Non-Coding RNA Search

Ss1.1-Tra1-TCH01H080076.5

Sequence:


               
               GCACTACAAGGGGCAGCAGATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCAT
CTACATTGAACGAGTGCAGCGGGAGAAGGCTAATGGCACAACTGTCCATGTGGGCATTCA
CCCCAGCAAGGTGGGTGTTCTTGAGGTTTTGGCGGATGCTTGACGGGAGGAGGCAAGCAC
AGCAGTTATTGGCAAATTGCTTGTTTGCAGAGCAATCCCATCTGAAGAGATTTTAGGTGT
GCTGCAAAGCAGTCATAAAGCCAATACTGTATTTGAATTGAGTGTTCTAAATTTTTATGA
AGTCAGGCTGTCTTTAACATTCTGTATGTATATTTATGTACTTTTTCCTTAAAAGCTATT
AGTAAACTGATTCATCAATCTAACAATGGATAGGTCTTAAAATCTAGGAAATACAGTAAT
TTTTAGATGACATAGAGCTGGTACCCTGTGTATTAAACAGAATTGAGTAAAAGGTAAGGC
AAGCTTTACAGCCCTGGCGAGTAAGTAAGAAGCCATTTGCAGATGGGGAAAGTCTAGGGC
TTAGAGGCTAGAGCCTACTGCTAGTGATATCAGTCAAGTGAAAATAGAAGGTATGGCCTC
ATCCTCATGTCTTGGTCCTTAATGTGAATTCTCCAATATTGCTTTCTCTAATTTCTCTCA
ATTCAAAGACAATTATGTTTGAGATAAAGGTAATAAATGCACTTGTGCCTGTTCAAATAC
CGAGGTGTTTGTCTCTTCAGATCTTATGTTGGCACCATGAATCTAAGCTTCAAACTACAG
AAAAGTCAAAACACTCGCTAGTACAGAAAAACAGCTGCTGCCTATCTAGCGCCTAGAATT
CAGCAAACATTCCTTCCCCCTCTTCCCTACCCTCGGTGTATCACAAGCATCCCAAAACTT
CACCTCTGTCTACTACAATATGTATCTCCTGAGAGTGAGAACTTACCCATTCTTTGCTCG
AATCATATTTTTTGCCCCCACCACTAGATGAGCTGTTGCCAAGGTCACCAACAGTGACAG
TCAGTGACTGACTCCTAGAGTTTTTAGAACTTAAGGCAGCGTTTGACACAGTTGGCAGCT
GGTCCTCCTCTTGGCTCAGTGAGTCATCTTCATCTCCATTATTCCAAAGAGACTTCAATA
TCCCGTTGACTATTTTGCGTTTCAACTTGGCTAGCTAATGGATACCTCAAACCTAACAAG
TTTAAACTGGTTTTGTCCTTGAACCCTCAACATTTGCTACTGCATCACCCTCTGGCAGTG
CTATCCTCCTGATGGCTCAGGCCACAGTGTCATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTACAAGGGGCAGCAGATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCAT
CTACATTGAACGAGTGCAGCGGGAGAAGGCTAATGGCACAACTGTCCATGTGGGCATTCA
CCCCAGCAAGGTGGGTGTTCTTGAGGTTTTGGCGGATGCTTGACGGGAGGAGGCAAGCAC
AGCAGTTATTGGCAAATTGCTTGTTTGCAGAGCAATCCCATCTGAAGAGATTTTAGGTGT
GCTGCAAAGCAGTCATAAAGCCAATACTGTATTTGAATTGAGTGTTCTAAATTTTTATGA
AGTCAGGCTGTCTTTAACATTCTGTATGTATATTTATGTACTTTTTCCTTAAAAGCTATT
AGTAAACTGATTCATCAATCTAACAATGGATAGGTCTTAAAATCTAGGAAATACAGTAAT
TTTTAGATGACATAGAGCTGGTACCCTGTGTATTAAACAGAATTGAGTAAAAGGTAAGGC
AAGCTTTACAGCCCTGGCGAGTAAGTAAGAAGCCATTTGCAGATGGGGAAAGTCTAGGGC
TTAGAGGCTAGAGCCTACTGCTAGTGATATCAGTCAAGTGAAAATAGAAGGTATGGCCTC
ATCCTCATGTCTTGGTCCTTAATGTGAATTCTCCAATATTGCTTTCTCTAATTTCTCTCA
ATTCAAAGACAATTATGTTTGAGATAAAGGTAATAAATGCACTTGTGCCTGTTCAAATAC
CGAGGTGTTTGTCTCTTCAGATCTTATGTTGGCACCATGAATCTAAGCTTCAAACTACAG
AAAAGTCAAAACACTCGCTAGTACAGAAAAACAGCTGCTGCCTATCTAGCGCCTAGAATT
CAGCAAACATTCCTTCCCCCTCTTCCCTACCCTCGGTGTATCACAAGCATCCCAAAACTT
CACCTCTGTCTACTACAATATGTATCTCCTGAGAGTGAGAACTTACCCATTCTTTGCTCG
AATCATATTTTTTGCCCCCACCACTAGATGAGCTGTTGCCAAGGTCACCAACAGTGACAG
TCAGTGACTGACTCCTAGAGTTTTTAGAACTTAAGGCAGCGTTTGACACAGTTGGCAGCT
GGTCCTCCTCTTGGCTCAGTGAGTCATCTTCATCTCCATTATTCCAAAGAGACTTCAATA
TCCCGTTGACTATTTTGCGTTTCAACTTGGCTAGCTAATGGATACCTCAAACCTAACAAG
TTTAAACTGGTTTTGTCCTTGAACCCTCAACATTTGCTACTGCATCACCCTCTGGCAGTG
CTATCCTCCTGATGGCTCAGGCCACAGTGTCATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55624296|ref|XP_517754.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55624296|ref|XP_517754.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               919-1037, - strand, RNAz p=0.60334

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               919-1037, - strand, RNAz p=0.60334

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-134, gnl|bosTau2|chr11 (30063077-30062944)
               

               
               1-134, gnl|canFam2|chr20 (8341304-8341169)
               

               
               1-134, gnl|danRer3|chrNA (27973825-27973690)
               

               
               1-134, gnl|dasNov1|scaffold_137884 (942-1077)
               

               
               1-134, gnl|echTel1|scaffold_77814 (2167-2032)
               

               
               1-134, gnl|fr1|chrUn (141373951-141373816)
               

               
               1-134, gnl|galGal2|chr2 (29791703-29791572)
               

               
               1-134, gnl|hg17|chr1 (170052541-170052676)
               

               
               1-134, gnl|Hg17|chr5 (55836477-55836344)
               

               
               1-134, gnl|loxAfr1|scaffold_64516 (5807-5672)
               

               
               1-134, gnl|mm7|chr5 (3242609-3242744)
               

               
               1-134, gnl|Mm7|chr5 (3242616-3242749)
               

               
               1-134, gnl|monDom2|scaffold_5 (109366700-109366835)
               

               
               1-134, gnl|oryCun1|scaffold_208682 (70336-70201)
               

               
               1-134, gnl|panTro1|chr1 (152414029-152414164)
               

               
               1-134, gnl|rheMac2|chr19 (41138478-41138343)
               

               
               1-134, gnl|rn3|chr11 (51785751-51785616)
               

               
               1-134, gnl|tetNig1|chr1 (2883552-2883417)
               

               
               1-134, gnl|xenTro1|scaffold_21 (498108-498243)
               


               
               686-1208, gnl|bosTau2|chr2 (77726188-77725716)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr11 (30063077-30062944)
               

               
               1-134, gnl|canFam2|chr20 (8341304-8341169)
               

               
               1-134, gnl|danRer3|chrNA (27973825-27973690)
               

               
               1-134, gnl|dasNov1|scaffold_137884 (942-1077)
               

               
               1-134, gnl|echTel1|scaffold_77814 (2167-2032)
               

               
               1-134, gnl|fr1|chrUn (141373951-141373816)
               

               
               1-134, gnl|galGal2|chr2 (29791703-29791572)
               

               
               1-134, gnl|hg17|chr1 (170052541-170052676)
               

               
               1-134, gnl|Hg17|chr5 (55836477-55836344)
               

               
               1-134, gnl|loxAfr1|scaffold_64516 (5807-5672)
               

               
               1-134, gnl|mm7|chr5 (3242609-3242744)
               

               
               1-134, gnl|Mm7|chr5 (3242616-3242749)
               

               
               1-134, gnl|monDom2|scaffold_5 (109366700-109366835)
               

               
               1-134, gnl|oryCun1|scaffold_208682 (70336-70201)
               

               
               1-134, gnl|panTro1|chr1 (152414029-152414164)
               

               
               1-134, gnl|rheMac2|chr19 (41138478-41138343)
               

               
               1-134, gnl|rn3|chr11 (51785751-51785616)
               

               
               1-134, gnl|tetNig1|chr1 (2883552-2883417)
               

               
               1-134, gnl|xenTro1|scaffold_21 (498108-498243)
               


               
               686-1208, gnl|bosTau2|chr2 (77726188-77725716)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-134, gnl\|bosTau2\|chr11 (30063077-30062944)
	1-134, gnl\|canFam2\|chr20 (8341304-8341169)
	1-134, gnl\|danRer3\|chrNA (27973825-27973690)
	1-134, gnl\|dasNov1\|scaffold_137884 (942-1077)
	1-134, gnl\|echTel1\|scaffold_77814 (2167-2032)
	1-134, gnl\|fr1\|chrUn (141373951-141373816)
	1-134, gnl\|galGal2\|chr2 (29791703-29791572)
	1-134, gnl\|hg17\|chr1 (170052541-170052676)
	1-134, gnl\|Hg17\|chr5 (55836477-55836344)
	1-134, gnl\|loxAfr1\|scaffold_64516 (5807-5672)
	1-134, gnl\|mm7\|chr5 (3242609-3242744)
	1-134, gnl\|Mm7\|chr5 (3242616-3242749)
	1-134, gnl\|monDom2\|scaffold_5 (109366700-109366835)
	1-134, gnl\|oryCun1\|scaffold_208682 (70336-70201)
	1-134, gnl\|panTro1\|chr1 (152414029-152414164)
	1-134, gnl\|rheMac2\|chr19 (41138478-41138343)
	1-134, gnl\|rn3\|chr11 (51785751-51785616)
	1-134, gnl\|tetNig1\|chr1 (2883552-2883417)
	1-134, gnl\|xenTro1\|scaffold_21 (498108-498243)

	686-1208, gnl\|bosTau2\|chr2 (77726188-77725716)