Ss1.1-Tra1-TCH01H080025.5
|
ACGTGGTCCGCAGCAGGATGATGGCGGGCGCTGCAGAGGAGTCTCTAACGCTTTTCCGGG
CTGGCATCCGCGCAGCGTTGGAGGCTTGGCCCGCCTTGCAGATCGCTGTGGAGAACGGCT
TTGGAGGTGTGCATAGCCAGGAGAAGGCTGAGTGGCTAGGGGGTGCAGTGGAGGAGTATT
TCTTCCGCAATGCTGACTTGGAGCTAGAGGAGGTGGAGGACTTCCTCGGGGAGCTCATGA
CGAATGAGTTTGATACGGTTGTGGAAGATGGGAGTCTGCCCCAGGTGAGCCAGCAGCTAC
AGACCATGTTCCGCCACCTCCAGAGGGGTGATAGGGCTGCTCTGAAGGAAATGGCCTCTT
TCATCACACAAAGAAAGTGCAAAGTTAGAGCCACTGCACTAACTACAGCCAGAGAGACTG
ATGAAGATGAGGATGATGCAAACAGCGTGGAGGAGATGGAGGTTGCAGCTATGAATGATG
GGGCAGTTACAGATGGGGTCTGCCCCCAGCCACCAGACTCCCAGACTATTAAGGAAGAGG
ATATAGTAGAGGATGGCTGGACTATTGTCCGGAGAAAGAAATGAGTGGGGCCAGAAATGG
TTTGGGTCCTTATTTGCTAGTTGTTTTGGGACTTGTGTGTAGGGGGGTGTTTTGGAGGGT
TATGGACCTCTGGACTGGTTTCCTCATCTCCACCCTCTCCCCATTCCCCTGTACAGCTTC
TTCCAGGGGGAGAAGAGCCCTAGGGTCCTTGGTCTTGGGCTGGTGGGATCTGGTTCACCA
GGGCCTGGAGTTACTGTCTGAGTGATGAGGGATGCTTTCCCAGCAAAGTGCCTCTTGGGT
GCAGTCAGGGTGAAGAAGAAGGGATGAGAGGTGTGGGACTGACTGGAGAAGCTAAATGCT
GGTTCATGGCAGGCAAGTGGATTGTAAAGGGAGAGGACCAGGGAGAACCAATATTCCTGC
TGGGTCAGGATGTGAATGAAAGTAGCTGTGGTACCTCTCCCTCTTCTCATCCCCCAGTCC
TACAGGGCACCTCTGTACCACTGCCCAGAAATTGGAACCTCCCAGGAACACTCCCTTCCT
GCAGCCCAGTGTCCAGCCCTGAGTTCCTTCAGGATGACCTTGACAAGGCAACGAGCTTGG
GGGACCCAGGCTTTGTTTTCTGTCTCTTCCAACCTCTTTCTGAACTCCTTATCCCATCTA
AGTCCCGGGATGAGGCCTAAGACCTCAATGAATAATACCTTACTGTTTAATTTGTGGCTT
GACTTGTGAGTAGCCTTGGAATCAGCTTTCTGAGAGCTGAGCTTTAGAGCTCAGCAAGGG
AGCAGTTTCTGGGCCCACTCTAGCAGCCTGGTACTTTGGACAAACAGACGAATGGAGCAC
AGCAGTGTTCTGAAAGTTTCTGTAAGCTTGAAATAAACTGTATTTTTCTTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACGTGGTCCGCAGCAGGATGATGGCGGGCGCTGCAGAGGAGTCTCTAACGCTTTTCCGGG
CTGGCATCCGCGCAGCGTTGGAGGCTTGGCCCGCCTTGCAGATCGCTGTGGAGAACGGCT
TTGGAGGTGTGCATAGCCAGGAGAAGGCTGAGTGGCTAGGGGGTGCAGTGGAGGAGTATT
TCTTCCGCAATGCTGACTTGGAGCTAGAGGAGGTGGAGGACTTCCTCGGGGAGCTCATGA
CGAATGAGTTTGATACGGTTGTGGAAGATGGGAGTCTGCCCCAGGTGAGCCAGCAGCTAC
AGACCATGTTCCGCCACCTCCAGAGGGGTGATAGGGCTGCTCTGAAGGAAATGGCCTCTT
TCATCACACAAAGAAAGTGCAAAGTTAGAGCCACTGCACTAACTACAGCCAGAGAGACTG
ATGAAGATGAGGATGATGCAAACAGCGTGGAGGAGATGGAGGTTGCAGCTATGAATGATG
GGGCAGTTACAGATGGGGTCTGCCCCCAGCCACCAGACTCCCAGACTATTAAGGAAGAGG
ATATAGTAGAGGATGGCTGGACTATTGTCCGGAGAAAGAAATGAGTGGGGCCAGAAATGG
TTTGGGTCCTTATTTGCTAGTTGTTTTGGGACTTGTGTGTAGGGGGGTGTTTTGGAGGGT
TATGGACCTCTGGACTGGTTTCCTCATCTCCACCCTCTCCCCATTCCCCTGTACAGCTTC
TTCCAGGGGGAGAAGAGCCCTAGGGTCCTTGGTCTTGGGCTGGTGGGATCTGGTTCACCA
GGGCCTGGAGTTACTGTCTGAGTGATGAGGGATGCTTTCCCAGCAAAGTGCCTCTTGGGT
GCAGTCAGGGTGAAGAAGAAGGGATGAGAGGTGTGGGACTGACTGGAGAAGCTAAATGCT
GGTTCATGGCAGGCAAGTGGATTGTAAAGGGAGAGGACCAGGGAGAACCAATATTCCTGC
TGGGTCAGGATGTGAATGAAAGTAGCTGTGGTACCTCTCCCTCTTCTCATCCCCCAGTCC
TACAGGGCACCTCTGTACCACTGCCCAGAAATTGGAACCTCCCAGGAACACTCCCTTCCT
GCAGCCCAGTGTCCAGCCCTGAGTTCCTTCAGGATGACCTTGACAAGGCAACGAGCTTGG
GGGACCCAGGCTTTGTTTTCTGTCTCTTCCAACCTCTTTCTGAACTCCTTATCCCATCTA
AGTCCCGGGATGAGGCCTAAGACCTCAATGAATAATACCTTACTGTTTAATTTGTGGCTT
GACTTGTGAGTAGCCTTGGAATCAGCTTTCTGAGAGCTGAGCTTTAGAGCTCAGCAAGGG
AGCAGTTTCTGGGCCCACTCTAGCAGCCTGGTACTTTGGACAAACAGACGAATGGAGCAC
AGCAGTGTTCTGAAAGTTTCTGTAAGCTTGAAATAAACTGTATTTTTCTTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
50-736, gnl|bosTau2|chrX (8939704-8939029) |
|
50-736, gnl|Hg17|chrX (54349906-54354151) |
| |
|
796-987, gnl|bosTau2|chrX (26573693-26573497) |
|
796-987, gnl|canFam2|chrX (46163717-46163917) |
|
796-987, gnl|echTel1|scaffold_285081 (65753-65585) |
|
796-987, gnl|hg17|chrX (54354164-54354363) |
|
796-987, gnl|Hg17|chrX (54354214-54354434) |
|
796-987, gnl|loxAfr1|scaffold_40209 (16178-16373) |
|
796-987, gnl|mm7|chrX (145848814-145848641) |
|
796-987, gnl|Mm7|chrX (145848762-145848578) |
|
796-987, gnl|monDom2|scaffold_255 (257733-257931) |
|
796-987, gnl|oryCun1|scaffold_121459 (1346-1538) |
|
796-987, gnl|rheMac2|chrX (52764401-52764600) |
|
796-987, gnl|rn3|chrX (40461297-40461113) |
| |
|
1055-1442, gnl|bosTau2|chrX (26573406-26573022) |
|
1055-1442, gnl|Hg17|chrX (54354533-54354953) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
50-736, gnl|bosTau2|chrX (8939704-8939029) |
|
50-736, gnl|Hg17|chrX (54349906-54354151) |
| |
|
796-987, gnl|bosTau2|chrX (26573693-26573497) |
|
796-987, gnl|canFam2|chrX (46163717-46163917) |
|
796-987, gnl|echTel1|scaffold_285081 (65753-65585) |
|
796-987, gnl|hg17|chrX (54354164-54354363) |
|
796-987, gnl|Hg17|chrX (54354214-54354434) |
|
796-987, gnl|loxAfr1|scaffold_40209 (16178-16373) |
|
796-987, gnl|mm7|chrX (145848814-145848641) |
|
796-987, gnl|Mm7|chrX (145848762-145848578) |
|
796-987, gnl|monDom2|scaffold_255 (257733-257931) |
|
796-987, gnl|oryCun1|scaffold_121459 (1346-1538) |
|
796-987, gnl|rheMac2|chrX (52764401-52764600) |
|
796-987, gnl|rn3|chrX (40461297-40461113) |
| |
|
1055-1442, gnl|bosTau2|chrX (26573406-26573022) |
|
1055-1442, gnl|Hg17|chrX (54354533-54354953) |
|
che (0.272628) |
|
clu (0.239292) |
|
med (0.232504) |
|
ecc (0.23007) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
pty (0.142714) |
|
cov (0.132153) |
|
eru (0.120048) |
|
jej (0.0989218) |
|
che (0.272628) |
|
clu (0.239292) |
|
med (0.232504) |
|
ecc (0.23007) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
pty (0.142714) |
|
cov (0.132153) |
|
eru (0.120048) |
|
jej (0.0989218) |
