Ss1.1-Tra1-TCH01H080036.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGTCGGGGCAGCAGGACAGAGCCGAGGACGCGCGCGGAGCCTCCCAGGGTCCTGCTCTT GGGACAGCAGCCATGACGGAGAACTCGGACAAAGTGCCCATCGCCCTGGTGGGGCCCGAC GACGTTGAGTTTTGCAGCCCCCCGGCATACGCCACGGTGACAGTGAAGCCCTCCAGCCCC GCGAGGCTGCTCAAGGTCGGAGCCCTAGTCCTCATTTCGGGCGCAGTGCTGCTGCTCTTC GGAGCCATCGGGGCCTTTTATTTTTGGAAGGGGGGCGACAATCACATTTACAATGTCCAT TATACCATGAGCATCAATGGGAAATTACAAGATGGGTCAATGGAAATAGATGCTGGCAAC AACGTGGAGACCTTTAAAATGGGAAACGGAGCCGAAGAGGCGATTGAAGTTAATGATTTC CAGAATGGCATCACAGGAATCCGCTTTGCTGGAGGAGAGAAGTGCTACATCAAAGCCCAG GTGAAGGCTCGTGTTCCTGAGGTGGGCGCCGAGACCAAGCAAAGCATCTCCTCCAAACTG GAAGGCAAGATCATGCCAGTTAGATATGAAGAAAATTCTCTCATCTGGGTGGCAGTAGAC CAGCCTGTGAAGGACAGCAGCTTCTTGAGCTCTAAAGTCTTAGAACTCTGTGGCGACCTT CCCATTTTCTGGCTTAAACCAACCGACCCGAAAGAAATCCAGAGAGAAAGAAGAGAACTG GTAAGAAAAATTGTCACCACGACGACCACAAGAAGACTACGCAGTGGACCACGGGACCAG CCAGGTCCTGGAAGACCGAGTAATGAAACCAGACCCAGTCTTCAAGAGGATTCAGAACCC TTCAATCCAGACAACCCTTACCACCAGCAGGAAGGGGAAGGCATGACGTTCGACCCTCGA CTGGATCATGAGGGCATCTGCTGTATAGAGTGCAGGCGGAGCTACACCCACTGCCAGAAG ATCTGTGAGCCCCTGGGGGGCTATAATCCGTGGCCTTACAACTACCAAGGCTGCCGGTCA GCCTGCAGAGTCGTCATGCCGTGTAGCTGGTGGGTGGCCCGCATCTTGGGCATGGTGTGA TGTCACTTCACCTACCAGGTACCATAAAGTAAGAATTCACTCCAGAGGCAACCAAAGTTT GAGGCATTGTGATGCTGAAGGGACCACAAGGTGTTTCATGGTCCACCCGAGCGATGTTAT TTGAGACACTTAACAGAATATTGTCAACCGCTTTACAGAACTTTACTCAGAATTGCACGT GTACTGAAAGGGTAGTTTTAAGTCTAAAAAATACCATTATCCTTTTATTACTTGCTATTT TTTATTTGCTTTTCTTTGCCAGTAAGGCCTACCTATAAGAAAGACTTCCTTACCAAGCTT TTCTGGGATTATCATGAAATATTTACTTACAATTTGTCAAAGACCTCACCTGGACATTTG AGTTCCTTTTAAATCAAGTTACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGTCGGGGCAGCAGGACAGAGCCGAGGACGCGCGCGGAGCCTCCCAGGGTCCTGCTCTT GGGACAGCAGCCATGACGGAGAACTCGGACAAAGTGCCCATCGCCCTGGTGGGGCCCGAC GACGTTGAGTTTTGCAGCCCCCCGGCATACGCCACGGTGACAGTGAAGCCCTCCAGCCCC GCGAGGCTGCTCAAGGTCGGAGCCCTAGTCCTCATTTCGGGCGCAGTGCTGCTGCTCTTC GGAGCCATCGGGGCCTTTTATTTTTGGAAGGGGGGCGACAATCACATTTACAATGTCCAT TATACCATGAGCATCAATGGGAAATTACAAGATGGGTCAATGGAAATAGATGCTGGCAAC AACGTGGAGACCTTTAAAATGGGAAACGGAGCCGAAGAGGCGATTGAAGTTAATGATTTC CAGAATGGCATCACAGGAATCCGCTTTGCTGGAGGAGAGAAGTGCTACATCAAAGCCCAG GTGAAGGCTCGTGTTCCTGAGGTGGGCGCCGAGACCAAGCAAAGCATCTCCTCCAAACTG GAAGGCAAGATCATGCCAGTTAGATATGAAGAAAATTCTCTCATCTGGGTGGCAGTAGAC CAGCCTGTGAAGGACAGCAGCTTCTTGAGCTCTAAAGTCTTAGAACTCTGTGGCGACCTT CCCATTTTCTGGCTTAAACCAACCGACCCGAAAGAAATCCAGAGAGAAAGAAGAGAACTG GTAAGAAAAATTGTCACCACGACGACCACAAGAAGACTACGCAGTGGACCACGGGACCAG CCAGGTCCTGGAAGACCGAGTAATGAAACCAGACCCAGTCTTCAAGAGGATTCAGAACCC TTCAATCCAGACAACCCTTACCACCAGCAGGAAGGGGAAGGCATGACGTTCGACCCTCGA CTGGATCATGAGGGCATCTGCTGTATAGAGTGCAGGCGGAGCTACACCCACTGCCAGAAG ATCTGTGAGCCCCTGGGGGGCTATAATCCGTGGCCTTACAACTACCAAGGCTGCCGGTCA GCCTGCAGAGTCGTCATGCCGTGTAGCTGGTGGGTGGCCCGCATCTTGGGCATGGTGTGA TGTCACTTCACCTACCAGGTACCATAAAGTAAGAATTCACTCCAGAGGCAACCAAAGTTT GAGGCATTGTGATGCTGAAGGGACCACAAGGTGTTTCATGGTCCACCCGAGCGATGTTAT TTGAGACACTTAACAGAATATTGTCAACCGCTTTACAGAACTTTACTCAGAATTGCACGT GTACTGAAAGGGTAGTTTTAAGTCTAAAAAATACCATTATCCTTTTATTACTTGCTATTT TTTATTTGCTTTTCTTTGCCAGTAAGGCCTACCTATAAGAAAGACTTCCTTACCAAGCTT TTCTGGGATTATCATGAAATATTTACTTACAATTTGTCAAAGACCTCACCTGGACATTTG AGTTCCTTTTAAATCAAGTTACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 537-694, - strand, RNAz p=0.934072 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 537-694, - strand, RNAz p=0.934072 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-145, gnl|bosTau2|chr12 (3563107-3562963) | |
| 1-145, gnl|dasNov1|scaffold_181575 (1284-1701) | |
| 1-145, gnl|hg17|chr13 (52211402-52211874) | |
| 1-145, gnl|Hg17|chr13 (52211909-52211765) | |
| 1-145, gnl|mm7|chr14 (74342298-74342737) | |
| 1-145, gnl|monDom2|scaffold_64 (2479487-2479007) | |
| 1-145, gnl|panTro1|chr14_random (19108671-19109143) | |
| 1-145, gnl|rheMac2|chr17 (31626251-31626720) | |
| 1-145, gnl|rn3|chr15 (60932210-60932646) | |
| 283-427, gnl|bosTau2|chr12 (2913968-2913824) | |
| 283-427, gnl|canFam2|chr22 (12712058-12712226) | |
| 283-427, gnl|dasNov1|scaffold_2553 (67193-67025) | |
| 283-427, gnl|echTel1|scaffold_314111 (36995-36827) | |
| 283-427, gnl|fr1|chrUn (241550424-241550270) | |
| 283-427, gnl|galGal2|chr1 (157884966-157884803) | |
| 283-427, gnl|hg17|chr13 (52205344-52205512) | |
| 283-427, gnl|Hg17|chr13 (52205498-52205354) | |
| 283-427, gnl|loxAfr1|scaffold_6421 (12717-12885) | |
| 283-427, gnl|mm7|chr14 (74337267-74337433) | |
| 283-427, gnl|Mm7|chr14 (74337421-74337277) | |
| 283-427, gnl|monDom2|scaffold_64 (2484660-2484492) | |
| 283-427, gnl|oryCun1|scaffold_213580 (4589-4421) | |
| 283-427, gnl|panTro1|chr14_random (19102569-19102737) | |
| 283-427, gnl|rheMac2|chr17 (31619822-31619990) | |
| 283-427, gnl|rn3|chr15 (60926572-60926740) | |
| 283-427, gnl|tetNig1|chr15 (2456338-2456190) | |
| 283-427, gnl|xenTro1|scaffold_381 (152575-152417) | |
| 537-694, gnl|bosTau2|chr12 (2735055-2735212) | |
| 537-694, gnl|canFam2|chr22 (12700531-12700724) | |
| 537-694, gnl|danRer3|chr9 (3571101-3571254) | |
| 537-694, gnl|dasNov1|scaffold_2553 (77354-77161) | |
| 537-694, gnl|echTel1|scaffold_320324 (36655-36848) | |
| 537-694, gnl|fr1|chrUn (241552540-241552383) | |
| 537-694, gnl|galGal2|chr1 (157888546-157888361) | |
| 537-694, gnl|hg17|chr13 (52184832-52185024) | |
| 537-694, gnl|Hg17|chr13 (52185009-52184852) | |
| 537-694, gnl|loxAfr1|scaffold_206281 (821-1014) | |
| 537-694, gnl|mm7|chr14 (74326039-74326221) | |
| 537-694, gnl|Mm7|chr14 (74326209-74326052) | |
| 537-694, gnl|monDom2|scaffold_64 (2489240-2489044) | |
| 537-694, gnl|oryCun1|scaffold_62449 (613-416) | |
| 537-694, gnl|panTro1|chr14_random (19081850-19082042) | |
| 537-694, gnl|rn3|chr15 (60914882-60915067) | |
| 537-694, gnl|tetNig1|chr15 (2458521-2458365) | |
| 537-694, gnl|xenTro1|scaffold_381 (164732-164552) | |
| 862-1462, gnl|bosTau2|chr12 (2746165-2746758) | |
| 862-1462, gnl|Hg17|chr13 (52175949-52175362) | |
| 862-1462, gnl|Mm7|chr14 (74318869-74318328) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-145, gnl|bosTau2|chr12 (3563107-3562963) | |
| 1-145, gnl|dasNov1|scaffold_181575 (1284-1701) | |
| 1-145, gnl|hg17|chr13 (52211402-52211874) | |
| 1-145, gnl|Hg17|chr13 (52211909-52211765) | |
| 1-145, gnl|mm7|chr14 (74342298-74342737) | |
| 1-145, gnl|monDom2|scaffold_64 (2479487-2479007) | |
| 1-145, gnl|panTro1|chr14_random (19108671-19109143) | |
| 1-145, gnl|rheMac2|chr17 (31626251-31626720) | |
| 1-145, gnl|rn3|chr15 (60932210-60932646) | |
| 283-427, gnl|bosTau2|chr12 (2913968-2913824) | |
| 283-427, gnl|canFam2|chr22 (12712058-12712226) | |
| 283-427, gnl|dasNov1|scaffold_2553 (67193-67025) | |
| 283-427, gnl|echTel1|scaffold_314111 (36995-36827) | |
| 283-427, gnl|fr1|chrUn (241550424-241550270) | |
| 283-427, gnl|galGal2|chr1 (157884966-157884803) | |
| 283-427, gnl|hg17|chr13 (52205344-52205512) | |
| 283-427, gnl|Hg17|chr13 (52205498-52205354) | |
| 283-427, gnl|loxAfr1|scaffold_6421 (12717-12885) | |
| 283-427, gnl|mm7|chr14 (74337267-74337433) | |
| 283-427, gnl|Mm7|chr14 (74337421-74337277) | |
| 283-427, gnl|monDom2|scaffold_64 (2484660-2484492) | |
| 283-427, gnl|oryCun1|scaffold_213580 (4589-4421) | |
| 283-427, gnl|panTro1|chr14_random (19102569-19102737) | |
| 283-427, gnl|rheMac2|chr17 (31619822-31619990) | |
| 283-427, gnl|rn3|chr15 (60926572-60926740) | |
| 283-427, gnl|tetNig1|chr15 (2456338-2456190) | |
| 283-427, gnl|xenTro1|scaffold_381 (152575-152417) | |
| 537-694, gnl|bosTau2|chr12 (2735055-2735212) | |
| 537-694, gnl|canFam2|chr22 (12700531-12700724) | |
| 537-694, gnl|danRer3|chr9 (3571101-3571254) | |
| 537-694, gnl|dasNov1|scaffold_2553 (77354-77161) | |
| 537-694, gnl|echTel1|scaffold_320324 (36655-36848) | |
| 537-694, gnl|fr1|chrUn (241552540-241552383) | |
| 537-694, gnl|galGal2|chr1 (157888546-157888361) | |
| 537-694, gnl|hg17|chr13 (52184832-52185024) | |
| 537-694, gnl|Hg17|chr13 (52185009-52184852) | |
| 537-694, gnl|loxAfr1|scaffold_206281 (821-1014) | |
| 537-694, gnl|mm7|chr14 (74326039-74326221) | |
| 537-694, gnl|Mm7|chr14 (74326209-74326052) | |
| 537-694, gnl|monDom2|scaffold_64 (2489240-2489044) | |
| 537-694, gnl|oryCun1|scaffold_62449 (613-416) | |
| 537-694, gnl|panTro1|chr14_random (19081850-19082042) | |
| 537-694, gnl|rn3|chr15 (60914882-60915067) | |
| 537-694, gnl|tetNig1|chr15 (2458521-2458365) | |
| 537-694, gnl|xenTro1|scaffold_381 (164732-164552) | |
| 862-1462, gnl|bosTau2|chr12 (2746165-2746758) | |
| 862-1462, gnl|Hg17|chr13 (52175949-52175362) | |
| 862-1462, gnl|Mm7|chr14 (74318869-74318328) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nca (2.05311) | |
| nmm (0.398406) | |
| ebs (0.354904) | |
| fce (0.271592) | |
| fbs (0.175346) | |
| tra (0.123092) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (2.05311) | |
| nmm (0.398406) | |
| ebs (0.354904) | |
| fce (0.271592) | |
| fbs (0.175346) | |
| tra (0.123092) |