Non-Coding RNA Search

Ss1.1-Tra1-TCH01H090097.5

Sequence:


               
               GCTCGGGTCTGGCGGCGGCAGCATGGCGGCGGGGGCGGCCGAGGCGGCGGCGGCTGTGGT
GGAGGTCGGCTCCGCCGGGCAGTTTGAGGAGCTGCTGCGCCTAAGAGCCAAGTCCCTGCT
GGTGGTCCATTTCTGGGCACCATGGGCCCCACAGTGTGCTCAGATGAACGATGTGATGGC
CGAGTTAGCCAAGGAGCACCCGCAAGTTTCCTTTGTGAAGTTGGAGGCTGAAGCTGTTCC
TGAAGTGTCTGAAAAATACGGAATTAGTTCTGTACCCACCTTTCTGTTTTTCAAGAATTC
TCAGAGCATTGACCGGTTAGATGGTGCACATGCCCCAGAGTTGACCAAAAAGGTTCAGCG
ACATGCGTCCAGCAGCTCTTTCCCATCTGGCGGTAGCGAGCACCTGAAAGAAGACCTCAG
CCTTCGCCTGAAGAAGCTGACCCACGCTGCCCCCTGCATGCTGTTCATGAAGGGAACACC
CCAGGAGCCGCGCTGCGGTTTCAGCAAGCAGATGGTGGAAATTCTTAACAAACATAATAT
CCAGTTTAGCAGTTTTGATATCTTCTCAGATGAAGAAGTTCGCCAAGGCCTCAAAACCTA
TTCCAATTGGCCCACCTACCCCCAGCTCTATGTTTCTGGAGAGCTCATAGGAGGACTTGA
TATAATCAAGGAGCTAGAAGCATCTAAAGAACTAGATACAATTTGCCCCAAAGCTCCCAA
ATTAGAGGAAAGGCTCAAAGTACTGACAAATAAAGCTTCTGTGATGCTCTTTATGAAGGG
AAACAAACAGGAAGCCAAGTGTGGTTTCAGCAGACAAATCCTGGAAATTCTAAATAGTAC
TGGTGTCGACTACGAGACGTTCGACATACTGGAGGATGAGGAAGTCCGGCAGGGGTTGAA
AACCTACTCCAACTGGCCGACGTACCCTCAGCTGTATGTGAAAGGGGAGCTGGTCGGAGG
CCTGGATATTGTTAAGGAACTAAAAGAAAACGGTGAGCTGCTGCCTATCCTGAAAGGAGA
AAACTAATCAGTGGGGGACTTGGTGCCCAGCTACTGCAGGAGGCCGTCACTCCGCTGAGT
GACCAGTCCCTGAGGTGGCCGAGGAGTAGGAGATGCTTATCCCCGGTTACGCTGGTGTAT
TTCTCGAGGCTGCGCTAAGTGAGCGGATGCGACGTGTTTTCCACCCAAATGAGAACACAA
TAAACATCTTCAAGTTCAATTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGGGTCTGGCGGCGGCAGCATGGCGGCGGGGGCGGCCGAGGCGGCGGCGGCTGTGGT
GGAGGTCGGCTCCGCCGGGCAGTTTGAGGAGCTGCTGCGCCTAAGAGCCAAGTCCCTGCT
GGTGGTCCATTTCTGGGCACCATGGGCCCCACAGTGTGCTCAGATGAACGATGTGATGGC
CGAGTTAGCCAAGGAGCACCCGCAAGTTTCCTTTGTGAAGTTGGAGGCTGAAGCTGTTCC
TGAAGTGTCTGAAAAATACGGAATTAGTTCTGTACCCACCTTTCTGTTTTTCAAGAATTC
TCAGAGCATTGACCGGTTAGATGGTGCACATGCCCCAGAGTTGACCAAAAAGGTTCAGCG
ACATGCGTCCAGCAGCTCTTTCCCATCTGGCGGTAGCGAGCACCTGAAAGAAGACCTCAG
CCTTCGCCTGAAGAAGCTGACCCACGCTGCCCCCTGCATGCTGTTCATGAAGGGAACACC
CCAGGAGCCGCGCTGCGGTTTCAGCAAGCAGATGGTGGAAATTCTTAACAAACATAATAT
CCAGTTTAGCAGTTTTGATATCTTCTCAGATGAAGAAGTTCGCCAAGGCCTCAAAACCTA
TTCCAATTGGCCCACCTACCCCCAGCTCTATGTTTCTGGAGAGCTCATAGGAGGACTTGA
TATAATCAAGGAGCTAGAAGCATCTAAAGAACTAGATACAATTTGCCCCAAAGCTCCCAA
ATTAGAGGAAAGGCTCAAAGTACTGACAAATAAAGCTTCTGTGATGCTCTTTATGAAGGG
AAACAAACAGGAAGCCAAGTGTGGTTTCAGCAGACAAATCCTGGAAATTCTAAATAGTAC
TGGTGTCGACTACGAGACGTTCGACATACTGGAGGATGAGGAAGTCCGGCAGGGGTTGAA
AACCTACTCCAACTGGCCGACGTACCCTCAGCTGTATGTGAAAGGGGAGCTGGTCGGAGG
CCTGGATATTGTTAAGGAACTAAAAGAAAACGGTGAGCTGCTGCCTATCCTGAAAGGAGA
AAACTAATCAGTGGGGGACTTGGTGCCCAGCTACTGCAGGAGGCCGTCACTCCGCTGAGT
GACCAGTCCCTGAGGTGGCCGAGGAGTAGGAGATGCTTATCCCCGGTTACGCTGGTGTAT
TTCTCGAGGCTGCGCTAAGTGAGCGGATGCGACGTGTTTTCCACCCAAATGAGAACACAA
TAAACATCTTCAAGTTCAATTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q58DA7_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58DA7_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               662-781, - strand, RNAz p=0.545372

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               662-781, - strand, RNAz p=0.545372

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-1224, gnl|bosTau2|chr17 (18904556-18903343)
               

               
               17-1224, gnl|Hg17|chr6 (3923276-3924539)
               

               
               17-1224, gnl|Mm7|chr4 (91199167-91197951)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1224, gnl|bosTau2|chr17 (18904556-18903343)
               

               
               17-1224, gnl|Hg17|chr6 (3923276-3924539)
               

               
               17-1224, gnl|Mm7|chr4 (91199167-91197951)

Expressed library(ies): 49 entry(ies)

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Expressed library(ies): 49 entry(ies)

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               ece (0.687916)
               

               
               che (0.545256)
               

               
               ecc (0.46014)
               

               
               hyp (0.42851)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               cbr (0.383926)
               

               
               sto (0.359648)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               che (0.545256)
               

               
               ecc (0.46014)
               

               
               hyp (0.42851)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               cbr (0.383926)
               

               
               sto (0.359648)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	17-1224, gnl\|bosTau2\|chr17 (18904556-18903343)
	17-1224, gnl\|Hg17\|chr6 (3923276-3924539)
	17-1224, gnl\|Mm7\|chr4 (91199167-91197951)

	ece (0.687916)
	che (0.545256)
	ecc (0.46014)
	hyp (0.42851)
	ste (0.405625)
	elu (0.385356)
	cbr (0.383926)
	sto (0.359648)
	fbs (0.350693)
	eye (0.341006)
	cut (0.339847)
	vin (0.332557)
	cje (0.330469)
	cty (0.31224)
	tbr (0.308356)
	sme (0.305437)
	csk (0.281492)
	ssp (0.271039)
	ute (0.265569)
	eep (0.245128)
	cly (0.241284)
	nms (0.213858)
	mas (0.210305)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	cag (0.151194)
	lun (0.150489)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)