Non-Coding RNA Search

Ss1.1-Tra1-TCH01H020031.5

Sequence:


               
               CCCAGGAGACATTCAGGAGAGCCTGTCCTATTCTTGGAGAGGTCCTGACCAGGAGGATGC
TGCTGCTCTTGGGGTCACTGCTATGCGGGGGGCTGTTGCCCCAGGCCCAAGGGAAGGCCC
AGCACTTGGTCTTCATTCGAATCAGCAAGAATCAGCTGGAAACAGACATTTCAGACATGT
TCTTGAAACACCATGTCCTGGATCGCTTGGCCAAGATCCCCGTGATGGGAGCCACAAGTG
AAGGCGCCACCATCCTGGACCACCTGCCTTTCGTCAGAAAAGGCCTCTCCAAGAAGAGCA
GTGGGCTGGACCTGTCGCTGGTCACAGACCTGCTCTTGGGGCAGAGCCTCCCACCACTAG
GGAAGCTTCTCCAGGCAGGTGGGTTGGTCATAGAAGATGCCAAAGGACCCGAGGTCACCC
TGCAAATCCTGAGTGACAGCCTGCTGCAGGTCACATTGCGAAACAAACTGTACCTCTCGC
TCCAGAGGATCCTGCGGTTCAAAGTCATCAAGAACATCCGCATCGGGGTGCGGCTGGAGC
AGATAGGGAACAAGACCAACGTGGCCTTCGAGGAGTGCCACACCCCACCAGGGTTCCTGA
ACATCGAGGTTCTGGAGCACATGGGCCTCCTCCTGGTGAACGAAGCTCTGAAGTTGGCGA
CAGATGTCCTAGACAAGGCATTGCCCTTCCTCCTGCAGAAGATAGTGTGCCCCCTGGCCA
CCACCCTGCTCAACTTGCTGCTGGAAGACCTGTTACACATCACTCTGCCCCCAACCATCT
CGGACCCAGAAGACTTCCAGTACCACGTCACCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGAGACATTCAGGAGAGCCTGTCCTATTCTTGGAGAGGTCCTGACCAGGAGGATGC
TGCTGCTCTTGGGGTCACTGCTATGCGGGGGGCTGTTGCCCCAGGCCCAAGGGAAGGCCC
AGCACTTGGTCTTCATTCGAATCAGCAAGAATCAGCTGGAAACAGACATTTCAGACATGT
TCTTGAAACACCATGTCCTGGATCGCTTGGCCAAGATCCCCGTGATGGGAGCCACAAGTG
AAGGCGCCACCATCCTGGACCACCTGCCTTTCGTCAGAAAAGGCCTCTCCAAGAAGAGCA
GTGGGCTGGACCTGTCGCTGGTCACAGACCTGCTCTTGGGGCAGAGCCTCCCACCACTAG
GGAAGCTTCTCCAGGCAGGTGGGTTGGTCATAGAAGATGCCAAAGGACCCGAGGTCACCC
TGCAAATCCTGAGTGACAGCCTGCTGCAGGTCACATTGCGAAACAAACTGTACCTCTCGC
TCCAGAGGATCCTGCGGTTCAAAGTCATCAAGAACATCCGCATCGGGGTGCGGCTGGAGC
AGATAGGGAACAAGACCAACGTGGCCTTCGAGGAGTGCCACACCCCACCAGGGTTCCTGA
ACATCGAGGTTCTGGAGCACATGGGCCTCCTCCTGGTGAACGAAGCTCTGAAGTTGGCGA
CAGATGTCCTAGACAAGGCATTGCCCTTCCTCCTGCAGAAGATAGTGTGCCCCCTGGCCA
CCACCCTGCTCAACTTGCTGCTGGAAGACCTGTTACACATCACTCTGCCCCCAACCATCT
CGGACCCAGAAGACTTCCAGTACCACGTCACCACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8VEH9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8VEH9_MOUSE

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               163-384, gnl|bosTau2|chr13 (43665632-43665411)
               

               
               163-384, gnl|canFam2|chr24 (25509067-25509793)
               

               
               163-384, gnl|hg17|chr20 (31369155-31369860)
               

               
               163-384, gnl|Hg17|chr20 (31369509-31369734)
               

               
               163-384, gnl|loxAfr1|scaffold_30903 (162-983)
               

               
               163-384, gnl|mm7|chr2 (153965327-153966154)
               

               
               163-384, gnl|Mm7|chr2 (153965793-153966014)
               

               
               163-384, gnl|oryCun1|scaffold_81879 (511-1107)
               

               
               163-384, gnl|panTro1|chr21 (33346813-33347518)
               

               
               163-384, gnl|rheMac2|chr10 (31268100-31267394)
               

               
               163-384, gnl|rn3|chr3 (144545254-144546088)
               


               
               486-619, gnl|bosTau2|chr13 (43661748-43661615)
               

               
               486-619, gnl|Hg17|chr20 (31373235-31373375)
               

               
               486-619, gnl|Mm7|chr2 (153968919-153969052)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-384, gnl|bosTau2|chr13 (43665632-43665411)
               

               
               163-384, gnl|canFam2|chr24 (25509067-25509793)
               

               
               163-384, gnl|hg17|chr20 (31369155-31369860)
               

               
               163-384, gnl|Hg17|chr20 (31369509-31369734)
               

               
               163-384, gnl|loxAfr1|scaffold_30903 (162-983)
               

               
               163-384, gnl|mm7|chr2 (153965327-153966154)
               

               
               163-384, gnl|Mm7|chr2 (153965793-153966014)
               

               
               163-384, gnl|oryCun1|scaffold_81879 (511-1107)
               

               
               163-384, gnl|panTro1|chr21 (33346813-33347518)
               

               
               163-384, gnl|rheMac2|chr10 (31268100-31267394)
               

               
               163-384, gnl|rn3|chr3 (144545254-144546088)
               


               
               486-619, gnl|bosTau2|chr13 (43661748-43661615)
               

               
               486-619, gnl|Hg17|chr20 (31373235-31373375)
               

               
               486-619, gnl|Mm7|chr2 (153968919-153969052)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	163-384, gnl\|bosTau2\|chr13 (43665632-43665411)
	163-384, gnl\|canFam2\|chr24 (25509067-25509793)
	163-384, gnl\|hg17\|chr20 (31369155-31369860)
	163-384, gnl\|Hg17\|chr20 (31369509-31369734)
	163-384, gnl\|loxAfr1\|scaffold_30903 (162-983)
	163-384, gnl\|mm7\|chr2 (153965327-153966154)
	163-384, gnl\|Mm7\|chr2 (153965793-153966014)
	163-384, gnl\|oryCun1\|scaffold_81879 (511-1107)
	163-384, gnl\|panTro1\|chr21 (33346813-33347518)
	163-384, gnl\|rheMac2\|chr10 (31268100-31267394)
	163-384, gnl\|rn3\|chr3 (144545254-144546088)

	486-619, gnl\|bosTau2\|chr13 (43661748-43661615)
	486-619, gnl\|Hg17\|chr20 (31373235-31373375)
	486-619, gnl\|Mm7\|chr2 (153968919-153969052)