Non-Coding RNA Search

Ss1.1-Tra1-TCH01H080087.5

Sequence:


               
               CAGCCTGGGCGCCCAGGGGCGGCGGCGGCCCATCCCCAGCGCTCTGCGCGCTGGCGACCT
CAGTGCACCGGCCACCGCAGTGCGGAGCCGCTCCGCAAGCGCGACTGTCGCGGCGCCAGC
GTGATCGGGCCCCACGCACCCACCCTGCGCACCTGCCGCGGGTCCAAAAAGGATCCTGCA
AAAATGAGCCATTCTCACCCCGCTGGGTAAGTGACAACTGGAGCTTTTCCACGCCACAGC
AGGTGGCGGCTGCAGCCAGCGGCCCCTCCGCCGCCCCCCCTCCTGCTGCGGAGAGAAGGG
GCGAGAGCGGGAGAGAGGGGGCTGGGGAGAGGAGGAAAATAATACGGATTCTGGGTCGCA
GCGAGGATGGCAGAAATTCCAGGCTTCGTATCTCCTCCCTCCCCTTCCTCGCTCCTTTCA
CTGATGTTCGCCCCCTTTGAAATTTTCACTCTGGAAGGATTAAAAAATGGATGTGAAAAA
CGCACACATTAAGCAGGGATGTTAGCGGGGATCAACAGGATCCTCTGTTGCGGAAGATAC
GTGTTTAAATGCAAAAGTGGAGGTCACCAAAATAGGCATTCTTTTGGAGAAAGGGGGCTC
AGAAATAAATTCTCGCTGTGGCGTCTTCCATACAAATGAGATGCGAGGTGATTTAATATC
AAGGCAGGTTTCATTGTGAGGGGTGCCCCTTATGTCAGGATTTTAAACTGCCCTGTCTCA
AAAGGATCATAGTGGATATTTAGAAGTACTGTGACCAGGGGAGGTGATAGGATGCAGGAA
AGCAAGAAGGAAGAAGGAAGATGTGTGCTTGTGTGTTTACACATAACCTTCCCGTTGCTT
TGGGCAGGGTGACTCCTCAGAAGACCTATTTTGGCAATTATTCAATCTATTTTAGAAAGT
TAACACAGTCATTATTGACTGTTGGAAAAAAATAAATAAAACCCAACGTCTTGGCCCTTT
TATTGGAAGAGAGAATATCCAATTTCCTTCTGAATTAAACAATGCAATGCGTATTAGATG
GTTTTTTATGTTGATACATCTTGTAACCAGATAATATCCTAGTTGATCTTGCAACTAATT
TGAAGATGCTTTCCTTTTTAATTGAATTTATTGCACATTTTCAAGAGCAGCAAATTAGCA
GAGGACAACATATTTAAGATCATTTGGAGTTCGTGATGTCTGAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGGGCGCCCAGGGGCGGCGGCGGCCCATCCCCAGCGCTCTGCGCGCTGGCGACCT
CAGTGCACCGGCCACCGCAGTGCGGAGCCGCTCCGCAAGCGCGACTGTCGCGGCGCCAGC
GTGATCGGGCCCCACGCACCCACCCTGCGCACCTGCCGCGGGTCCAAAAAGGATCCTGCA
AAAATGAGCCATTCTCACCCCGCTGGGTAAGTGACAACTGGAGCTTTTCCACGCCACAGC
AGGTGGCGGCTGCAGCCAGCGGCCCCTCCGCCGCCCCCCCTCCTGCTGCGGAGAGAAGGG
GCGAGAGCGGGAGAGAGGGGGCTGGGGAGAGGAGGAAAATAATACGGATTCTGGGTCGCA
GCGAGGATGGCAGAAATTCCAGGCTTCGTATCTCCTCCCTCCCCTTCCTCGCTCCTTTCA
CTGATGTTCGCCCCCTTTGAAATTTTCACTCTGGAAGGATTAAAAAATGGATGTGAAAAA
CGCACACATTAAGCAGGGATGTTAGCGGGGATCAACAGGATCCTCTGTTGCGGAAGATAC
GTGTTTAAATGCAAAAGTGGAGGTCACCAAAATAGGCATTCTTTTGGAGAAAGGGGGCTC
AGAAATAAATTCTCGCTGTGGCGTCTTCCATACAAATGAGATGCGAGGTGATTTAATATC
AAGGCAGGTTTCATTGTGAGGGGTGCCCCTTATGTCAGGATTTTAAACTGCCCTGTCTCA
AAAGGATCATAGTGGATATTTAGAAGTACTGTGACCAGGGGAGGTGATAGGATGCAGGAA
AGCAAGAAGGAAGAAGGAAGATGTGTGCTTGTGTGTTTACACATAACCTTCCCGTTGCTT
TGGGCAGGGTGACTCCTCAGAAGACCTATTTTGGCAATTATTCAATCTATTTTAGAAAGT
TAACACAGTCATTATTGACTGTTGGAAAAAAATAAATAAAACCCAACGTCTTGGCCCTTT
TATTGGAAGAGAGAATATCCAATTTCCTTCTGAATTAAACAATGCAATGCGTATTAGATG
GTTTTTTATGTTGATACATCTTGTAACCAGATAATATCCTAGTTGATCTTGCAACTAATT
TGAAGATGCTTTCCTTTTTAATTGAATTTATTGCACATTTTCAAGAGCAGCAAATTAGCA
GAGGACAACATATTTAAGATCATTTGGAGTTCGTGATGTCTGAAATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               144-419, + strand, RNAz p=0.999174

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-419, + strand, RNAz p=0.999174

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               257-420, + strand, RNAmicro p=0.998931
               

               
               261-439, - strand, RNAmicro p=0.989688

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               257-420, + strand, RNAmicro p=0.998931
               

               
               261-439, - strand, RNAmicro p=0.989688

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-1188, gnl|bosTau2|chr3 (49639632-49638506)
               

               
               65-1188, gnl|Hg17|chr1 (74851345-74850247)
               

               
               65-1188, gnl|Mm7|chr3 (154572658-154573654)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-1188, gnl|bosTau2|chr3 (49639632-49638506)
               

               
               65-1188, gnl|Hg17|chr1 (74851345-74850247)
               

               
               65-1188, gnl|Mm7|chr3 (154572658-154573654)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	257-420, + strand, RNAmicro p=0.998931
	261-439, - strand, RNAmicro p=0.989688

	65-1188, gnl\|bosTau2\|chr3 (49639632-49638506)
	65-1188, gnl\|Hg17\|chr1 (74851345-74850247)
	65-1188, gnl\|Mm7\|chr3 (154572658-154573654)