Ss1.1-Tra1-TCH01H050062.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAGGCCCGCAGGTCCCGAGGCCAGAAGTGTGCCTTGTACTGCTCATTGGGGTGCTGG TCAAACATGATGGGCAGGAACTCGTCCACGGGCAGCATTCGGCGCAGGGGCTGGGAGGCC AGCAGCTTGCGGGCTCCGGCCAGGCTCAGGACATAGGCCAGCGTCCAGTAGGAGTACCCT GCCACCACAAGCTGTGGCAGCCCCTCCACGGCTGCCTCCTCCTCGGGGTTCACCTGCTTC CGGCCGAGGTAGATTAGATCCCAAGGAAGCTTCTCCGCCTCCACCTCCTCCATCAGCCGC TCCAGCCGCCCCCTGAAGTTGCTCTCAAAGCGCACATCATCCTCAAACACCACGACCTGG GCCAGGCCCTGGGCAACCACCTCCTCCCAGATGGAGTAGTGGCTGAGGAAGCAGCCCACC TCGCCCTTGGTCAGCGTGCGGCCCGAGTAGGGGTCCTGGTAGCCGGGGAGCAGGTCCACG CCAAGCCTCCTCATGACACTGCTGTTGAGCATCCGGCCGTCCACGGCGTCCACCACCCGC CCGGCAATCTCCATCTCCCAGAGTGAGCTCAGCATGCGCTCTCGGCGGTCGGGCCGGCGG GCCAGGCTGATGACAAACACCTCATCAAACCCCATCTTGCTGGGCCTCTTCGGGGGCCGG GACACGTGAGCCGAGGCCCACATGGGGGGCCCATCCACCAGCGCTTCCAAGAGCAGATGG ATGAAGTTGACTCTCTCATCCTCCAGCCCCTGGTGGGATTTCACAGGCACGTTCATGTAC CCGTAACGGTGCTCGTTGCACACGTGCACTGAGACCCCGGCAGCCTGACAGGCGTAGGCA AAGACGATGATGTCGTCGAAGGGCCAGGTATAGTTGGGGTGAGGAGGGTAGAAGGAGAGC TGGCCTGTCCCCTCAGCCCGCAGGGATATCAGGAAGGTGGAGTGGACCATGGGGACGCGG AAGCAGCCCCGGCGCTGGCGGTTCTTGGTGGGGAAGTACTCAGCCGTGCGGCGGTAGTAG CCCTGGGGGGTGATCCCGCACCAGAAATTGGAGTAGTAGGTCTGGGAGTCCAGCATCGGG GCCACCACGGGCAGCTGCTGCTCTATCAGAAGCCGCAGTGTCTGGTTGTTGGTCAGAATA TTGTCTGTGTCTGCAAACAGGATATAGTCAGCCCCCCAGTCCCTAGCAAAGGTCAGGGCT TCTTGCTTCAGCTCCATCAGAAACTGGTGCCTTTCTTTGGTCCAGTGCTTAGGTCCCTCT TCATCTGGGTAGGACCTGGGCTCCCCCTCAGGCCTCCAGACCACAGCTGCATAGTCCTCG CCCACAGCAGCCAGCCACTCCTGCAGCATCTCTGTGGTGCTGTCCTCATTGTGGTCCGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAGGCCCGCAGGTCCCGAGGCCAGAAGTGTGCCTTGTACTGCTCATTGGGGTGCTGG TCAAACATGATGGGCAGGAACTCGTCCACGGGCAGCATTCGGCGCAGGGGCTGGGAGGCC AGCAGCTTGCGGGCTCCGGCCAGGCTCAGGACATAGGCCAGCGTCCAGTAGGAGTACCCT GCCACCACAAGCTGTGGCAGCCCCTCCACGGCTGCCTCCTCCTCGGGGTTCACCTGCTTC CGGCCGAGGTAGATTAGATCCCAAGGAAGCTTCTCCGCCTCCACCTCCTCCATCAGCCGC TCCAGCCGCCCCCTGAAGTTGCTCTCAAAGCGCACATCATCCTCAAACACCACGACCTGG GCCAGGCCCTGGGCAACCACCTCCTCCCAGATGGAGTAGTGGCTGAGGAAGCAGCCCACC TCGCCCTTGGTCAGCGTGCGGCCCGAGTAGGGGTCCTGGTAGCCGGGGAGCAGGTCCACG CCAAGCCTCCTCATGACACTGCTGTTGAGCATCCGGCCGTCCACGGCGTCCACCACCCGC CCGGCAATCTCCATCTCCCAGAGTGAGCTCAGCATGCGCTCTCGGCGGTCGGGCCGGCGG GCCAGGCTGATGACAAACACCTCATCAAACCCCATCTTGCTGGGCCTCTTCGGGGGCCGG GACACGTGAGCCGAGGCCCACATGGGGGGCCCATCCACCAGCGCTTCCAAGAGCAGATGG ATGAAGTTGACTCTCTCATCCTCCAGCCCCTGGTGGGATTTCACAGGCACGTTCATGTAC CCGTAACGGTGCTCGTTGCACACGTGCACTGAGACCCCGGCAGCCTGACAGGCGTAGGCA AAGACGATGATGTCGTCGAAGGGCCAGGTATAGTTGGGGTGAGGAGGGTAGAAGGAGAGC TGGCCTGTCCCCTCAGCCCGCAGGGATATCAGGAAGGTGGAGTGGACCATGGGGACGCGG AAGCAGCCCCGGCGCTGGCGGTTCTTGGTGGGGAAGTACTCAGCCGTGCGGCGGTAGTAG CCCTGGGGGGTGATCCCGCACCAGAAATTGGAGTAGTAGGTCTGGGAGTCCAGCATCGGG GCCACCACGGGCAGCTGCTGCTCTATCAGAAGCCGCAGTGTCTGGTTGTTGGTCAGAATA TTGTCTGTGTCTGCAAACAGGATATAGTCAGCCCCCCAGTCCCTAGCAAAGGTCAGGGCT TCTTGCTTCAGCTCCATCAGAAACTGGTGCCTTTCTTTGGTCCAGTGCTTAGGTCCCTCT TCATCTGGGTAGGACCTGGGCTCCCCCTCAGGCCTCCAGACCACAGCTGCATAGTCCTCG CCCACAGCAGCCAGCCACTCCTGCAGCATCTCTGTGGTGCTGTCCTCATTGTGGTCCGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 817-936, - strand, RNAz p=0.892814 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 817-936, - strand, RNAz p=0.892814 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 44-252, gnl|bosTau2|chr11 (78307003-78306794) | |
| 44-252, gnl|canFam2|chr9 (58455504-58455286) | |
| 44-252, gnl|danRer3|chr10 (3031416-3031197) | |
| 44-252, gnl|dasNov1|scaffold_33785 (8352-8571) | |
| 44-252, gnl|echTel1|scaffold_297834 (547-328) | |
| 44-252, gnl|fr1|chrUn (38765286-38765508) | |
| 44-252, gnl|galGal2|chr17 (5805018-5805234) | |
| 44-252, gnl|hg17|chr9 (128276233-128276452) | |
| 44-252, gnl|Hg17|chr9 (128276472-128276243) | |
| 44-252, gnl|loxAfr1|scaffold_17207 (47944-47725) | |
| 44-252, gnl|mm7|chr2 (29888216-29888435) | |
| 44-252, gnl|Mm7|chr2 (29888438-29888226) | |
| 44-252, gnl|monDom2|scaffold_51 (2946202-2946421) | |
| 44-252, gnl|panTro1|chr11 (113108674-113108893) | |
| 44-252, gnl|rheMac2|chr15 (10434055-10433836) | |
| 44-252, gnl|rn3|chr3 (8869631-8869850) | |
| 44-252, gnl|tetNig1|chr3 (11174726-11174943) | |
| 44-252, gnl|xenTro1|scaffold_4287 (10805-10595) | |
| 378-530, gnl|bosTau2|chr11 (78305198-78305046) | |
| 378-530, gnl|Hg17|chr9 (128273139-128272986) | |
| 378-530, gnl|Mm7|chr2 (29885450-29885298) | |
| 816-1030, gnl|bosTau2|chr7 (4835567-4835780) | |
| 816-1030, gnl|canFam2|chr20 (48267924-48267683) | |
| 816-1030, gnl|danRer3|chr1 (55683039-55683251) | |
| 816-1030, gnl|dasNov1|scaffold_1734 (85714-85492) | |
| 816-1030, gnl|echTel1|scaffold_286053 (10220-9989) | |
| 816-1030, gnl|fr1|chrUn (38763966-38764187) | |
| 816-1030, gnl|galGal2|chr17 (5803670-5803885) | |
| 816-1030, gnl|hg17|chr19 (17540299-17540540) | |
| 816-1030, gnl|Hg17|chr19 (17540523-17540310) | |
| 816-1030, gnl|loxAfr1|scaffold_18018 (4949-4711) | |
| 816-1030, gnl|mm7|chr8 (70085230-70085452) | |
| 816-1030, gnl|Mm7|chr8 (70085441-70085228) | |
| 816-1030, gnl|monDom2|scaffold_106 (1167441-1167209) | |
| 816-1030, gnl|oryCun1|scaffold_109374 (3598-3369) | |
| 816-1030, gnl|panTro1|chr20 (18532007-18532248) | |
| 816-1030, gnl|rheMac2|chr19 (17126428-17126669) | |
| 816-1030, gnl|rn3|chr16 (18816608-18816830) | |
| 816-1030, gnl|tetNig1|chr3 (11173407-11173625) | |
| 816-1030, gnl|xenTro1|scaffold_115 (131497-131735) | |
| 817-1028, gnl|bosTau2|chr11 (78300509-78300298) | |
| 817-1028, gnl|Hg17|chr9 (128266448-128266237) | |
| 817-1028, gnl|Mm7|chr2 (29880324-29880113) | |
| 1274-1380, gnl|bosTau2|chr11 (78299166-78299060) | |
| 1274-1380, gnl|canFam2|chr9 (58462506-58462391) | |
| 1274-1380, gnl|danRer3|chr10 (3048220-3048105) | |
| 1274-1380, gnl|dasNov1|scaffold_273743 (853-763) | |
| 1274-1380, gnl|echTel1|scaffold_324655 (4618-4503) | |
| 1274-1380, gnl|fr1|chrUn (38763325-38763440) | |
| 1274-1380, gnl|hg17|chr9 (128264699-128264814) | |
| 1274-1380, gnl|Hg17|chr9 (128264813-128264707) | |
| 1274-1380, gnl|loxAfr1|scaffold_16349 (361-476) | |
| 1274-1380, gnl|mm7|chr2 (29878332-29878447) | |
| 1274-1380, gnl|Mm7|chr2 (29878446-29878340) | |
| 1274-1380, gnl|monDom2|scaffold_51 (2939059-2939174) | |
| 1274-1380, gnl|oryCun1|scaffold_198463 (52756-52871) | |
| 1274-1380, gnl|panTro1|chr11 (113096906-113097021) | |
| 1274-1380, gnl|rheMac2|chr15 (10447097-10446982) | |
| 1274-1380, gnl|rn3|chr3 (8861106-8861221) | |
| 1274-1380, gnl|tetNig1|chr3 (11172814-11172929) | |
| 1274-1380, gnl|xenTro1|scaffold_4287 (15743-15653) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-252, gnl|bosTau2|chr11 (78307003-78306794) | |
| 44-252, gnl|canFam2|chr9 (58455504-58455286) | |
| 44-252, gnl|danRer3|chr10 (3031416-3031197) | |
| 44-252, gnl|dasNov1|scaffold_33785 (8352-8571) | |
| 44-252, gnl|echTel1|scaffold_297834 (547-328) | |
| 44-252, gnl|fr1|chrUn (38765286-38765508) | |
| 44-252, gnl|galGal2|chr17 (5805018-5805234) | |
| 44-252, gnl|hg17|chr9 (128276233-128276452) | |
| 44-252, gnl|Hg17|chr9 (128276472-128276243) | |
| 44-252, gnl|loxAfr1|scaffold_17207 (47944-47725) | |
| 44-252, gnl|mm7|chr2 (29888216-29888435) | |
| 44-252, gnl|Mm7|chr2 (29888438-29888226) | |
| 44-252, gnl|monDom2|scaffold_51 (2946202-2946421) | |
| 44-252, gnl|panTro1|chr11 (113108674-113108893) | |
| 44-252, gnl|rheMac2|chr15 (10434055-10433836) | |
| 44-252, gnl|rn3|chr3 (8869631-8869850) | |
| 44-252, gnl|tetNig1|chr3 (11174726-11174943) | |
| 44-252, gnl|xenTro1|scaffold_4287 (10805-10595) | |
| 378-530, gnl|bosTau2|chr11 (78305198-78305046) | |
| 378-530, gnl|Hg17|chr9 (128273139-128272986) | |
| 378-530, gnl|Mm7|chr2 (29885450-29885298) | |
| 816-1030, gnl|bosTau2|chr7 (4835567-4835780) | |
| 816-1030, gnl|canFam2|chr20 (48267924-48267683) | |
| 816-1030, gnl|danRer3|chr1 (55683039-55683251) | |
| 816-1030, gnl|dasNov1|scaffold_1734 (85714-85492) | |
| 816-1030, gnl|echTel1|scaffold_286053 (10220-9989) | |
| 816-1030, gnl|fr1|chrUn (38763966-38764187) | |
| 816-1030, gnl|galGal2|chr17 (5803670-5803885) | |
| 816-1030, gnl|hg17|chr19 (17540299-17540540) | |
| 816-1030, gnl|Hg17|chr19 (17540523-17540310) | |
| 816-1030, gnl|loxAfr1|scaffold_18018 (4949-4711) | |
| 816-1030, gnl|mm7|chr8 (70085230-70085452) | |
| 816-1030, gnl|Mm7|chr8 (70085441-70085228) | |
| 816-1030, gnl|monDom2|scaffold_106 (1167441-1167209) | |
| 816-1030, gnl|oryCun1|scaffold_109374 (3598-3369) | |
| 816-1030, gnl|panTro1|chr20 (18532007-18532248) | |
| 816-1030, gnl|rheMac2|chr19 (17126428-17126669) | |
| 816-1030, gnl|rn3|chr16 (18816608-18816830) | |
| 816-1030, gnl|tetNig1|chr3 (11173407-11173625) | |
| 816-1030, gnl|xenTro1|scaffold_115 (131497-131735) | |
| 817-1028, gnl|bosTau2|chr11 (78300509-78300298) | |
| 817-1028, gnl|Hg17|chr9 (128266448-128266237) | |
| 817-1028, gnl|Mm7|chr2 (29880324-29880113) | |
| 1274-1380, gnl|bosTau2|chr11 (78299166-78299060) | |
| 1274-1380, gnl|canFam2|chr9 (58462506-58462391) | |
| 1274-1380, gnl|danRer3|chr10 (3048220-3048105) | |
| 1274-1380, gnl|dasNov1|scaffold_273743 (853-763) | |
| 1274-1380, gnl|echTel1|scaffold_324655 (4618-4503) | |
| 1274-1380, gnl|fr1|chrUn (38763325-38763440) | |
| 1274-1380, gnl|hg17|chr9 (128264699-128264814) | |
| 1274-1380, gnl|Hg17|chr9 (128264813-128264707) | |
| 1274-1380, gnl|loxAfr1|scaffold_16349 (361-476) | |
| 1274-1380, gnl|mm7|chr2 (29878332-29878447) | |
| 1274-1380, gnl|Mm7|chr2 (29878446-29878340) | |
| 1274-1380, gnl|monDom2|scaffold_51 (2939059-2939174) | |
| 1274-1380, gnl|oryCun1|scaffold_198463 (52756-52871) | |
| 1274-1380, gnl|panTro1|chr11 (113096906-113097021) | |
| 1274-1380, gnl|rheMac2|chr15 (10447097-10446982) | |
| 1274-1380, gnl|rn3|chr3 (8861106-8861221) | |
| 1274-1380, gnl|tetNig1|chr3 (11172814-11172929) | |
| 1274-1380, gnl|xenTro1|scaffold_4287 (15743-15653) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |