, gnl|Hg17|chr3 (46472471-46472294) | |
| 346-523, gnl|Mm7|chr9 (110719984-110720161) | |
| 526-675, gnl|bosTau2|chr22 (42647234-42647085) | |
| 526-675, gnl|canFam2|chr20 (45242077-45241866) | |
| 526-675, gnl|dasNov1|scaffold_110664 (576-787) | |
| 526-675, gnl|echTel1|scaffold_104857 (2387-2182) | |
| 526-675, gnl|fr1|chrUn (234792437-234792590) | |
| 526-675, gnl|hg17|chr3 (46471765-46471976) | |
| 526-675, gnl|Hg17|chr3 (46471938-46471789) | |
| 526-675, gnl|loxAfr1|scaffold_51413 (3554-3343) | |
| 526-675, gnl|mm7|chr9 (110720709-110720498) | |
| 526-675, gnl|Mm7|chr9 (110720534-110720683) | |
| 526-675, gnl|monDom2|scaffold_24 (26874562-26874368) | |
| 526-675, gnl|oryCun1|scaffold_139992 (514-718) | |
| 526-675, gnl|panTro1|chr2 (47822106-47822317) | |
| 526-675, gnl|rheMac2|chr2 (90071570-90071359) | |
| 526-675, gnl|rn3|chr8 (115441901-115441690) | |
| 526-675, gnl|tetNig1|chr1 (16719410-16719230) | |
| 731-852, gnl|bosTau2|chr22 (42640747-42640626) | |
| 731-852, gnl|canFam2|chr20 (45244894-45244742) | |
| 731-852, gnl|canFam2|chr20 (45244894-45244742) | |
| 731-852, gnl|dasNov1|scaffold_279949 (369-217) | |
| 731-852, gnl|dasNov1|scaffold_279949 (369-217) | |
| 731-852, gnl|echTel1|scaffold_104857 (3833-3678) | |
| 731-852, gnl|echTel1|scaffold_47943 (333-177) | |
| 731-852, gnl|fr1|chrUn (234791983-234792114) | |
| 731-852, gnl|fr1|chrUn (234791983-234792114) | |
| 731-852, gnl|hg17|chr3 (46467028-46467180) | |
| 731-852, gnl|Hg17|chr3 (46467168-46467047) | |
| 731-852, gnl|hg17|chr3_random (966764-966916) | |
| 731-852, gnl|loxAfr1|scaffold_51413 (6683-6527) | |
| 731-852, gnl|loxAfr1|scaffold_51413 (6683-6527) | |
| 731-852, gnl|mm7|chr9 (110722227-110722075) | |
| 731-852, gnl|mm7|chr9 (110722227-110722075) | |
| 731-852, gnl|Mm7|chr9 (110722085-110722206) | |
| 731-852, gnl|monDom2|scaffold_24 (26876583-26876431) | |
| 731-852, gnl|monDom2|scaffold_24 (26876583-26876431) | |
| 731-852, gnl|oryCun1|scaffold_99438 (564-413) | |
| 731-852, gnl|oryCun1|scaffold_99438 (564-413) | |
| 731-852, gnl|panTro1|chr2 (47817376-47817528) | |
| 731-852, gnl|panTro1|chr2 (47817376-47817528) | |
| 731-852, gnl|rheMac2|chr2 (90076361-90076209) | |
| 731-852, gnl|rheMac2|chr2 (90076361-90076209) | |
| 731-852, gnl|rn3|chr8 (115443547-115443395) | |
| 731-852, gnl|rn3|chr8 (115443547-115443395) | |
| 731-852, gnl|tetNig1|chr15 (6078350-6078248) | |
| 731-852, gnl|tetNig1|chr15 (6078350-6078248) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-242, gnl|bosTau2|chr22 (42651550-42651385) | |
| 83-242, gnl|Hg17|chr3 (46476314-46476149) | |
| 83-242, gnl|Mm7|chr9 (110718548-110718710) | |
| 346-523, gnl|bosTau2|chr22 (42648030-42647853) | |
| 346-523, gnl|Hg17|chr3 (46472471-46472294) | |
| 346-523, gnl|Mm7|chr9 (110719984-110720161) | |
| 526-675, gnl|bosTau2|chr22 (42647234-42647085) | |
| 526-675, gnl|canFam2|chr20 (45242077-45241866) | |
| 526-675, gnl|dasNov1|scaffold_110664 (576-787) | |
| 526-675, gnl|echTel1|scaffold_104857 (2387-2182) | |
| 526-675, gnl|fr1|chrUn (234792437-234792590) | |
| 526-675, gnl|hg17|chr3 (46471765-46471976) | |
| 526-675, gnl|Hg17|chr3 (46471938-46471789) | |
| 526-675, gnl|loxAfr1|scaffold_51413 (3554-3343) | |
| 526-675, gnl|mm7|chr9 (110720709-110720498) | |
| 526-675, gnl|Mm7|chr9 (110720534-110720683) | |
| 526-675, gnl|monDom2|scaffold_24 (26874562-26874368) | |
| 526-675, gnl|oryCun1|scaffold_139992 (514-718) | |
| 526-675, gnl|panTro1|chr2 (47822106-47822317) | |
| 526-675, gnl|rheMac2|chr2 (90071570-90071359) | |
| 526-675, gnl|rn3|chr8 (115441901-115441690) | |
| 526-675, gnl|tetNig1|chr1 (16719410-16719230) | |
| 731-852, gnl|bosTau2|chr22 (42640747-42640626) | |
| 731-852, gnl|canFam2|chr20 (45244894-45244742) | |
| 731-852, gnl|canFam2|chr20 (45244894-45244742) | |
| 731-852, gnl|dasNov1|scaffold_279949 (369-217) | |
| 731-852, gnl|dasNov1|scaffold_279949 (369-217) | |
| 731-852, gnl|echTel1|scaffold_104857 (3833-3678) | |
| 731-852, gnl|echTel1|scaffold_47943 (333-177) | |
| 731-852, gnl|fr1|chrUn (234791983-234792114) | |
| 731-852, gnl|fr1|chrUn (234791983-234792114) | |
| 731-852, gnl|hg17|chr3 (46467028-46467180) | |
| 731-852, gnl|Hg17|chr3 (46467168-46467047) | |
| 731-852, gnl|hg17|chr3_random (966764-966916) | |
| 731-852, gnl|loxAfr1|scaffold_51413 (6683-6527) | |
| 731-852, gnl|loxAfr1|scaffold_51413 (6683-6527) | |
| 731-852, gnl|mm7|chr9 (110722227-110722075) | |
| 731-852, gnl|mm7|chr9 (110722227-110722075) | |
| 731-852, gnl|Mm7|chr9 (110722085-110722206) | |
| 731-852, gnl|monDom2|scaffold_24 (26876583-26876431) | |
| 731-852, gnl|monDom2|scaffold_24 (26876583-26876431) | |
| 731-852, gnl|oryCun1|scaffold_99438 (564-413) | |
| 731-852, gnl|oryCun1|scaffold_99438 (564-413) | |
| 731-852, gnl|panTro1|chr2 (47817376-47817528) | |
| 731-852, gnl|panTro1|chr2 (47817376-47817528) | |
| 731-852, gnl|rheMac2|chr2 (90076361-90076209) | |
| 731-852, gnl|rheMac2|chr2 (90076361-90076209) | |
| 731-852, gnl|rn3|chr8 (115443547-115443395) | |
| 731-852, gnl|rn3|chr8 (115443547-115443395) | |
| 731-852, gnl|tetNig1|chr15 (6078350-6078248) | |
| 731-852, gnl|tetNig1|chr15 (6078350-6078248) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| eli (0.151814) |