Ss1.1-Tra1-TCH01H020010.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCTCCATCTTGCTTCTGCCCCCGACAGGTTCTCCTGTCCGGGTCACTGGGACGCCAA GACCGTTCTGTGGACGCCAGTTGACAATGCTGTCCCGGGTGGTACTTTCTGCCGCCGCCG CAGCAGCCCCCTCCCTGAAGAACGCAGCCCTCCTCGGTCCGGGGGTACTGCAGGCAACAA GGATCTTTCACACAGGGCAGCCAAGCCTTGCCCCTGTACCACCTCTTCCTGAACATGGAG GAAAAGTTCGTTTGGGGCTGATCCCTGAGGAATTCTTCCAGTTCCTTTATCCTAAAACTG GAGTGACAGGACCCTATGTGCTTGGAACTGGGCTTATCTTATATTTACTTTCCAAAGAGA TATATGTGATAACTGCAGAGACCTTCTCCGCCATATCAACAATAGGTGTACTTGTCTATA TAGTTAAAAAATATGGTGCCTCTATTGGGGCATTTGCTGATAAACTCAATGAGCAAAAAA TTGCCCAACTGGAAGAAGTGAAACAGGCTTCCATCAAACAAATCCAGGATGCAATTGATC TGGAGAAATCACAGCAGGCACTGGTTCAAAAGCGCCATTACCTTTTTGATGTCCAGAGGA ATAACATTGCTATGGCCTTGGAGGTTACTTACCGGGAACGGCTGCATAGAGTATACAAGG AGATAAAGAATCGCCTGGACTATCACATCTCTGTACAGAATATGATGCGTCAGAAGGAAC AAGAGCACATGATAAGATGGGTGGAGAAGCACGTGGTGCAGAGCATCTCCGCACAGCAGG AGAAGGAGACAATTGCCAAGTGCATTGCAGATCTAAAGCTGCTCGCAAAGAAGGCTCAAG CACAGCCAGTTCTGTAATTGCATCCAGCCCAGTTGAGATAGCTAGAAACATTTGACTGAC TAAATGGAAACTAGTCTGTGAGACAAAATCTTTCTGTATTGCTATCTACTGAAGTTAAGT TTATCTTTCTAAAAGAAAAAAAAATGAAGTGTTTGTTTCATATAATGAGAGAATTACAAC AGTCTATTGGCCAGTAAGATGTTTTTCTCATCCTTCTTGCTCTGCATTTTGAATTGTTCC ATGAAGACTTTTGAATAAGCAGTTTGCATTTAATACAATCTGGTACCTGGCTAAAGAGTT ATCAGGTTATAGTTTAAATTTGTAATTAATTCAACCATCTAACAATAAAGTGACAGTTAA AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCTCCATCTTGCTTCTGCCCCCGACAGGTTCTCCTGTCCGGGTCACTGGGACGCCAA GACCGTTCTGTGGACGCCAGTTGACAATGCTGTCCCGGGTGGTACTTTCTGCCGCCGCCG CAGCAGCCCCCTCCCTGAAGAACGCAGCCCTCCTCGGTCCGGGGGTACTGCAGGCAACAA GGATCTTTCACACAGGGCAGCCAAGCCTTGCCCCTGTACCACCTCTTCCTGAACATGGAG GAAAAGTTCGTTTGGGGCTGATCCCTGAGGAATTCTTCCAGTTCCTTTATCCTAAAACTG GAGTGACAGGACCCTATGTGCTTGGAACTGGGCTTATCTTATATTTACTTTCCAAAGAGA TATATGTGATAACTGCAGAGACCTTCTCCGCCATATCAACAATAGGTGTACTTGTCTATA TAGTTAAAAAATATGGTGCCTCTATTGGGGCATTTGCTGATAAACTCAATGAGCAAAAAA TTGCCCAACTGGAAGAAGTGAAACAGGCTTCCATCAAACAAATCCAGGATGCAATTGATC TGGAGAAATCACAGCAGGCACTGGTTCAAAAGCGCCATTACCTTTTTGATGTCCAGAGGA ATAACATTGCTATGGCCTTGGAGGTTACTTACCGGGAACGGCTGCATAGAGTATACAAGG AGATAAAGAATCGCCTGGACTATCACATCTCTGTACAGAATATGATGCGTCAGAAGGAAC AAGAGCACATGATAAGATGGGTGGAGAAGCACGTGGTGCAGAGCATCTCCGCACAGCAGG AGAAGGAGACAATTGCCAAGTGCATTGCAGATCTAAAGCTGCTCGCAAAGAAGGCTCAAG CACAGCCAGTTCTGTAATTGCATCCAGCCCAGTTGAGATAGCTAGAAACATTTGACTGAC TAAATGGAAACTAGTCTGTGAGACAAAATCTTTCTGTATTGCTATCTACTGAAGTTAAGT TTATCTTTCTAAAAGAAAAAAAAATGAAGTGTTTGTTTCATATAATGAGAGAATTACAAC AGTCTATTGGCCAGTAAGATGTTTTTCTCATCCTTCTTGCTCTGCATTTTGAATTGTTCC ATGAAGACTTTTGAATAAGCAGTTTGCATTTAATACAATCTGGTACCTGGCTAAAGAGTT ATCAGGTTATAGTTTAAATTTGTAATTAATTCAACCATCTAACAATAAAGTGACAGTTAA AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 9-126, + strand, RNAz p=0.719176 | |
| 9-126, - strand, RNAz p=0.719176 | |
| 9-124, + strand, RNAz p=0.679601 | |
| 9-124, - strand, RNAz p=0.679601 | |
| 720-839, + strand, RNAz p=0.901415 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 9-126, + strand, RNAz p=0.719176 | |
| 9-126, - strand, RNAz p=0.719176 | |
| 9-124, + strand, RNAz p=0.679601 | |
| 9-124, - strand, RNAz p=0.679601 | |
| 720-839, + strand, RNAz p=0.901415 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001002015, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr3 (27769357-27769232) | |
| 1-126, gnl|canFam2|chr6 (43686482-43686222) | |
| 1-126, gnl|dasNov1|scaffold_4801 (15069-15320) | |
| 1-126, gnl|echTel1|scaffold_299433 (43955-43702) | |
| 1-126, gnl|hg17|chr1 (111704075-111704319) | |
| 1-126, gnl|Hg17|chr1 (111704121-111704245) | |
| 1-126, gnl|loxAfr1|scaffold_6961 (45819-46066) | |
| 1-126, gnl|mm7|chr3 (105777607-105777373) | |
| 1-126, gnl|Mm7|chr3 (105777559-105777436) | |
| 1-126, gnl|monDom2|scaffold_0 (4376390-4376162) | |
| 1-126, gnl|oryCun1|scaffold_199540 (49931-49701) | |
| 1-126, gnl|panTro1|chr1 (110563260-110563016) | |
| 1-126, gnl|rheMac2|chr1 (114449046-114449290) | |
| 1-126, gnl|rn3|chr2 (201169401-201169178) | |
| 308-473, gnl|bosTau2|chr3 (27759470-27759305) | |
| 308-473, gnl|canFam2|chr6 (43679949-43679772) | |
| 308-473, gnl|danRer3|chr8 (21600783-21600960) | |
| 308-473, gnl|dasNov1|scaffold_34903 (43249-43074) | |
| 308-473, gnl|echTel1|scaffold_185109 (1916-2093) | |
| 308-473, gnl|fr1|chrUn (238723875-238723704) | |
| 308-473, gnl|galGal2|chr26 (1794734-1794908) | |
| 308-473, gnl|hg17|chr1 (111710748-111710925) | |
| 308-473, gnl|Hg17|chr1 (111710748-111710913) | |
| 308-473, gnl|loxAfr1|scaffold_6961 (51183-51359) | |
| 308-473, gnl|mm7|chr3 (105772473-105772296) | |
| 308-473, gnl|Mm7|chr3 (105772471-105772306) | |
| 308-473, gnl|monDom2|scaffold_0 (4367769-4367592) | |
| 308-473, gnl|oryCun1|scaffold_127851 (71-248) | |
| 308-473, gnl|panTro1|chr1 (110556429-110556252) | |
| 308-473, gnl|rheMac2|chr1 (114455671-114455848) | |
| 308-473, gnl|rn3|chr2 (201163622-201163445) | |
| 308-473, gnl|tetNig1|chr9 (2863845-2864013) | |
| 308-473, gnl|xenTro1|scaffold_416 (561294-561467) | |
| 641-1218, gnl|bosTau2|chr14 (43862535-43863085) | |
| 641-1218, gnl|Hg17|chr6 (139977484-139976878) | |
| 641-1218, gnl|Mm7|chr3 (157318735-157319257) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr3 (27769357-27769232) | |
| 1-126, gnl|canFam2|chr6 (43686482-43686222) | |
| 1-126, gnl|dasNov1|scaffold_4801 (15069-15320) | |
| 1-126, gnl|echTel1|scaffold_299433 (43955-43702) | |
| 1-126, gnl|hg17|chr1 (111704075-111704319) | |
| 1-126, gnl|Hg17|chr1 (111704121-111704245) | |
| 1-126, gnl|loxAfr1|scaffold_6961 (45819-46066) | |
| 1-126, gnl|mm7|chr3 (105777607-105777373) | |
| 1-126, gnl|Mm7|chr3 (105777559-105777436) | |
| 1-126, gnl|monDom2|scaffold_0 (4376390-4376162) | |
| 1-126, gnl|oryCun1|scaffold_199540 (49931-49701) | |
| 1-126, gnl|panTro1|chr1 (110563260-110563016) | |
| 1-126, gnl|rheMac2|chr1 (114449046-114449290) | |
| 1-126, gnl|rn3|chr2 (201169401-201169178) | |
| 308-473, gnl|bosTau2|chr3 (27759470-27759305) | |
| 308-473, gnl|canFam2|chr6 (43679949-43679772) | |
| 308-473, gnl|danRer3|chr8 (21600783-21600960) | |
| 308-473, gnl|dasNov1|scaffold_34903 (43249-43074) | |
| 308-473, gnl|echTel1|scaffold_185109 (1916-2093) | |
| 308-473, gnl|fr1|chrUn (238723875-238723704) | |
| 308-473, gnl|galGal2|chr26 (1794734-1794908) | |
| 308-473, gnl|hg17|chr1 (111710748-111710925) | |
| 308-473, gnl|Hg17|chr1 (111710748-111710913) | |
| 308-473, gnl|loxAfr1|scaffold_6961 (51183-51359) | |
| 308-473, gnl|mm7|chr3 (105772473-105772296) | |
| 308-473, gnl|Mm7|chr3 (105772471-105772306) | |
| 308-473, gnl|monDom2|scaffold_0 (4367769-4367592) | |
| 308-473, gnl|oryCun1|scaffold_127851 (71-248) | |
| 308-473, gnl|panTro1|chr1 (110556429-110556252) | |
| 308-473, gnl|rheMac2|chr1 (114455671-114455848) | |
| 308-473, gnl|rn3|chr2 (201163622-201163445) | |
| 308-473, gnl|tetNig1|chr9 (2863845-2864013) | |
| 308-473, gnl|xenTro1|scaffold_416 (561294-561467) | |
| 641-1218, gnl|bosTau2|chr14 (43862535-43863085) | |
| 641-1218, gnl|Hg17|chr6 (139977484-139976878) | |
| 641-1218, gnl|Mm7|chr3 (157318735-157319257) |
| Expressed library(ies): 88 entry(ies) | More info |
| Expressed library(ies): 88 entry(ies) | Help | Less info |
| cbe (4.54545) | |
| isp (3.90977) | |
| hea (3.88548) | |
| bfe (3.74644) | |
| vin (3.65813) | |
| tbr (3.5461) | |
| fco (2.67254) | |
| ldo (2.52207) | |
| mgp (2.30681) | |
| lyg (1.86344) | |
| ste (1.75771) | |
| sug (1.65479) | |
| kid (1.29735) | |
| mas (1.26183) | |
| sto (1.25877) | |
| spc (1.24702) | |
| tes (1.24688) | |
| rec (1.21149) | |
| cte (1.17096) | |
| ret (1.1586) | |
| spl (1.14548) | |
| thg (1.14112) | |
| pro (1.02407) | |
| bla (0.994777) | |
| col (0.975039) | |
| mga (0.96123) | |
| nlu (0.958405) | |
| che (0.954198) | |
| sme (0.91631) | |
| sag (0.913576) | |
| lun (0.902935) | |
| gul (0.887942) | |
| ski (0.880411) | |
| fbs (0.876732) | |
| tra (0.861645) | |
| hyp (0.85702) | |
| ssp (0.813118) | |
| lin (0.728014) | |
| cst (0.700182) | |
| sin (0.69979) | |
| hlv (0.696282) | |
| duo (0.691204) | |
| mcp (0.682594) | |
| nje (0.66368) | |
| nms (0.641574) | |
| fat (0.58971) | |
| aor (0.585823) | |
| cmu (0.55918) | |
| ton (0.526501) | |
| ova (0.516529) | |
| cki (0.495704) | |
| nco (0.485201) | |
| pgl (0.473934) | |
| amn (0.417711) | |
| pla (0.401016) | |
| ill (0.351185) | |
| jca (0.34188) | |
| nbm (0.297974) | |
| liv (0.292569) | |
| nca (0.273748) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 88 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (4.54545) | |
| isp (3.90977) | |
| hea (3.88548) | |
| bfe (3.74644) | |
| vin (3.65813) | |
| tbr (3.5461) | |
| fco (2.67254) | |
| ldo (2.52207) | |
| mgp (2.30681) | |
| lyg (1.86344) | |
| ste (1.75771) | |
| sug (1.65479) | |
| kid (1.29735) | |
| mas (1.26183) | |
| sto (1.25877) | |
| spc (1.24702) | |
| tes (1.24688) | |
| rec (1.21149) | |
| cte (1.17096) | |
| ret (1.1586) | |
| spl (1.14548) | |
| thg (1.14112) | |
| pro (1.02407) | |
| bla (0.994777) | |
| col (0.975039) | |
| mga (0.96123) | |
| nlu (0.958405) | |
| che (0.954198) | |
| sme (0.91631) | |
| sag (0.913576) | |
| lun (0.902935) | |
| gul (0.887942) | |
| ski (0.880411) | |
| fbs (0.876732) | |
| tra (0.861645) | |
| hyp (0.85702) | |
| ssp (0.813118) | |
| lin (0.728014) | |
| cst (0.700182) | |
| sin (0.69979) | |
| hlv (0.696282) | |
| duo (0.691204) | |
| mcp (0.682594) | |
| nje (0.66368) | |
| nms (0.641574) | |
| fat (0.58971) | |
| aor (0.585823) | |
| cmu (0.55918) | |
| ton (0.526501) | |
| ova (0.516529) | |
| cki (0.495704) | |
| nco (0.485201) | |
| pgl (0.473934) | |
| amn (0.417711) | |
| pla (0.401016) | |
| ill (0.351185) | |
| jca (0.34188) | |
| nbm (0.297974) | |
| liv (0.292569) | |
| nca (0.273748) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jej (0.0989218) | |
| eje (0.0988338) |