Ss1.1-Tra1-TCH01H060025.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTACCAGGGCTGCAGAGAGCAAGCTAAGGTTGCTAACCAAACAAAGTAACTGCACTGACA ATGCCAATTTTTACGTTTGTTTCAGAACAAGGGACGCTCAAACCACCTGAGAAACGGACC AATGGGCTCCGAAGACCCTCCAGACAGGTGGATCCAGGTTTACCAAAGATGCAGGTCATT AGGAATTATTCTGGAACACCACCCCCTGCTCTTCATGAAGGACCCCCGTTACACATCCAG GCAGGAGATACAGTTGAACTTCTCAGAGGAGATGCACACAGTCTGTTTTGGCAGGGTAGA AATTTAGCATCTGGAGAGGTCGGATTTTTTCCAAGTGATGCCGTCAAACCTTGTCCATGT GTGCCCAAACCAGTAGATTATTCTTGCCAACCGTGGTATGCAGGAGCGATGGAAAGATTG CAGGCCGAGACTGAACTTATTAATAGGGTAAATAGTACTTACCTTGTGAGGCACAGGACC AAAGAGTCAGGAGAATATGCAATTAGCATTAAGTACAATAATGAAGCAAAGCACATCAAG ATTGTAACAAAAGATGGCTTTTTTCAAATTGCAGAAAATAGAAAGTTTAAAAGTTTAATG GAACTTGTGGAGTACTACAAGCACCATTCTCTTAAAGAAGGTTTCAGAACCTTGGATACA ACTCTGCAGTTTCCATACAAGGAGCCAGAACATTCAGCTGGACAGAGGGCTAACAGAGCG GGCAATCGCTTGCTGAGTCCAAAGGTGCTGGGCATCGCCGTCGCTCGCTATGACTTCTGC GCCAGGGACATGCGGGAACTGTCCTTGTTGAAAGGAGACATGGTGAAGATTTACACGAAG ATGAGCGCCAACGGCTGGTGGCGAGGAGAAGTGAACGGCAGGGTGGGCTGGTTTCCATCC ACGTATGTGGAAGAGGATGAATAATCTCCCCTCCAGCGTTGCACCCCACACCAGGAATTT CAGAGACGGGATCCACAGAAGGCTGTGCAGCGTTATGAATTCACTCAAGTGTTTAAAAAG CTGTCTTTCTGGCTATTCAACATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTACCAGGGCTGCAGAGAGCAAGCTAAGGTTGCTAACCAAACAAAGTAACTGCACTGACA ATGCCAATTTTTACGTTTGTTTCAGAACAAGGGACGCTCAAACCACCTGAGAAACGGACC AATGGGCTCCGAAGACCCTCCAGACAGGTGGATCCAGGTTTACCAAAGATGCAGGTCATT AGGAATTATTCTGGAACACCACCCCCTGCTCTTCATGAAGGACCCCCGTTACACATCCAG GCAGGAGATACAGTTGAACTTCTCAGAGGAGATGCACACAGTCTGTTTTGGCAGGGTAGA AATTTAGCATCTGGAGAGGTCGGATTTTTTCCAAGTGATGCCGTCAAACCTTGTCCATGT GTGCCCAAACCAGTAGATTATTCTTGCCAACCGTGGTATGCAGGAGCGATGGAAAGATTG CAGGCCGAGACTGAACTTATTAATAGGGTAAATAGTACTTACCTTGTGAGGCACAGGACC AAAGAGTCAGGAGAATATGCAATTAGCATTAAGTACAATAATGAAGCAAAGCACATCAAG ATTGTAACAAAAGATGGCTTTTTTCAAATTGCAGAAAATAGAAAGTTTAAAAGTTTAATG GAACTTGTGGAGTACTACAAGCACCATTCTCTTAAAGAAGGTTTCAGAACCTTGGATACA ACTCTGCAGTTTCCATACAAGGAGCCAGAACATTCAGCTGGACAGAGGGCTAACAGAGCG GGCAATCGCTTGCTGAGTCCAAAGGTGCTGGGCATCGCCGTCGCTCGCTATGACTTCTGC GCCAGGGACATGCGGGAACTGTCCTTGTTGAAAGGAGACATGGTGAAGATTTACACGAAG ATGAGCGCCAACGGCTGGTGGCGAGGAGAAGTGAACGGCAGGGTGGGCTGGTTTCCATCC ACGTATGTGGAAGAGGATGAATAATCTCCCCTCCAGCGTTGCACCCCACACCAGGAATTT CAGAGACGGGATCCACAGAAGGCTGTGCAGCGTTATGAATTCACTCAAGTGTTTAAAAAG CTGTCTTTCTGGCTATTCAACATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 2-111, gnl|bosTau2|chr3 (29488121-29488229) | |
| 2-111, gnl|canFam2|chr6 (46947798-46947232) | |
| 2-111, gnl|dasNov1|scaffold_33 (105506-106074) | |
| 2-111, gnl|echTel1|scaffold_314063 (5487-6068) | |
| 2-111, gnl|hg17|chr1 (107942887-107943456) | |
| 2-111, gnl|Hg17|chr1 (107943153-107943045) | |
| 2-111, gnl|loxAfr1|scaffold_34125 (15113-15684) | |
| 2-111, gnl|mm7|chr3 (109392571-109392015) | |
| 2-111, gnl|Mm7|chr3 (109392307-109392419) | |
| 2-111, gnl|monDom2|scaffold_0 (9091588-9091015) | |
| 2-111, gnl|oryCun1|scaffold_205776 (59108-59668) | |
| 2-111, gnl|panTro1|chr1 (107048232-107048801) | |
| 2-111, gnl|rheMac2|chr1 (110590223-110590795) | |
| 2-111, gnl|rn3|chr2 (205186890-205186330) | |
| 155-295, gnl|bosTau2|chr3 (29545074-29545214) | |
| 155-295, gnl|canFam2|chr6 (46995649-46995400) | |
| 155-295, gnl|dasNov1|scaffold_69575 (9288-9038) | |
| 155-295, gnl|echTel1|scaffold_263801 (829-580) | |
| 155-295, gnl|hg17|chr1 (107897276-107897527) | |
| 155-295, gnl|Hg17|chr1 (107897422-107897282) | |
| 155-295, gnl|loxAfr1|scaffold_57101 (8946-9202) | |
| 155-295, gnl|mm7|chr3 (109446458-109446204) | |
| 155-295, gnl|Mm7|chr3 (109446316-109446456) | |
| 155-295, gnl|monDom2|scaffold_0 (9158457-9158206) | |
| 155-295, gnl|oryCun1|scaffold_205776 (1591-1840) | |
| 155-295, gnl|panTro1|chr1 (107004529-107004780) | |
| 155-295, gnl|rheMac2|chr1 (110548926-110549177) | |
| 155-295, gnl|rn3|chr2 (205233910-205233654) | |
| 395-515, gnl|bosTau2|chr3 (29598205-29598325) | |
| 395-515, gnl|canFam2|chr6 (47034095-47033960) | |
| 395-515, gnl|danRer3|chr24 (27766472-27766605) | |
| 395-515, gnl|dasNov1|scaffold_33 (16546-16681) | |
| 395-515, gnl|echTel1|scaffold_324709 (125168-125033) | |
| 395-515, gnl|fr1|chrUn (47653791-47653930) | |
| 395-515, gnl|galGal2|chr8 (978684-978819) | |
| 395-515, gnl|hg17|chr1 (107857696-107857831) | |
| 395-515, gnl|Hg17|chr1 (107857828-107857708) | |
| 395-515, gnl|loxAfr1|scaffold_2786 (19859-19994) | |
| 395-515, gnl|mm7|chr3 (109475663-109475528) | |
| 395-515, gnl|Mm7|chr3 (109475529-109475649) | |
| 395-515, gnl|monDom2|scaffold_0 (9192492-9192357) | |
| 395-515, gnl|oryCun1|scaffold_202021 (115201-115336) | |
| 395-515, gnl|panTro1|chr1 (106965526-106965661) | |
| 395-515, gnl|rheMac2|chr1 (110511852-110511987) | |
| 395-515, gnl|rn3|chr2 (205261518-205261384) | |
| 395-515, gnl|tetNig1|chrUn_random (52727750-52727875) | |
| 395-515, gnl|xenTro1|scaffold_527 (257528-257664) | |
| 596-724, gnl|bosTau2|chr3 (29606399-29606527) | |
| 596-724, gnl|Hg17|chr1 (107851009-107850882) | |
| 596-724, gnl|Mm7|chr3 (109482587-109482715) | |
| 736-888, gnl|bosTau2|chr3 (29628103-29628255) | |
| 736-888, gnl|canFam2|chr6 (47060770-47060587) | |
| 736-888, gnl|danRer3|chr24 (27748167-27748343) | |
| 736-888, gnl|dasNov1|scaffold_678 (158587-158770) | |
| 736-888, gnl|echTel1|scaffold_324709 (159008-158827) | |
| 736-888, gnl|fr1|chrUn (47648638-47648815) | |
| 736-888, gnl|galGal2|chr8 (965565-965748) | |
| 736-888, gnl|hg17|chr1 (107828697-107828880) | |
| 736-888, gnl|Hg17|chr1 (107828857-107828705) | |
| 736-888, gnl|loxAfr1|scaffold_10233 (17278-17097) | |
| 736-888, gnl|mm7|chr3 (109501261-109501078) | |
| 736-888, gnl|Mm7|chr3 (109501099-109501252) | |
| 736-888, gnl|monDom2|scaffold_0 (9220874-9220701) | |
| 736-888, gnl|oryCun1|scaffold_202021 (79961-80141) | |
| 736-888, gnl|panTro1|chr1 (106935495-106935678) | |
| 736-888, gnl|rheMac2|chr1 (110483439-110483641) | |
| 736-888, gnl|rn3|chr2 (205286534-205286351) | |
| 736-888, gnl|tetNig1|chrUn_random (52722813-52722980) | |
| 736-888, gnl|xenTro1|scaffold_527 (245472-245633) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-111, gnl|bosTau2|chr3 (29488121-29488229) | |
| 2-111, gnl|canFam2|chr6 (46947798-46947232) | |
| 2-111, gnl|dasNov1|scaffold_33 (105506-106074) | |
| 2-111, gnl|echTel1|scaffold_314063 (5487-6068) | |
| 2-111, gnl|hg17|chr1 (107942887-107943456) | |
| 2-111, gnl|Hg17|chr1 (107943153-107943045) | |
| 2-111, gnl|loxAfr1|scaffold_34125 (15113-15684) | |
| 2-111, gnl|mm7|chr3 (109392571-109392015) | |
| 2-111, gnl|Mm7|chr3 (109392307-109392419) | |
| 2-111, gnl|monDom2|scaffold_0 (9091588-9091015) | |
| 2-111, gnl|oryCun1|scaffold_205776 (59108-59668) | |
| 2-111, gnl|panTro1|chr1 (107048232-107048801) | |
| 2-111, gnl|rheMac2|chr1 (110590223-110590795) | |
| 2-111, gnl|rn3|chr2 (205186890-205186330) | |
| 155-295, gnl|bosTau2|chr3 (29545074-29545214) | |
| 155-295, gnl|canFam2|chr6 (46995649-46995400) | |
| 155-295, gnl|dasNov1|scaffold_69575 (9288-9038) | |
| 155-295, gnl|echTel1|scaffold_263801 (829-580) | |
| 155-295, gnl|hg17|chr1 (107897276-107897527) | |
| 155-295, gnl|Hg17|chr1 (107897422-107897282) | |
| 155-295, gnl|loxAfr1|scaffold_57101 (8946-9202) | |
| 155-295, gnl|mm7|chr3 (109446458-109446204) | |
| 155-295, gnl|Mm7|chr3 (109446316-109446456) | |
| 155-295, gnl|monDom2|scaffold_0 (9158457-9158206) | |
| 155-295, gnl|oryCun1|scaffold_205776 (1591-1840) | |
| 155-295, gnl|panTro1|chr1 (107004529-107004780) | |
| 155-295, gnl|rheMac2|chr1 (110548926-110549177) | |
| 155-295, gnl|rn3|chr2 (205233910-205233654) | |
| 395-515, gnl|bosTau2|chr3 (29598205-29598325) | |
| 395-515, gnl|canFam2|chr6 (47034095-47033960) | |
| 395-515, gnl|danRer3|chr24 (27766472-27766605) | |
| 395-515, gnl|dasNov1|scaffold_33 (16546-16681) | |
| 395-515, gnl|echTel1|scaffold_324709 (125168-125033) | |
| 395-515, gnl|fr1|chrUn (47653791-47653930) | |
| 395-515, gnl|galGal2|chr8 (978684-978819) | |
| 395-515, gnl|hg17|chr1 (107857696-107857831) | |
| 395-515, gnl|Hg17|chr1 (107857828-107857708) | |
| 395-515, gnl|loxAfr1|scaffold_2786 (19859-19994) | |
| 395-515, gnl|mm7|chr3 (109475663-109475528) | |
| 395-515, gnl|Mm7|chr3 (109475529-109475649) | |
| 395-515, gnl|monDom2|scaffold_0 (9192492-9192357) | |
| 395-515, gnl|oryCun1|scaffold_202021 (115201-115336) | |
| 395-515, gnl|panTro1|chr1 (106965526-106965661) | |
| 395-515, gnl|rheMac2|chr1 (110511852-110511987) | |
| 395-515, gnl|rn3|chr2 (205261518-205261384) | |
| 395-515, gnl|tetNig1|chrUn_random (52727750-52727875) | |
| 395-515, gnl|xenTro1|scaffold_527 (257528-257664) | |
| 596-724, gnl|bosTau2|chr3 (29606399-29606527) | |
| 596-724, gnl|Hg17|chr1 (107851009-107850882) | |
| 596-724, gnl|Mm7|chr3 (109482587-109482715) | |
| 736-888, gnl|bosTau2|chr3 (29628103-29628255) | |
| 736-888, gnl|canFam2|chr6 (47060770-47060587) | |
| 736-888, gnl|danRer3|chr24 (27748167-27748343) | |
| 736-888, gnl|dasNov1|scaffold_678 (158587-158770) | |
| 736-888, gnl|echTel1|scaffold_324709 (159008-158827) | |
| 736-888, gnl|fr1|chrUn (47648638-47648815) | |
| 736-888, gnl|galGal2|chr8 (965565-965748) | |
| 736-888, gnl|hg17|chr1 (107828697-107828880) | |
| 736-888, gnl|Hg17|chr1 (107828857-107828705) | |
| 736-888, gnl|loxAfr1|scaffold_10233 (17278-17097) | |
| 736-888, gnl|mm7|chr3 (109501261-109501078) | |
| 736-888, gnl|Mm7|chr3 (109501099-109501252) | |
| 736-888, gnl|monDom2|scaffold_0 (9220874-9220701) | |
| 736-888, gnl|oryCun1|scaffold_202021 (79961-80141) | |
| 736-888, gnl|panTro1|chr1 (106935495-106935678) | |
| 736-888, gnl|rheMac2|chr1 (110483439-110483641) | |
| 736-888, gnl|rn3|chr2 (205286534-205286351) | |
| 736-888, gnl|tetNig1|chrUn_random (52722813-52722980) | |
| 736-888, gnl|xenTro1|scaffold_527 (245472-245633) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cbl (0.114797) |