Ss1.1-Tra1-TCH01H040077.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGCGGAAGGGGCGGGGCTCGGCGGTCCGAGTCTCCGTGCTGCCGCTACCGCCGCCAGA GTCGGAGCTGGCTGGGCCGCCAAGGCAAGATGGTGGACTACAGCGTGTGGGATCACATCG AGGTGTCTGACGATGAAGACGAGACGCACCCCAATATCGACACTGCCAGCCTCTTCCGCT GGAGGCACCAGGCCCGGGTGGAGCGCATGGAGCAGTTCCAGAAAGAGAAGGAGGAGCTGG ACCGGGGCTGCCGCGAGTGCAAGCGCAAAGTGGCCGAGTGTCAGCGGAAGCTGAAGGAGC TGGAGGTAGCTGAGGGCGAGGGCGGCGAGGCCGAGCTGGAACGGCTCCAGGCCGAGGCAC AGCAGCTGCTCAAGGAGGAGAGGAGCTGGGAGCAGAAGCTGGAGGAGATGCGCAAGAAGG AGAAGAGCATGCCCTGGAACGTGGACACACTGAGCAAGGATGGCTTCAGCAAGAGCATGG TCAATACCAAGCCTGAGCAGGCGGAGGAGGAGTCGGAGGAGGTGAGGGAGCAGAAACACA AAACCTTCGTGGAAAAGTATGAGAAACAGATCAAGCACTTTGGCATGCTCCGCCGCTGGG ACGACAGCCAGAAGTACTTGTCAGACAATGTCCACCTGGTGTGCGAGGAGACCGCCAACT ACTTGGTCATCTGGTGCATTGACCTAGAGGTAGAGGAGAAATGTGCACTCATGGAGCAGG TAGCCCACCAGACCATTGTCATGCAGTTCATCCTAGAGCTGGCCAAGAGCCTAAAGGTGG ACCCCCGTGCCTGCTTCCGGCAGTTCTTCACGAAGATCAAGACAGCCGATCGGCAGTACA TGGAGGGCTTCAACGACGAGCTGGAGGCCTTCAAAGACCGTGTGCGGGGCCGCGCCAAGC TGCGCATTGAGAAGGCCATGAAGGAGTATGAGGAGGAGGAACGCAAGAAGCGGCTCGGGC CTGGTGGCTTGGACCCTGTCGAGGTCTACGAGTCCCTCCCTGAGGAACTCCAGAAATGCT TTGATGCGAAGGACGTTCAGATGCTCCAAGACGCCATCAGCAAGATGGACCCCACCGACG CGAAGTACCACATGCAGCGCTGCATCGACTCCGGCCTCTGGGTCCCCAACTCCAAGTCTA GCGAGGCCAAGGAGGGGGAAGAGGCGGGTCCTGGGGACCCTTTGCTGGAAGCTGCCTCCA AGTCGGGTGACGAGAAAGATGTCAGCGCGTGACCTGCCCCAGGCACCGCCTGCCTGCCTG CAGGCCCCTGTGCAACCCTTTTCAGAAAACAAATAGATGCCATCTTCCCAGCTCCTGGCT TCCTCCACTTTTGCTGCTCCTTGACCTAGCCTGGAGGGACCTGCTCACCCCCTCCACTGC CCCCGCCCCCCAGCGCTCATCCAAGTCTCTGCTTTGAGTCAAGGGGCTTCACTGCCTGCA GCCCCCCCATCAGCGTTATGCCAAAGGCCCGGGGGTCCAGGGAGGGGCAGAGGTCGCCAG GCTGGTCCTCAGGGTGGGGGTGGGGTCCCCAGCCGAGGAGCCTGCTCCAGTCACCGTGGG CTGTTTTCACTGTTTGTCCGCTGTCTCCTCTATAGTAAAGAGCAATTAGCTTCCAATAAA GGATTTCAGATGCTCCAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGCGGAAGGGGCGGGGCTCGGCGGTCCGAGTCTCCGTGCTGCCGCTACCGCCGCCAGA GTCGGAGCTGGCTGGGCCGCCAAGGCAAGATGGTGGACTACAGCGTGTGGGATCACATCG AGGTGTCTGACGATGAAGACGAGACGCACCCCAATATCGACACTGCCAGCCTCTTCCGCT GGAGGCACCAGGCCCGGGTGGAGCGCATGGAGCAGTTCCAGAAAGAGAAGGAGGAGCTGG ACCGGGGCTGCCGCGAGTGCAAGCGCAAAGTGGCCGAGTGTCAGCGGAAGCTGAAGGAGC TGGAGGTAGCTGAGGGCGAGGGCGGCGAGGCCGAGCTGGAACGGCTCCAGGCCGAGGCAC AGCAGCTGCTCAAGGAGGAGAGGAGCTGGGAGCAGAAGCTGGAGGAGATGCGCAAGAAGG AGAAGAGCATGCCCTGGAACGTGGACACACTGAGCAAGGATGGCTTCAGCAAGAGCATGG TCAATACCAAGCCTGAGCAGGCGGAGGAGGAGTCGGAGGAGGTGAGGGAGCAGAAACACA AAACCTTCGTGGAAAAGTATGAGAAACAGATCAAGCACTTTGGCATGCTCCGCCGCTGGG ACGACAGCCAGAAGTACTTGTCAGACAATGTCCACCTGGTGTGCGAGGAGACCGCCAACT ACTTGGTCATCTGGTGCATTGACCTAGAGGTAGAGGAGAAATGTGCACTCATGGAGCAGG TAGCCCACCAGACCATTGTCATGCAGTTCATCCTAGAGCTGGCCAAGAGCCTAAAGGTGG ACCCCCGTGCCTGCTTCCGGCAGTTCTTCACGAAGATCAAGACAGCCGATCGGCAGTACA TGGAGGGCTTCAACGACGAGCTGGAGGCCTTCAAAGACCGTGTGCGGGGCCGCGCCAAGC TGCGCATTGAGAAGGCCATGAAGGAGTATGAGGAGGAGGAACGCAAGAAGCGGCTCGGGC CTGGTGGCTTGGACCCTGTCGAGGTCTACGAGTCCCTCCCTGAGGAACTCCAGAAATGCT TTGATGCGAAGGACGTTCAGATGCTCCAAGACGCCATCAGCAAGATGGACCCCACCGACG CGAAGTACCACATGCAGCGCTGCATCGACTCCGGCCTCTGGGTCCCCAACTCCAAGTCTA GCGAGGCCAAGGAGGGGGAAGAGGCGGGTCCTGGGGACCCTTTGCTGGAAGCTGCCTCCA AGTCGGGTGACGAGAAAGATGTCAGCGCGTGACCTGCCCCAGGCACCGCCTGCCTGCCTG CAGGCCCCTGTGCAACCCTTTTCAGAAAACAAATAGATGCCATCTTCCCAGCTCCTGGCT TCCTCCACTTTTGCTGCTCCTTGACCTAGCCTGGAGGGACCTGCTCACCCCCTCCACTGC CCCCGCCCCCCAGCGCTCATCCAAGTCTCTGCTTTGAGTCAAGGGGCTTCACTGCCTGCA GCCCCCCCATCAGCGTTATGCCAAAGGCCCGGGGGTCCAGGGAGGGGCAGAGGTCGCCAG GCTGGTCCTCAGGGTGGGGGTGGGGTCCCCAGCCGAGGAGCCTGCTCCAGTCACCGTGGG CTGTTTTCACTGTTTGTCCGCTGTCTCCTCTATAGTAAAGAGCAATTAGCTTCCAATAAA GGATTTCAGATGCTCCAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 189-1410, - strand, RNAz p=0.995682 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 189-1410, - strand, RNAz p=0.995682 |
| Aligned organism(s): 86 entry(ies) | More info |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
| 189-473, gnl|bosTau2|chr7 (9413607-9413891) | |
| 189-473, gnl|canFam2|chr20 (53736269-53736549) | |
| 189-473, gnl|canFam2|chr20 (53736553-53736273) | |
| 189-473, gnl|danRer3|chrNA (129349105-129349376) | |
| 189-473, gnl|danRer3|chrNA (129349380-129349109) | |
| 189-473, gnl|echTel1|scaffold_242063 (164-495) | |
| 189-473, gnl|echTel1|scaffold_242063 (499-164) | |
| 189-473, gnl|fr1|chrUn (67759733-67759453) | |
| 189-473, gnl|fr1|chrUn (67759449-67759729) | |
| 189-473, gnl|hg17|chr16 (28332691-28332938) | |
| 189-473, gnl|Hg17|chr19 (10367882-10367604) | |
| 189-473, gnl|hg17|chr5 (157346870-157347144) | |
| 189-473, gnl|mm7|chr9 (21019787-21019521) | |
| 189-473, gnl|mm7|chr9 (21019506-21019787) | |
| 189-473, gnl|Mm7|chr9 (21019786-21019505) | |
| 189-473, gnl|monDom2|scaffold_106 (2064933-2064653) | |
| 189-473, gnl|monDom2|scaffold_106 (2064650-2064933) | |
| 189-473, gnl|panTro1|chr20 (10757890-10757628) | |
| 189-473, gnl|panTro1|chr4_random (17645833-17646107) | |
| 189-473, gnl|rheMac2|chr19 (10212781-10212510) | |
| 189-473, gnl|rheMac2|chr6 (154389096-154389374) | |
| 189-473, gnl|rn3|chr8 (20169084-20168810) | |
| 189-473, gnl|rn3|chr8 (20168806-20169087) | |
| 189-473, gnl|tetNig1|chr18 (8999836-8999542) | |
| 189-473, gnl|tetNig1|chr18 (8999538-8999836) | |
| 189-473, gnl|xenTro1|scaffold_571 (200740-201018) | |
| 582-707, gnl|bosTau2|chr7 (9414454-9414579) | |
| 582-707, gnl|canFam2|chr20 (53737246-53737109) | |
| 582-707, gnl|canFam2|chr20 (53737227-53737127) | |
| 582-707, gnl|danRer3|chr10 (2576822-2576697) | |
| 582-707, gnl|dasNov1|scaffold_9300 (12670-12798) | |
| 582-707, gnl|echTel1|scaffold_242063 (721-611) | |
| 582-707, gnl|echTel1|scaffold_242063 (738-616) | |
| 582-707, gnl|fr1|chrUn (67758566-67758692) | |
| 582-707, gnl|fr1|chrUn (67758582-67758681) | |
| 582-707, gnl|hg17|chr19 (10366894-10367031) | |
| 582-707, gnl|Hg17|chr19 (10367020-10366895) | |
| 582-707, gnl|hg17|chr5 (157346654-157346753) | |
| 582-707, gnl|loxAfr1|scaffold_844 (92349-92209) | |
| 582-707, gnl|mm7|chr9 (21018762-21018898) | |
| 582-707, gnl|mm7|chr9 (21018780-21018878) | |
| 582-707, gnl|Mm7|chr9 (21018887-21018764) | |
| 582-707, gnl|monDom2|scaffold_106 (2062948-2063079) | |
| 582-707, gnl|monDom2|scaffold_106 (2062963-2063063) | |
| 582-707, gnl|oryCun1|scaffold_187007 (35664-35535) | |
| 582-707, gnl|oryCun1|scaffold_187007 (35654-35555) | |
| 582-707, gnl|panTro1|chr20 (10756900-10757037) | |
| 582-707, gnl|panTro1|chr4_random (17645617-17645716) | |
| 582-707, gnl|rheMac2|chr19 (10211794-10211931) | |
| 582-707, gnl|rheMac2|chr6 (154388880-154388979) | |
| 582-707, gnl|rn3|chr8 (20168052-20168189) | |
| 582-707, gnl|rn3|chr8 (20168071-20168169) | |
| 582-707, gnl|tetNig1|chr18 (8999135-8999235) | |
| 582-707, gnl|tetNig1|chr3 (11617553-11617428) | |
| 582-707, gnl|xenTro1|scaffold_571 (199554-199691) | |
| 582-707, gnl|xenTro1|scaffold_571 (199573-199673) | |
| 820-1005, gnl|bosTau2|chr7 (9415235-9415420) | |
| 820-1005, gnl|canFam2|chr20 (53737927-53738104) | |
| 820-1005, gnl|canFam2|chr20 (53738110-53737930) | |
| 820-1005, gnl|danRer3|chrNA (209055652-209055819) | |
| 820-1005, gnl|danRer3|chrNA (209055838-209055655) | |
| 820-1005, gnl|echTel1|scaffold_242063 (861-1022) | |
| 820-1005, gnl|echTel1|scaffold_242063 (1028-864) | |
| 820-1005, gnl|fr1|chrUn (67758144-67757967) | |
| 820-1005, gnl|fr1|chrUn (67757948-67758141) | |
| 820-1005, gnl|hg17|chr16 (28333447-28333627) | |
| 820-1005, gnl|Hg17|chr19 (10365119-10364934) | |
| 820-1005, gnl|hg17|chr5 (157346342-157346522) | |
| 820-1005, gnl|loxAfr1|scaffold_64309 (7719-7896) | |
| 820-1005, gnl|mm7|chr9 (21017697-21017520) | |
| 820-1005, gnl|mm7|chr9 (21017514-21017694) | |
| 820-1005, gnl|Mm7|chr9 (21017695-21017510) | |
| 820-1005, gnl|monDom2|scaffold_106 (2062289-2062123) | |
| 820-1005, gnl|monDom2|scaffold_106 (2062106-2062286) | |
| 820-1005, gnl|panTro1|chr18 (29035447-29035627) | |
| 820-1005, gnl|panTro1|chr4_random (17645305-17645485) | |
| 820-1005, gnl|rheMac2|chr19 (10210663-10210487) | |
| 820-1005, gnl|rheMac2|chr6 (154388563-154388748) | |
| 820-1005, gnl|rn3|chr8 (20166668-20166491) | |
| 820-1005, gnl|rn3|chr8 (20166485-20166665) | |
| 820-1005, gnl|tetNig1|chr18 (8998879-8998712) | |
| 820-1005, gnl|tetNig1|chr18 (8998695-8998876) | |
| 820-1005, gnl|xenTro1|scaffold_571 (198345-198519) | |
| 1070-1635, gnl|bosTau2|chr7 (9417180-9417743) | |
| 1070-1635, gnl|Hg17|chr19 (10363390-10362809) | |
| 1070-1635, gnl|Mm7|chr9 (21016529-21015992) |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 189-473, gnl|bosTau2|chr7 (9413607-9413891) | |
| 189-473, gnl|canFam2|chr20 (53736269-53736549) | |
| 189-473, gnl|canFam2|chr20 (53736553-53736273) | |
| 189-473, gnl|danRer3|chrNA (129349105-129349376) | |
| 189-473, gnl|danRer3|chrNA (129349380-129349109) | |
| 189-473, gnl|echTel1|scaffold_242063 (164-495) | |
| 189-473, gnl|echTel1|scaffold_242063 (499-164) | |
| 189-473, gnl|fr1|chrUn (67759733-67759453) | |
| 189-473, gnl|fr1|chrUn (67759449-67759729) | |
| 189-473, gnl|hg17|chr16 (28332691-28332938) | |
| 189-473, gnl|Hg17|chr19 (10367882-10367604) | |
| 189-473, gnl|hg17|chr5 (157346870-157347144) | |
| 189-473, gnl|mm7|chr9 (21019787-21019521) | |
| 189-473, gnl|mm7|chr9 (21019506-21019787) | |
| 189-473, gnl|Mm7|chr9 (21019786-21019505) | |
| 189-473, gnl|monDom2|scaffold_106 (2064933-2064653) | |
| 189-473, gnl|monDom2|scaffold_106 (2064650-2064933) | |
| 189-473, gnl|panTro1|chr20 (10757890-10757628) | |
| 189-473, gnl|panTro1|chr4_random (17645833-17646107) | |
| 189-473, gnl|rheMac2|chr19 (10212781-10212510) | |
| 189-473, gnl|rheMac2|chr6 (154389096-154389374) | |
| 189-473, gnl|rn3|chr8 (20169084-20168810) | |
| 189-473, gnl|rn3|chr8 (20168806-20169087) | |
| 189-473, gnl|tetNig1|chr18 (8999836-8999542) | |
| 189-473, gnl|tetNig1|chr18 (8999538-8999836) | |
| 189-473, gnl|xenTro1|scaffold_571 (200740-201018) | |
| 582-707, gnl|bosTau2|chr7 (9414454-9414579) | |
| 582-707, gnl|canFam2|chr20 (53737246-53737109) | |
| 582-707, gnl|canFam2|chr20 (53737227-53737127) | |
| 582-707, gnl|danRer3|chr10 (2576822-2576697) | |
| 582-707, gnl|dasNov1|scaffold_9300 (12670-12798) | |
| 582-707, gnl|echTel1|scaffold_242063 (721-611) | |
| 582-707, gnl|echTel1|scaffold_242063 (738-616) | |
| 582-707, gnl|fr1|chrUn (67758566-67758692) | |
| 582-707, gnl|fr1|chrUn (67758582-67758681) | |
| 582-707, gnl|hg17|chr19 (10366894-10367031) | |
| 582-707, gnl|Hg17|chr19 (10367020-10366895) | |
| 582-707, gnl|hg17|chr5 (157346654-157346753) | |
| 582-707, gnl|loxAfr1|scaffold_844 (92349-92209) | |
| 582-707, gnl|mm7|chr9 (21018762-21018898) | |
| 582-707, gnl|mm7|chr9 (21018780-21018878) | |
| 582-707, gnl|Mm7|chr9 (21018887-21018764) | |
| 582-707, gnl|monDom2|scaffold_106 (2062948-2063079) | |
| 582-707, gnl|monDom2|scaffold_106 (2062963-2063063) | |
| 582-707, gnl|oryCun1|scaffold_187007 (35664-35535) | |
| 582-707, gnl|oryCun1|scaffold_187007 (35654-35555) | |
| 582-707, gnl|panTro1|chr20 (10756900-10757037) | |
| 582-707, gnl|panTro1|chr4_random (17645617-17645716) | |
| 582-707, gnl|rheMac2|chr19 (10211794-10211931) | |
| 582-707, gnl|rheMac2|chr6 (154388880-154388979) | |
| 582-707, gnl|rn3|chr8 (20168052-20168189) | |
| 582-707, gnl|rn3|chr8 (20168071-20168169) | |
| 582-707, gnl|tetNig1|chr18 (8999135-8999235) | |
| 582-707, gnl|tetNig1|chr3 (11617553-11617428) | |
| 582-707, gnl|xenTro1|scaffold_571 (199554-199691) | |
| 582-707, gnl|xenTro1|scaffold_571 (199573-199673) | |
| 820-1005, gnl|bosTau2|chr7 (9415235-9415420) | |
| 820-1005, gnl|canFam2|chr20 (53737927-53738104) | |
| 820-1005, gnl|canFam2|chr20 (53738110-53737930) | |
| 820-1005, gnl|danRer3|chrNA (209055652-209055819) | |
| 820-1005, gnl|danRer3|chrNA (209055838-209055655) | |
| 820-1005, gnl|echTel1|scaffold_242063 (861-1022) | |
| 820-1005, gnl|echTel1|scaffold_242063 (1028-864) | |
| 820-1005, gnl|fr1|chrUn (67758144-67757967) | |
| 820-1005, gnl|fr1|chrUn (67757948-67758141) | |
| 820-1005, gnl|hg17|chr16 (28333447-28333627) | |
| 820-1005, gnl|Hg17|chr19 (10365119-10364934) | |
| 820-1005, gnl|hg17|chr5 (157346342-157346522) | |
| 820-1005, gnl|loxAfr1|scaffold_64309 (7719-7896) | |
| 820-1005, gnl|mm7|chr9 (21017697-21017520) | |
| 820-1005, gnl|mm7|chr9 (21017514-21017694) | |
| 820-1005, gnl|Mm7|chr9 (21017695-21017510) | |
| 820-1005, gnl|monDom2|scaffold_106 (2062289-2062123) | |
| 820-1005, gnl|monDom2|scaffold_106 (2062106-2062286) | |
| 820-1005, gnl|panTro1|chr18 (29035447-29035627) | |
| 820-1005, gnl|panTro1|chr4_random (17645305-17645485) | |
| 820-1005, gnl|rheMac2|chr19 (10210663-10210487) | |
| 820-1005, gnl|rheMac2|chr6 (154388563-154388748) | |
| 820-1005, gnl|rn3|chr8 (20166668-20166491) | |
| 820-1005, gnl|rn3|chr8 (20166485-20166665) | |
| 820-1005, gnl|tetNig1|chr18 (8998879-8998712) | |
| 820-1005, gnl|tetNig1|chr18 (8998695-8998876) | |
| 820-1005, gnl|xenTro1|scaffold_571 (198345-198519) | |
| 1070-1635, gnl|bosTau2|chr7 (9417180-9417743) | |
| 1070-1635, gnl|Hg17|chr19 (10363390-10362809) | |
| 1070-1635, gnl|Mm7|chr9 (21016529-21015992) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| cag (0.302389) | |
| nca (0.273748) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| cag (0.302389) | |
| nca (0.273748) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |