Ss1.1-Tra1-TCH01H100058.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGTTCCTCTCGTGCAACACGTCCCGCAGCTCCTGCAGTGTGAATCGGGGGCGGTTGGG GTCCTTGAGATCCATGGCCACCTTCTCCGCCTCGGAGACACACTCCTCTCCACCCGGCTC CATCTCAGGTTCCTCATCTCCATTCTGGCTGAGCTCGCCTTGCAGCCTCTCTCGCAGCTT CCCAAGCTCTGCCCGCAGGCTGCCCATCTCCTGCTCCTTGGTTTGTAGATCTGCCTCTAA TTCTACCTTCTGTTCAATCAGGGCTTTCCCCTGGGCCTCCACCACTGTGACACGATGCCG GAGGTCATGGTTGATCTTCATCAGCCGGGTCTGCTGCTGCTGCAGAGCCTCGACATCCTC ATTCTTCAGCCCGAGCTCCCGGTCCTTGGCACGGATCTCGTCCCGCTGTTTGTCTACCAC CTCCTTCAGCTTCTTCATCACCTGCCGTTCCCGTTCTGACATGCCTTCATGCTTCTGAAA CTCCTCCTCAGAGAAGCTGACGTCCTTGTGGGAGAGGTTGGTCATGAGCTGTTTGTTCTC CTCCTGCAGCTGGGCGATCTGGGAAAGGAGGTCTTGAGCTTCCCCTCGCCACACATCCTC CACCAGCTCCAGCTCCTTCTGGTGCTTGCGCTCCTTCTCGATGCGGTCCATCCTCTCCAG GCGCAGACGATCCAGCTCGAGGCGCAGCTCGTCCAGCTCTGGTGCGACGTGGTGGCGGCT GACCAGCACCTCCAGGATCTCCAGGACGCGCACGACCTTGGGCATGAGGCGCGCGATGGC CTCGCAGCCGTGCTGGTCGATGACCCGCTCGAACTCGTGGCCCACGAGCGACGCGATGTC GTACACGTCCATGACGGTCAGCTCCGCCACATTCTTCTCCAGCGCTGACTCGGCTGCTAG CGCCGACCCCCGGTCCTCCTCCATGGCCCCCCGCCCGGCCTCTCCCTCACCCCGCAAACT AGTGCAACTCCCAAACTTGCCGCTGTCGAGGGCAGCGCCGGGCCGGGCCCACCTCCCTCT GCCGCCGCCGGCCCGCGCTTAGCTGGTCCTCCGGCGAGGGCGCACCGGGCGGGCGGCGGG CGTCGGCATGGGCGGAGGCGACCGGCCGGGAGCCAGAGGTCAGCGCGCCGGGTGCGGGTC TCCGCGCCCCGCTCGGCCCAGAGCCTGCTCCCCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGTTCCTCTCGTGCAACACGTCCCGCAGCTCCTGCAGTGTGAATCGGGGGCGGTTGGG GTCCTTGAGATCCATGGCCACCTTCTCCGCCTCGGAGACACACTCCTCTCCACCCGGCTC CATCTCAGGTTCCTCATCTCCATTCTGGCTGAGCTCGCCTTGCAGCCTCTCTCGCAGCTT CCCAAGCTCTGCCCGCAGGCTGCCCATCTCCTGCTCCTTGGTTTGTAGATCTGCCTCTAA TTCTACCTTCTGTTCAATCAGGGCTTTCCCCTGGGCCTCCACCACTGTGACACGATGCCG GAGGTCATGGTTGATCTTCATCAGCCGGGTCTGCTGCTGCTGCAGAGCCTCGACATCCTC ATTCTTCAGCCCGAGCTCCCGGTCCTTGGCACGGATCTCGTCCCGCTGTTTGTCTACCAC CTCCTTCAGCTTCTTCATCACCTGCCGTTCCCGTTCTGACATGCCTTCATGCTTCTGAAA CTCCTCCTCAGAGAAGCTGACGTCCTTGTGGGAGAGGTTGGTCATGAGCTGTTTGTTCTC CTCCTGCAGCTGGGCGATCTGGGAAAGGAGGTCTTGAGCTTCCCCTCGCCACACATCCTC CACCAGCTCCAGCTCCTTCTGGTGCTTGCGCTCCTTCTCGATGCGGTCCATCCTCTCCAG GCGCAGACGATCCAGCTCGAGGCGCAGCTCGTCCAGCTCTGGTGCGACGTGGTGGCGGCT GACCAGCACCTCCAGGATCTCCAGGACGCGCACGACCTTGGGCATGAGGCGCGCGATGGC CTCGCAGCCGTGCTGGTCGATGACCCGCTCGAACTCGTGGCCCACGAGCGACGCGATGTC GTACACGTCCATGACGGTCAGCTCCGCCACATTCTTCTCCAGCGCTGACTCGGCTGCTAG CGCCGACCCCCGGTCCTCCTCCATGGCCCCCCGCCCGGCCTCTCCCTCACCCCGCAAACT AGTGCAACTCCCAAACTTGCCGCTGTCGAGGGCAGCGCCGGGCCGGGCCCACCTCCCTCT GCCGCCGCCGGCCCGCGCTTAGCTGGTCCTCCGGCGAGGGCGCACCGGGCGGGCGGCGGG CGTCGGCATGGGCGGAGGCGACCGGCCGGGAGCCAGAGGTCAGCGCGCCGGGTGCGGGTC TCCGCGCCCCGCTCGGCCCAGAGCCTGCTCCCCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 157-276, - strand, RNAz p=0.710212 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 157-276, - strand, RNAz p=0.710212 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 121-345, gnl|bosTau2|chr17 (26520560-26520784) | |
| 121-345, gnl|Hg17|chr12 (122507968-122508192) | |
| 121-345, gnl|Mm7|chr5 (123760379-123760606) | |
| 347-466, gnl|bosTau2|chr17 (26521449-26521568) | |
| 347-466, gnl|canFam2|chr26 (9111909-9111783) | |
| 347-466, gnl|danRer3|chr23 (35679875-35679750) | |
| 347-466, gnl|echTel1|scaffold_285823 (4188-4062) | |
| 347-466, gnl|fr1|chrUn (35831269-35831144) | |
| 347-466, gnl|galGal2|chr15 (4932522-4932396) | |
| 347-466, gnl|hg17|chr12 (122508840-122508966) | |
| 347-466, gnl|Hg17|chr12 (122508846-122508965) | |
| 347-466, gnl|loxAfr1|scaffold_24106 (18210-18336) | |
| 347-466, gnl|mm7|chr5 (123761376-123761502) | |
| 347-466, gnl|Mm7|chr5 (123761382-123761501) | |
| 347-466, gnl|oryCun1|scaffold_208825 (44737-44611) | |
| 347-466, gnl|panTro1|chrUn_random (65059152-65059278) | |
| 347-466, gnl|rheMac2|chr11 (124783193-124783319) | |
| 347-466, gnl|rn3|chr12 (33064354-33064228) | |
| 347-466, gnl|tetNig1|chrUn_random (1243420-1243295) | |
| 347-466, gnl|xenTro1|scaffold_100 (2172846-2172972) | |
| 615-1176, gnl|bosTau2|chr17 (26539313-26539876) | |
| 615-1176, gnl|Hg17|chr12 (122542600-122543146) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-345, gnl|bosTau2|chr17 (26520560-26520784) | |
| 121-345, gnl|Hg17|chr12 (122507968-122508192) | |
| 121-345, gnl|Mm7|chr5 (123760379-123760606) | |
| 347-466, gnl|bosTau2|chr17 (26521449-26521568) | |
| 347-466, gnl|canFam2|chr26 (9111909-9111783) | |
| 347-466, gnl|danRer3|chr23 (35679875-35679750) | |
| 347-466, gnl|echTel1|scaffold_285823 (4188-4062) | |
| 347-466, gnl|fr1|chrUn (35831269-35831144) | |
| 347-466, gnl|galGal2|chr15 (4932522-4932396) | |
| 347-466, gnl|hg17|chr12 (122508840-122508966) | |
| 347-466, gnl|Hg17|chr12 (122508846-122508965) | |
| 347-466, gnl|loxAfr1|scaffold_24106 (18210-18336) | |
| 347-466, gnl|mm7|chr5 (123761376-123761502) | |
| 347-466, gnl|Mm7|chr5 (123761382-123761501) | |
| 347-466, gnl|oryCun1|scaffold_208825 (44737-44611) | |
| 347-466, gnl|panTro1|chrUn_random (65059152-65059278) | |
| 347-466, gnl|rheMac2|chr11 (124783193-124783319) | |
| 347-466, gnl|rn3|chr12 (33064354-33064228) | |
| 347-466, gnl|tetNig1|chrUn_random (1243420-1243295) | |
| 347-466, gnl|xenTro1|scaffold_100 (2172846-2172972) | |
| 615-1176, gnl|bosTau2|chr17 (26539313-26539876) | |
| 615-1176, gnl|Hg17|chr12 (122542600-122543146) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) | |
| bla (0.124347) | |
| pgl (0.118483) |