Non-Coding RNA Search

Ss1.1-Tra1-TCH01H080004.5

Sequence:


               
               CTGAATTTCATGCTGGAAGTGCCTTAATTACCCCGACCACACCATCAGGGTGTCGCAGAG
TGGAGCAGTGAATTTGCTACCAGGAAAGTATTTGTAGGAGCAGAAGCTAAAGACGCTTGG
CCAAGAGGCTTTATTCTTTGTACAAATTAAGGGAATCCTGGGGGGCAGAGCATCTGGAGG
AAGCCCAGTGCTCGTTTCCTCCTGTCTTCAACCTTTCCTGGGCGGGAGCATCATGCGATC
CCGTTGCCTTATTCAGTGCATTTCAGAACTGCTCCCAAGTGTCATCTCAGCTCTTTTATA
ACCTTCTCTCCCCGCCCCCGTGGTACGCAAACCATAGGGCTGTTCATTGTAGCATGTTAA
GATTTTGTTTTTAATCTGGCTTCAAACACAGCACAAGTAAGTTGAATAGCACAAGACAGG
TTACTGGACAAAAAAAGAAATCTCTCCGCGTCAGGGTAGATTTTGCATTTGCATGTGTGT
ACATATATAGGCATATATTTATGTATGAACAATAACAGAGGTGGTGATATACAGCCTTCG
CCCAGCAAGGGCGTCCGCATTAGCAATAACCAGTGTCCATTTTGGAAAGAGCACCCATGG
CCCCAAACCTGGCTTCCTAGCCATTCCCGTGGGGGAGCCCCGCCCCCTCCTCCCCCGCAT
CTGCGTTTCGTCGCCTCCTGCAGTTAACCAAGCACTTTAGAAGCCAGGAGAGGTGCGTTC
ACAGTACCGTCTGTTACCAAATGGCAAAATTGGAAAGAAACTGTAAATAGCATTACAGAA
GGAGTGTAATATATTTGTTCAGCTGTAAGATGGTTATTTCACAGAAGCCTTATAACCTCG
CTTCATGTAAGAAAACGATTACCAAAAACAGCATTTTCATATGCAGCGACTGTAGTGTGT
TTCCAGACTAGTTACTGTTAATACGTAGGTTAGTGTAAGCTTTCTGCTGCATTCCGTACA
CTTAACAGCTTATTAGATGATTGCCAGCAGTGACCCGTTGTCTCACGTAACCAAAAAGCA
TGGTGTGACGAACACGGTTAACCTAGTAACTGTGCCTTAGGAACTCACGCCCCCTCATGG
AGCACGGGGGAATCGCACCCTCCGGCGAGGTGACAAGCAGTTCCCCTCACTCGAGAGCTC
TCCCACAGAAAGAATCACTTAAATGTCCTTCTGTCCAATCATGTCTTACTTTGTAAGTCA
CAGAGGCGAACATCTGAAAGCCATATTGAACCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAATTTCATGCTGGAAGTGCCTTAATTACCCCGACCACACCATCAGGGTGTCGCAGAG
TGGAGCAGTGAATTTGCTACCAGGAAAGTATTTGTAGGAGCAGAAGCTAAAGACGCTTGG
CCAAGAGGCTTTATTCTTTGTACAAATTAAGGGAATCCTGGGGGGCAGAGCATCTGGAGG
AAGCCCAGTGCTCGTTTCCTCCTGTCTTCAACCTTTCCTGGGCGGGAGCATCATGCGATC
CCGTTGCCTTATTCAGTGCATTTCAGAACTGCTCCCAAGTGTCATCTCAGCTCTTTTATA
ACCTTCTCTCCCCGCCCCCGTGGTACGCAAACCATAGGGCTGTTCATTGTAGCATGTTAA
GATTTTGTTTTTAATCTGGCTTCAAACACAGCACAAGTAAGTTGAATAGCACAAGACAGG
TTACTGGACAAAAAAAGAAATCTCTCCGCGTCAGGGTAGATTTTGCATTTGCATGTGTGT
ACATATATAGGCATATATTTATGTATGAACAATAACAGAGGTGGTGATATACAGCCTTCG
CCCAGCAAGGGCGTCCGCATTAGCAATAACCAGTGTCCATTTTGGAAAGAGCACCCATGG
CCCCAAACCTGGCTTCCTAGCCATTCCCGTGGGGGAGCCCCGCCCCCTCCTCCCCCGCAT
CTGCGTTTCGTCGCCTCCTGCAGTTAACCAAGCACTTTAGAAGCCAGGAGAGGTGCGTTC
ACAGTACCGTCTGTTACCAAATGGCAAAATTGGAAAGAAACTGTAAATAGCATTACAGAA
GGAGTGTAATATATTTGTTCAGCTGTAAGATGGTTATTTCACAGAAGCCTTATAACCTCG
CTTCATGTAAGAAAACGATTACCAAAAACAGCATTTTCATATGCAGCGACTGTAGTGTGT
TTCCAGACTAGTTACTGTTAATACGTAGGTTAGTGTAAGCTTTCTGCTGCATTCCGTACA
CTTAACAGCTTATTAGATGATTGCCAGCAGTGACCCGTTGTCTCACGTAACCAAAAAGCA
TGGTGTGACGAACACGGTTAACCTAGTAACTGTGCCTTAGGAACTCACGCCCCCTCATGG
AGCACGGGGGAATCGCACCCTCCGGCGAGGTGACAAGCAGTTCCCCTCACTCGAGAGCTC
TCCCACAGAAAGAATCACTTAAATGTCCTTCTGTCCAATCATGTCTTACTTTGTAAGTCA
CAGAGGCGAACATCTGAAAGCCATATTGAACCATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1236, gnl|bosTau2|chr24 (1040882-1042128)
               

               
               1-1236, gnl|Hg17|chr18 (75388897-75390127)
               

               
               1-1236, gnl|Mm7|chr18 (80893996-80892777)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr24 (1040882-1042128)
               

               
               1-1236, gnl|Hg17|chr18 (75388897-75390127)
               

               
               1-1236, gnl|Mm7|chr18 (80893996-80892777)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               cly (0.120642)

	1-1236, gnl\|bosTau2\|chr24 (1040882-1042128)
	1-1236, gnl\|Hg17\|chr18 (75388897-75390127)
	1-1236, gnl\|Mm7\|chr18 (80893996-80892777)