Non-Coding RNA Search

Ss1.1-Tra1-TCH01H010103.5

Sequence:


               
               AGCCCACCCCGCAGCTGGCGGCGTTTTCGGCGTCCAAGGCGTATTTAGACCACTTCAGCA
GAGCCCTGCAGTATGAATATGCTTCCAAAGGAATCTTTGTACAGAGTCTGATCCCGTTCT
ACGTGGCCACCAACGTGACCACGCCTGGCAGCTTTCTGCACAAGTGCCCCTGGTTGGTGC
CTTCACCGAAAGTGTACGCACATCATGCTGTTTCCACCCTGGGCATTTCGAAGCGGACCA
CCGGGTACTGGTCCCATTCTATCCAGTTTCTTTTTGCACAGTATATGCCTGAATGGCTCT
GGGTGTGGGGAGCCAATATTCTCAATCGTTCTTTACGTAAAGAGGCCTTATCCTGCCAAG
CATGAAGCTGGATGATGGTTGCGAAGTTTTGCCAACTCGTGGGAGCCCGCAGTAGTCTAC
GTGTGGAAGAACACATGTAATTTATCTTCTGTAACTTCTTTTCTTACTGATTATTTAATT
ATGTAGCATACCGTTGACTCATCATTTGCAAAGCAAACACACAGTGCTTTTAGACTGCTG
TGGAAAAGCGTCACGGGCCTCGTGGACGGCCCGGAGTGCACAACGGCCGCGGCTCCAGAC
CTGACGGAGGAAGGCTGGGTCTCGATGCTGTTCCAAAGTTGTGCGATGTCTGTCCACCTG
GGAGCTACAGCCGTCTGACCTTGAAGTGTAACGTGACCCGTCGGCTCTCCGCCCTTCACA
TGTTGTTTCTTAAAGGGAAATTGTCTGTTTCAGCGGGTGAATTCTCTTCGTTTTCAAACG
TTCATCAGGAAAACCTATTTAAAGGCGTTATTTTCGAGGGAAGATTTCTGCCCTCTTCAG
TGGAAATCCGTGTGTATCACGTGTTACGTTAGTGGTTTGGCCCTCCGCGTGTGAAATGCC
GCTCTTGCAATGAGCTCTCATTGGCGAACCATACGTGTATGTATGTTGTGTGCATCTGGG
CAACTTTATTTATGAGCAGGTTACTTTTAAAGAGTTCTTGTCAAGATGGCTTCATGTGGA
ACCGTAAAGAGTATGAAAATTCCCGATTGTTCCTTTTCATACTAAACAAGGCAACCCAGT
TTTGTGCTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCACCCCGCAGCTGGCGGCGTTTTCGGCGTCCAAGGCGTATTTAGACCACTTCAGCA
GAGCCCTGCAGTATGAATATGCTTCCAAAGGAATCTTTGTACAGAGTCTGATCCCGTTCT
ACGTGGCCACCAACGTGACCACGCCTGGCAGCTTTCTGCACAAGTGCCCCTGGTTGGTGC
CTTCACCGAAAGTGTACGCACATCATGCTGTTTCCACCCTGGGCATTTCGAAGCGGACCA
CCGGGTACTGGTCCCATTCTATCCAGTTTCTTTTTGCACAGTATATGCCTGAATGGCTCT
GGGTGTGGGGAGCCAATATTCTCAATCGTTCTTTACGTAAAGAGGCCTTATCCTGCCAAG
CATGAAGCTGGATGATGGTTGCGAAGTTTTGCCAACTCGTGGGAGCCCGCAGTAGTCTAC
GTGTGGAAGAACACATGTAATTTATCTTCTGTAACTTCTTTTCTTACTGATTATTTAATT
ATGTAGCATACCGTTGACTCATCATTTGCAAAGCAAACACACAGTGCTTTTAGACTGCTG
TGGAAAAGCGTCACGGGCCTCGTGGACGGCCCGGAGTGCACAACGGCCGCGGCTCCAGAC
CTGACGGAGGAAGGCTGGGTCTCGATGCTGTTCCAAAGTTGTGCGATGTCTGTCCACCTG
GGAGCTACAGCCGTCTGACCTTGAAGTGTAACGTGACCCGTCGGCTCTCCGCCCTTCACA
TGTTGTTTCTTAAAGGGAAATTGTCTGTTTCAGCGGGTGAATTCTCTTCGTTTTCAAACG
TTCATCAGGAAAACCTATTTAAAGGCGTTATTTTCGAGGGAAGATTTCTGCCCTCTTCAG
TGGAAATCCGTGTGTATCACGTGTTACGTTAGTGGTTTGGCCCTCCGCGTGTGAAATGCC
GCTCTTGCAATGAGCTCTCATTGGCGAACCATACGTGTATGTATGTTGTGTGCATCTGGG
CAACTTTATTTATGAGCAGGTTACTTTTAAAGAGTTCTTGTCAAGATGGCTTCATGTGGA
ACCGTAAAGAGTATGAAAATTCCCGATTGTTCCTTTTCATACTAAACAAGGCAACCCAGT
TTTGTGCTGTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               76-235, - strand, RNAz p=0.648725

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-235, - strand, RNAz p=0.648725

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-266, gnl|bosTau2|chr18 (10751324-10751553)
               

               
               37-266, gnl|Hg17|chr16 (82720883-82720654)
               

               
               37-266, gnl|Mm7|chr8 (118187348-118187119)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-266, gnl|bosTau2|chr18 (10751324-10751553)
               

               
               37-266, gnl|Hg17|chr16 (82720883-82720654)
               

               
               37-266, gnl|Mm7|chr8 (118187348-118187119)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               cki (0.165235)

	37-266, gnl\|bosTau2\|chr18 (10751324-10751553)
	37-266, gnl\|Hg17\|chr16 (82720883-82720654)
	37-266, gnl\|Mm7\|chr8 (118187348-118187119)