Ss1.1-Tra1-TCH01H100056.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAGCATAGTCTCAGAGTCAGATGTTTCATCGTTTGAAATCCAGCGTAGTGGATTTGTGA AGCAGCTGTTGCTTTATTTGACCTCTAAAAGTGAAAAGGATGCTGTGAGCAGAGAGATCA GATTAAAGAGATTCCTTCATGTGTTTTTTTCTTCTCCACTTCCTGGAGAAGAGCCCATTG GAAGAGTAGAACCAGTGGGCAGTGCCCCTCTGTTGGCGTTAGTTCACAAGATGAACAACT GCCTCAGTCAGATGGAACAATTTCCAGTCAAAGTGCATGACTTCCCCAGTGGGAACGGGA CGGGTGGCAGCTTTTCTCTCAACAGAGGATCACAGGCTTTAAAATTTTTCAACACTCATC AGTTAAAATGCCAGTTACAAAGACACCCAGACTGTGCCAATGTGAAGCAGTGGAAGGGCG GACCTGTCAAGATTGACCCCCTGGCTTTGGTACAAGCTATCGAGAGATACCTTGTCGTTA GAGGGTATGGACGAGTAAGAGAAGATGATGAAGACAGTGACGATGACGGCTCCGACGAGG AAATTGATGAGTCTTTGGCTGCTCAGTTCTTAAATTCAGGAAATGTAAGACACAGGCTAC AGTTTTACATCGGAGAACATTTGCTGCCATATAACATGACTGTGTACCAGGCAGTCCGGC AATTCAGTATACAGGCTGAAGATGAGAGGGAATCCACGGACGATGAGAGCAATCCTCTAG GAAGAGCTGGTATCTGGACGAAAACTCACACAATCTGGTACAAACCTGTGAGAGAGGATG AAGAAAGTAATAAAGACTGTGTTGGTGGTAAAAGAGGAAGAGCCCAAACAGCTCCAACAA AAACGTCCCCTAGAAATGCAAAAAAGCATGATGAGCTATGGAATGACGGAGTGTGCCCAT CAGTATCAAATCCTCTAGAAGTTTACCTCATCCCCGCGCCACCTGAAAATATCACTTTTG AAGACCCGTCATTAGACGTGATTCTTCTTCTAAGAGTGTTACATGCCATCAGTCGATACT GGTACTACTTGTATGATAATGCCATGTGCAAGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAGCATAGTCTCAGAGTCAGATGTTTCATCGTTTGAAATCCAGCGTAGTGGATTTGTGA AGCAGCTGTTGCTTTATTTGACCTCTAAAAGTGAAAAGGATGCTGTGAGCAGAGAGATCA GATTAAAGAGATTCCTTCATGTGTTTTTTTCTTCTCCACTTCCTGGAGAAGAGCCCATTG GAAGAGTAGAACCAGTGGGCAGTGCCCCTCTGTTGGCGTTAGTTCACAAGATGAACAACT GCCTCAGTCAGATGGAACAATTTCCAGTCAAAGTGCATGACTTCCCCAGTGGGAACGGGA CGGGTGGCAGCTTTTCTCTCAACAGAGGATCACAGGCTTTAAAATTTTTCAACACTCATC AGTTAAAATGCCAGTTACAAAGACACCCAGACTGTGCCAATGTGAAGCAGTGGAAGGGCG GACCTGTCAAGATTGACCCCCTGGCTTTGGTACAAGCTATCGAGAGATACCTTGTCGTTA GAGGGTATGGACGAGTAAGAGAAGATGATGAAGACAGTGACGATGACGGCTCCGACGAGG AAATTGATGAGTCTTTGGCTGCTCAGTTCTTAAATTCAGGAAATGTAAGACACAGGCTAC AGTTTTACATCGGAGAACATTTGCTGCCATATAACATGACTGTGTACCAGGCAGTCCGGC AATTCAGTATACAGGCTGAAGATGAGAGGGAATCCACGGACGATGAGAGCAATCCTCTAG GAAGAGCTGGTATCTGGACGAAAACTCACACAATCTGGTACAAACCTGTGAGAGAGGATG AAGAAAGTAATAAAGACTGTGTTGGTGGTAAAAGAGGAAGAGCCCAAACAGCTCCAACAA AAACGTCCCCTAGAAATGCAAAAAAGCATGATGAGCTATGGAATGACGGAGTGTGCCCAT CAGTATCAAATCCTCTAGAAGTTTACCTCATCCCCGCGCCACCTGAAAATATCACTTTTG AAGACCCGTCATTAGACGTGATTCTTCTTCTAAGAGTGTTACATGCCATCAGTCGATACT GGTACTACTTGTATGATAATGCCATGTGCAAGGAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 1-158, gnl|bosTau2|chr2 (69972607-69972450) | |
| 1-158, gnl|canFam2|chr25 (45086416-45086650) | |
| 1-158, gnl|danRer3|chr18 (44205804-44205571) | |
| 1-158, gnl|dasNov1|scaffold_127013 (4012-4243) | |
| 1-158, gnl|echTel1|scaffold_311861 (4246-4019) | |
| 1-158, gnl|fr1|chrUn (244960499-244960266) | |
| 1-158, gnl|galGal2|chr9 (3593416-3593182) | |
| 1-158, gnl|hg17|chr2 (230486806-230487040) | |
| 1-158, gnl|Hg17|chr2 (230486969-230486812) | |
| 1-158, gnl|loxAfr1|scaffold_247 (32606-32840) | |
| 1-158, gnl|mm7|chr1 (84962689-84962922) | |
| 1-158, gnl|Mm7|chr1 (84962852-84962695) | |
| 1-158, gnl|monDom2|scaffold_28 (11522844-11523079) | |
| 1-158, gnl|oryCun1|scaffold_179470 (89781-90015) | |
| 1-158, gnl|panTro1|chr13 (121120367-121120601) | |
| 1-158, gnl|rheMac2|chr12 (93668847-93669081) | |
| 1-158, gnl|rn3|chr9 (84170884-84171114) | |
| 1-158, gnl|tetNig1|chrUn_random (63147267-63147056) | |
| 1-158, gnl|xenTro1|scaffold_108 (419278-419054) | |
| 309-484, gnl|bosTau2|chr2 (69969189-69969014) | |
| 309-484, gnl|canFam2|chr25 (45083335-45083457) | |
| 309-484, gnl|danRer3|chr18 (44208686-44208574) | |
| 309-484, gnl|dasNov1|scaffold_127013 (830-958) | |
| 309-484, gnl|echTel1|scaffold_261026 (1531-1406) | |
| 309-484, gnl|fr1|chrUn (244960976-244960860) | |
| 309-484, gnl|galGal2|chr9 (3596007-3595879) | |
| 309-484, gnl|hg17|chr2 (230483176-230483304) | |
| 309-484, gnl|Hg17|chr2 (230483368-230483193) | |
| 309-484, gnl|mm7|chr1 (84958532-84958660) | |
| 309-484, gnl|Mm7|chr1 (84958724-84958549) | |
| 309-484, gnl|monDom2|scaffold_28 (11519571-11519702) | |
| 309-484, gnl|oryCun1|scaffold_179470 (85470-85598) | |
| 309-484, gnl|panTro1|chr13 (121116738-121116866) | |
| 309-484, gnl|rheMac2|chr12 (93665191-93665319) | |
| 309-484, gnl|rn3|chr9 (84167913-84168041) | |
| 309-484, gnl|tetNig1|chrUn_random (63963717-63963607) | |
| 309-484, gnl|xenTro1|scaffold_108 (421254-421135) | |
| 554-758, gnl|bosTau2|chr2 (69968391-69968187) | |
| 554-758, gnl|canFam2|chr25 (45082606-45082811) | |
| 554-758, gnl|danRer3|chr18 (44210766-44210561) | |
| 554-758, gnl|dasNov1|scaffold_127013 (114-319) | |
| 554-758, gnl|echTel1|scaffold_261026 (4158-3953) | |
| 554-758, gnl|fr1|chrUn (244961456-244961254) | |
| 554-758, gnl|galGal2|chr9 (3596798-3596593) | |
| 554-758, gnl|hg17|chr2 (230482084-230482289) | |
| 554-758, gnl|Hg17|chr2 (230482290-230482086) | |
| 554-758, gnl|loxAfr1|scaffold_247 (28648-28853) | |
| 554-758, gnl|mm7|chr1 (84957354-84957559) | |
| 554-758, gnl|Mm7|chr1 (84957560-84957356) | |
| 554-758, gnl|monDom2|scaffold_28 (11518669-11518872) | |
| 554-758, gnl|oryCun1|scaffold_179470 (84228-84433) | |
| 554-758, gnl|panTro1|chr13 (121115645-121115850) | |
| 554-758, gnl|rheMac2|chr12 (93664103-93664308) | |
| 554-758, gnl|rn3|chr9 (84166566-84166771) | |
| 554-758, gnl|tetNig1|chrUn_random (63964169-63963964) | |
| 554-758, gnl|xenTro1|scaffold_108 (422098-421893) | |
| 885-1037, gnl|bosTau2|chr2 (69966206-69966054) | |
| 885-1037, gnl|canFam2|chr25 (45080232-45080430) | |
| 885-1037, gnl|danRer3|chr18 (44213103-44212907) | |
| 885-1037, gnl|dasNov1|scaffold_196053 (4268-4466) | |
| 885-1037, gnl|echTel1|scaffold_261026 (6116-5937) | |
| 885-1037, gnl|fr1|chrUn (244962201-244962036) | |
| 885-1037, gnl|galGal2|chr9 (3597586-3597396) | |
| 885-1037, gnl|hg17|chr2 (230479826-230480023) | |
| 885-1037, gnl|Hg17|chr2 (230479984-230479832) | |
| 885-1037, gnl|loxAfr1|scaffold_34666 (4594-4398) | |
| 885-1037, gnl|mm7|chr1 (84955718-84955918) | |
| 885-1037, gnl|Mm7|chr1 (84955876-84955724) | |
| 885-1037, gnl|monDom2|scaffold_28 (11515664-11515863) | |
| 885-1037, gnl|oryCun1|scaffold_179470 (82222-82435) | |
| 885-1037, gnl|panTro1|chr13 (121113404-121113601) | |
| 885-1037, gnl|rheMac2|chr12 (93661836-93662033) | |
| 885-1037, gnl|rn3|chr9 (84165033-84165233) | |
| 885-1037, gnl|tetNig1|chrUn_random (46007922-46007789) | |
| 885-1037, gnl|xenTro1|scaffold_108 (423782-423590) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-158, gnl|bosTau2|chr2 (69972607-69972450) | |
| 1-158, gnl|canFam2|chr25 (45086416-45086650) | |
| 1-158, gnl|danRer3|chr18 (44205804-44205571) | |
| 1-158, gnl|dasNov1|scaffold_127013 (4012-4243) | |
| 1-158, gnl|echTel1|scaffold_311861 (4246-4019) | |
| 1-158, gnl|fr1|chrUn (244960499-244960266) | |
| 1-158, gnl|galGal2|chr9 (3593416-3593182) | |
| 1-158, gnl|hg17|chr2 (230486806-230487040) | |
| 1-158, gnl|Hg17|chr2 (230486969-230486812) | |
| 1-158, gnl|loxAfr1|scaffold_247 (32606-32840) | |
| 1-158, gnl|mm7|chr1 (84962689-84962922) | |
| 1-158, gnl|Mm7|chr1 (84962852-84962695) | |
| 1-158, gnl|monDom2|scaffold_28 (11522844-11523079) | |
| 1-158, gnl|oryCun1|scaffold_179470 (89781-90015) | |
| 1-158, gnl|panTro1|chr13 (121120367-121120601) | |
| 1-158, gnl|rheMac2|chr12 (93668847-93669081) | |
| 1-158, gnl|rn3|chr9 (84170884-84171114) | |
| 1-158, gnl|tetNig1|chrUn_random (63147267-63147056) | |
| 1-158, gnl|xenTro1|scaffold_108 (419278-419054) | |
| 309-484, gnl|bosTau2|chr2 (69969189-69969014) | |
| 309-484, gnl|canFam2|chr25 (45083335-45083457) | |
| 309-484, gnl|danRer3|chr18 (44208686-44208574) | |
| 309-484, gnl|dasNov1|scaffold_127013 (830-958) | |
| 309-484, gnl|echTel1|scaffold_261026 (1531-1406) | |
| 309-484, gnl|fr1|chrUn (244960976-244960860) | |
| 309-484, gnl|galGal2|chr9 (3596007-3595879) | |
| 309-484, gnl|hg17|chr2 (230483176-230483304) | |
| 309-484, gnl|Hg17|chr2 (230483368-230483193) | |
| 309-484, gnl|mm7|chr1 (84958532-84958660) | |
| 309-484, gnl|Mm7|chr1 (84958724-84958549) | |
| 309-484, gnl|monDom2|scaffold_28 (11519571-11519702) | |
| 309-484, gnl|oryCun1|scaffold_179470 (85470-85598) | |
| 309-484, gnl|panTro1|chr13 (121116738-121116866) | |
| 309-484, gnl|rheMac2|chr12 (93665191-93665319) | |
| 309-484, gnl|rn3|chr9 (84167913-84168041) | |
| 309-484, gnl|tetNig1|chrUn_random (63963717-63963607) | |
| 309-484, gnl|xenTro1|scaffold_108 (421254-421135) | |
| 554-758, gnl|bosTau2|chr2 (69968391-69968187) | |
| 554-758, gnl|canFam2|chr25 (45082606-45082811) | |
| 554-758, gnl|danRer3|chr18 (44210766-44210561) | |
| 554-758, gnl|dasNov1|scaffold_127013 (114-319) | |
| 554-758, gnl|echTel1|scaffold_261026 (4158-3953) | |
| 554-758, gnl|fr1|chrUn (244961456-244961254) | |
| 554-758, gnl|galGal2|chr9 (3596798-3596593) | |
| 554-758, gnl|hg17|chr2 (230482084-230482289) | |
| 554-758, gnl|Hg17|chr2 (230482290-230482086) | |
| 554-758, gnl|loxAfr1|scaffold_247 (28648-28853) | |
| 554-758, gnl|mm7|chr1 (84957354-84957559) | |
| 554-758, gnl|Mm7|chr1 (84957560-84957356) | |
| 554-758, gnl|monDom2|scaffold_28 (11518669-11518872) | |
| 554-758, gnl|oryCun1|scaffold_179470 (84228-84433) | |
| 554-758, gnl|panTro1|chr13 (121115645-121115850) | |
| 554-758, gnl|rheMac2|chr12 (93664103-93664308) | |
| 554-758, gnl|rn3|chr9 (84166566-84166771) | |
| 554-758, gnl|tetNig1|chrUn_random (63964169-63963964) | |
| 554-758, gnl|xenTro1|scaffold_108 (422098-421893) | |
| 885-1037, gnl|bosTau2|chr2 (69966206-69966054) | |
| 885-1037, gnl|canFam2|chr25 (45080232-45080430) | |
| 885-1037, gnl|danRer3|chr18 (44213103-44212907) | |
| 885-1037, gnl|dasNov1|scaffold_196053 (4268-4466) | |
| 885-1037, gnl|echTel1|scaffold_261026 (6116-5937) | |
| 885-1037, gnl|fr1|chrUn (244962201-244962036) | |
| 885-1037, gnl|galGal2|chr9 (3597586-3597396) | |
| 885-1037, gnl|hg17|chr2 (230479826-230480023) | |
| 885-1037, gnl|Hg17|chr2 (230479984-230479832) | |
| 885-1037, gnl|loxAfr1|scaffold_34666 (4594-4398) | |
| 885-1037, gnl|mm7|chr1 (84955718-84955918) | |
| 885-1037, gnl|Mm7|chr1 (84955876-84955724) | |
| 885-1037, gnl|monDom2|scaffold_28 (11515664-11515863) | |
| 885-1037, gnl|oryCun1|scaffold_179470 (82222-82435) | |
| 885-1037, gnl|panTro1|chr13 (121113404-121113601) | |
| 885-1037, gnl|rheMac2|chr12 (93661836-93662033) | |
| 885-1037, gnl|rn3|chr9 (84165033-84165233) | |
| 885-1037, gnl|tetNig1|chrUn_random (46007922-46007789) | |
| 885-1037, gnl|xenTro1|scaffold_108 (423782-423590) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| ese (0.126502) |