Ss1.1-Tra1-TCH01H080090.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAAGTGGCTGCGCTGCGCGGGGCCCAGAGCCGGTTCGGCGCGTCGACTGCCCAGAGTC CGCGGCCGTGGTGCCCCGAGGAGCCGAGCAGCCATGGCCTATCACAGCTTCCTGGTGGAG CCCATCAGCTGCCACGCCTGGAACAAGGACCGCACCCAGATTGCCATCTGCCCCAACAAC CACGAGGTGCACATCTACGAGAAGAGTGGGAACAAGTGGGTCCAGGTGCACGAGCTCAAG GAGCACAATGGGCAGGTGACAGGCATTGACTGGGCCCCTGAGAGTAACCGCATCGTGACT TGCGGCACAGACCGCAACGCCTACGTGTGGACGCTGAAGGGCCGCACGTGGAAGCCTACC CTTGTCATCCTGCGCATCAACCGTGCTGCTCGCTGTGTGCGCTGGGCCCCCCAGGAGAAC AAGTTCGCTGTGGGCAGTGGCTCCCGTGTCATCTCCATCTGCTATTTTGAGCAGGAAAAT GACTGGTGGGTGTGCAAGCACATCAAGAAGCCCATTCGCTCCACCGTCCTCAGCCTGGAC TGGCACCCCAACAACGTGCTCCTGGCCGCCGGCTCCTGCGACTTCAAGTGCCGGATCTTC TCAGCCTACATCAAGGAGGTGGAGGAGCGGCCAGCACCCACCCCCTGGGGCTCCAAGATG CCCTTCGGGGAGCTGATGTTTGAGTCCAGCAGTAGCTGCGGCTGGGTGCACGGCGTCTGC TTTTCAGCCAGTGGTAGCCGCGTGGCCTGGGTCAGTCATGACAGCACCGTGTGCCTGGCT GATGCCGACAAGAAGATGGCCGTGGCGACTCTGGCCTCTGAAACGCTACCACTGCTGGCT CTGACCTTCATCACGGAAAACAGTCTGGTGGCAGCGGGCCACGACTGCTTCCCGGTGCTG TTTACCTACGACGGCGCCGCGGGGACGCTGAGCTTCGGGGGGCGGCTGGACGTGCCCAAG CAAAGCTCGCAGCGCGGCCTGACGGCCCGCGAGCGCTTCCAGAACCTGGACAAGAAGGCG AGCTCGGAGGGCAGCGCGGCGGCGGGCGCGGGCCTGGACTCGCTGCATAAGAACAGCGTC AGCCAGATCTCTGTGCTCAGTGGAGGGAAGGCCAAGTGCTCGCAGTTCTGCACGACGGGC ATGGACGGTGGCATGAGCATCTGGGACGTGAAGAGCCTGGAGTCAGCCTTGAAGGACCTC AAGATCAAATGACCCGTGAGGCGTCTGCGCCCTCATCCCAGCTGCTGGGGGAAGAGGGTC GGGAAGGCTAAGGATCGCTGTGCTGAATGTTTCTAGGGTACCAGTCCGGGTCCCCACAGA TGCTGCTCCCTGGGGGTGGGGGGTGGGAGAGGCTTTTCTTACCTATTGAAGGAACAGTTG CCTTTTTCTTAAGGAAATGCTTTCATTTATTGTAAAAAAAAAAAAAAAAGTCCCCCAAGC ACTCTGCTGGTCACGAACTGCTTCAAACAAGGTGGTAATAAAAATGCAGCTGTAGAGACA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAAGTGGCTGCGCTGCGCGGGGCCCAGAGCCGGTTCGGCGCGTCGACTGCCCAGAGTC CGCGGCCGTGGTGCCCCGAGGAGCCGAGCAGCCATGGCCTATCACAGCTTCCTGGTGGAG CCCATCAGCTGCCACGCCTGGAACAAGGACCGCACCCAGATTGCCATCTGCCCCAACAAC CACGAGGTGCACATCTACGAGAAGAGTGGGAACAAGTGGGTCCAGGTGCACGAGCTCAAG GAGCACAATGGGCAGGTGACAGGCATTGACTGGGCCCCTGAGAGTAACCGCATCGTGACT TGCGGCACAGACCGCAACGCCTACGTGTGGACGCTGAAGGGCCGCACGTGGAAGCCTACC CTTGTCATCCTGCGCATCAACCGTGCTGCTCGCTGTGTGCGCTGGGCCCCCCAGGAGAAC AAGTTCGCTGTGGGCAGTGGCTCCCGTGTCATCTCCATCTGCTATTTTGAGCAGGAAAAT GACTGGTGGGTGTGCAAGCACATCAAGAAGCCCATTCGCTCCACCGTCCTCAGCCTGGAC TGGCACCCCAACAACGTGCTCCTGGCCGCCGGCTCCTGCGACTTCAAGTGCCGGATCTTC TCAGCCTACATCAAGGAGGTGGAGGAGCGGCCAGCACCCACCCCCTGGGGCTCCAAGATG CCCTTCGGGGAGCTGATGTTTGAGTCCAGCAGTAGCTGCGGCTGGGTGCACGGCGTCTGC TTTTCAGCCAGTGGTAGCCGCGTGGCCTGGGTCAGTCATGACAGCACCGTGTGCCTGGCT GATGCCGACAAGAAGATGGCCGTGGCGACTCTGGCCTCTGAAACGCTACCACTGCTGGCT CTGACCTTCATCACGGAAAACAGTCTGGTGGCAGCGGGCCACGACTGCTTCCCGGTGCTG TTTACCTACGACGGCGCCGCGGGGACGCTGAGCTTCGGGGGGCGGCTGGACGTGCCCAAG CAAAGCTCGCAGCGCGGCCTGACGGCCCGCGAGCGCTTCCAGAACCTGGACAAGAAGGCG AGCTCGGAGGGCAGCGCGGCGGCGGGCGCGGGCCTGGACTCGCTGCATAAGAACAGCGTC AGCCAGATCTCTGTGCTCAGTGGAGGGAAGGCCAAGTGCTCGCAGTTCTGCACGACGGGC ATGGACGGTGGCATGAGCATCTGGGACGTGAAGAGCCTGGAGTCAGCCTTGAAGGACCTC AAGATCAAATGACCCGTGAGGCGTCTGCGCCCTCATCCCAGCTGCTGGGGGAAGAGGGTC GGGAAGGCTAAGGATCGCTGTGCTGAATGTTTCTAGGGTACCAGTCCGGGTCCCCACAGA TGCTGCTCCCTGGGGGTGGGGGGTGGGAGAGGCTTTTCTTACCTATTGAAGGAACAGTTG CCTTTTTCTTAAGGAAATGCTTTCATTTATTGTAAAAAAAAAAAAAAAAGTCCCCCAAGC ACTCTGCTGGTCACGAACTGCTTCAAACAAGGTGGTAATAAAAATGCAGCTGTAGAGACA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 629-1356, + strand, RNAz p=0.940382 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 629-1356, + strand, RNAz p=0.940382 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 259-492, gnl|bosTau2|chr25 (34908687-34908920) | |
| 259-492, gnl|canFam2|chr6 (13207914-13207671) | |
| 259-492, gnl|danRer3|chr3 (37088794-37088552) | |
| 259-492, gnl|dasNov1|scaffold_36145 (3927-3693) | |
| 259-492, gnl|echTel1|scaffold_293702 (33302-33070) | |
| 259-492, gnl|fr1|chrUn (88236929-88237172) | |
| 259-492, gnl|galGal2|chr14 (6479648-6479880) | |
| 259-492, gnl|hg17|chr7 (98630310-98630553) | |
| 259-492, gnl|Hg17|chr7 (98630309-98630542) | |
| 259-492, gnl|loxAfr1|scaffold_10865 (39468-39227) | |
| 259-492, gnl|mm7|chr5 (144152206-144152445) | |
| 259-492, gnl|Mm7|chr5 (144152205-144152438) | |
| 259-492, gnl|monDom2|scaffold_17 (6726935-6727164) | |
| 259-492, gnl|oryCun1|scaffold_178102 (172253-172041) | |
| 259-492, gnl|panTro1|chr6 (100336936-100337179) | |
| 259-492, gnl|rheMac2|chr3 (46598370-46598613) | |
| 259-492, gnl|rn3|chr12 (9831394-9831151) | |
| 259-492, gnl|tetNig1|chrUn_random (159106269-159106504) | |
| 259-492, gnl|xenTro1|scaffold_289 (1211933-1212159) | |
| 590-800, gnl|bosTau2|chr25 (34910778-34910988) | |
| 590-800, gnl|Hg17|chr7 (98633163-98633373) | |
| 590-800, gnl|Mm7|chr5 (144154214-144154424) | |
| 876-1082, gnl|bosTau2|chr25 (34912058-34912264) | |
| 876-1082, gnl|canFam2|chr6 (13204865-13204659) | |
| 876-1082, gnl|danRer3|chr3 (37085688-37085483) | |
| 876-1082, gnl|dasNov1|scaffold_181137 (1519-1313) | |
| 876-1082, gnl|echTel1|scaffold_293702 (30437-30222) | |
| 876-1082, gnl|fr1|chrUn (88237998-88238206) | |
| 876-1082, gnl|galGal2|chr14 (6481161-6481361) | |
| 876-1082, gnl|hg17|chr7 (98634945-98635160) | |
| 876-1082, gnl|Hg17|chr7 (98634944-98635150) | |
| 876-1082, gnl|loxAfr1|scaffold_10865 (35764-35548) | |
| 876-1082, gnl|mm7|chr5 (144155367-144155573) | |
| 876-1082, gnl|Mm7|chr5 (144155366-144155572) | |
| 876-1082, gnl|monDom2|scaffold_17 (6736049-6736243) | |
| 876-1082, gnl|oryCun1|scaffold_178102 (171602-171425) | |
| 876-1082, gnl|panTro1|chr6 (100341608-100341823) | |
| 876-1082, gnl|rheMac2|chr3 (46603187-46603402) | |
| 876-1082, gnl|rn3|chr12 (9827624-9827418) | |
| 876-1082, gnl|tetNig1|chrUn_random (159107357-159107561) | |
| 876-1082, gnl|xenTro1|scaffold_289 (1221988-1222194) | |
| 1172-1499, gnl|bosTau2|chr25 (34913376-34913685) | |
| 1172-1499, gnl|Hg17|chr7 (98636723-98637089) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 259-492, gnl|bosTau2|chr25 (34908687-34908920) | |
| 259-492, gnl|canFam2|chr6 (13207914-13207671) | |
| 259-492, gnl|danRer3|chr3 (37088794-37088552) | |
| 259-492, gnl|dasNov1|scaffold_36145 (3927-3693) | |
| 259-492, gnl|echTel1|scaffold_293702 (33302-33070) | |
| 259-492, gnl|fr1|chrUn (88236929-88237172) | |
| 259-492, gnl|galGal2|chr14 (6479648-6479880) | |
| 259-492, gnl|hg17|chr7 (98630310-98630553) | |
| 259-492, gnl|Hg17|chr7 (98630309-98630542) | |
| 259-492, gnl|loxAfr1|scaffold_10865 (39468-39227) | |
| 259-492, gnl|mm7|chr5 (144152206-144152445) | |
| 259-492, gnl|Mm7|chr5 (144152205-144152438) | |
| 259-492, gnl|monDom2|scaffold_17 (6726935-6727164) | |
| 259-492, gnl|oryCun1|scaffold_178102 (172253-172041) | |
| 259-492, gnl|panTro1|chr6 (100336936-100337179) | |
| 259-492, gnl|rheMac2|chr3 (46598370-46598613) | |
| 259-492, gnl|rn3|chr12 (9831394-9831151) | |
| 259-492, gnl|tetNig1|chrUn_random (159106269-159106504) | |
| 259-492, gnl|xenTro1|scaffold_289 (1211933-1212159) | |
| 590-800, gnl|bosTau2|chr25 (34910778-34910988) | |
| 590-800, gnl|Hg17|chr7 (98633163-98633373) | |
| 590-800, gnl|Mm7|chr5 (144154214-144154424) | |
| 876-1082, gnl|bosTau2|chr25 (34912058-34912264) | |
| 876-1082, gnl|canFam2|chr6 (13204865-13204659) | |
| 876-1082, gnl|danRer3|chr3 (37085688-37085483) | |
| 876-1082, gnl|dasNov1|scaffold_181137 (1519-1313) | |
| 876-1082, gnl|echTel1|scaffold_293702 (30437-30222) | |
| 876-1082, gnl|fr1|chrUn (88237998-88238206) | |
| 876-1082, gnl|galGal2|chr14 (6481161-6481361) | |
| 876-1082, gnl|hg17|chr7 (98634945-98635160) | |
| 876-1082, gnl|Hg17|chr7 (98634944-98635150) | |
| 876-1082, gnl|loxAfr1|scaffold_10865 (35764-35548) | |
| 876-1082, gnl|mm7|chr5 (144155367-144155573) | |
| 876-1082, gnl|Mm7|chr5 (144155366-144155572) | |
| 876-1082, gnl|monDom2|scaffold_17 (6736049-6736243) | |
| 876-1082, gnl|oryCun1|scaffold_178102 (171602-171425) | |
| 876-1082, gnl|panTro1|chr6 (100341608-100341823) | |
| 876-1082, gnl|rheMac2|chr3 (46603187-46603402) | |
| 876-1082, gnl|rn3|chr12 (9827624-9827418) | |
| 876-1082, gnl|tetNig1|chrUn_random (159107357-159107561) | |
| 876-1082, gnl|xenTro1|scaffold_289 (1221988-1222194) | |
| 1172-1499, gnl|bosTau2|chr25 (34913376-34913685) | |
| 1172-1499, gnl|Hg17|chr7 (98636723-98637089) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| csp (1.61186) | |
| cly (1.56834) | |
| ill (0.877963) | |
| cga (0.837287) | |
| cje (0.826173) | |
| lnt (0.569233) | |
| che (0.545256) | |
| ton (0.526501) | |
| amn (0.417711) | |
| col (0.390016) | |
| eep (0.367692) | |
| med (0.348756) | |
| cut (0.339847) | |
| cki (0.330469) | |
| nco (0.323468) | |
| cag (0.302389) | |
| jej (0.296765) | |
| csk (0.281492) | |
| cst (0.280073) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| bla (0.248694) | |
| clu (0.239292) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (1.61186) | |
| cly (1.56834) | |
| ill (0.877963) | |
| cga (0.837287) | |
| cje (0.826173) | |
| lnt (0.569233) | |
| che (0.545256) | |
| ton (0.526501) | |
| amn (0.417711) | |
| col (0.390016) | |
| eep (0.367692) | |
| med (0.348756) | |
| cut (0.339847) | |
| cki (0.330469) | |
| nco (0.323468) | |
| cag (0.302389) | |
| jej (0.296765) | |
| csk (0.281492) | |
| cst (0.280073) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| bla (0.248694) | |
| clu (0.239292) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |