Ss1.1-Tra1-TCH01H100090.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGTCCGAGTGGAGCGAGCGAGCTGAGTGGTTGTGTGGTCGCGTCCCGGAGACCGGTAGC GCTTGCAGCATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAGTTCAAAGAAGCTTTT TCACTATTTGACAAGGATGGTGATGGAACTATAACAACAAAGGAATTGGGAACTGTAATG AGGTCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTAATGAAGTAGAT GCTGATGGTAACGGCACAATTGACTTCCCAGAATTTCTGACAATGATGGCAAGAAAAATG AAAGATACAGACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGC AATGGCTATATTAGTGCAGCAGAGCTTCGCCATGTGATGACAAACCTTGGAGAGAAGTTA ACAGATGAAGAGGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTGATGGTCAAGTA AACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGAAGACGTTGTACAGAATGTGTT AAATTTCTTGTACAAAATTGTTTATTTGCCTTTTCTTTGTTTGTAACTTATCTGTAAAAG GTTTCCCCTACTGTCAAAAAAAAAAAAAATATGCATGTATAGTAATTAGGACTTCATTCC TCCATGTTTTCTTCCCTTATCTTACTGTCATTGTCCTGAAACCTTATTTTAGAAAATTGA TCAAGTAACATGTTGCATGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACATCTAA ACTTAGATGGAGTTGGTCAAATGAGGGAACATCTGGGTTATGCCTTTTTTTTTTAAGTAG TTTTCTTTAGGAACTGTCAGCATGTTGTTGTTAAAGTGTGGAGTTGTAACTCTGCGTGGA CTATGGACAGTCAACAATATGTACTTAAAAGTTGCACTATTGCAAAACGGGTGTTTTATC CAGGTACTCGTACACTATTTTTTTGTACTGCTGGTCCTGTACCAGAAACATTTTCTTTTA TTGTTACTTGCTTTTTAAACTTTGTTTTAGCCACTTAAAGAAAATCTGCTTATGGCACAA TTTGCCTCAAATCCATTCCAAGTTGTATATTTGTTTTCCAATAAAAAAATTACAATTTAC CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGTCCGAGTGGAGCGAGCGAGCTGAGTGGTTGTGTGGTCGCGTCCCGGAGACCGGTAGC GCTTGCAGCATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAGTTCAAAGAAGCTTTT TCACTATTTGACAAGGATGGTGATGGAACTATAACAACAAAGGAATTGGGAACTGTAATG AGGTCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTAATGAAGTAGAT GCTGATGGTAACGGCACAATTGACTTCCCAGAATTTCTGACAATGATGGCAAGAAAAATG AAAGATACAGACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGC AATGGCTATATTAGTGCAGCAGAGCTTCGCCATGTGATGACAAACCTTGGAGAGAAGTTA ACAGATGAAGAGGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTGATGGTCAAGTA AACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGAAGACGTTGTACAGAATGTGTT AAATTTCTTGTACAAAATTGTTTATTTGCCTTTTCTTTGTTTGTAACTTATCTGTAAAAG GTTTCCCCTACTGTCAAAAAAAAAAAAAATATGCATGTATAGTAATTAGGACTTCATTCC TCCATGTTTTCTTCCCTTATCTTACTGTCATTGTCCTGAAACCTTATTTTAGAAAATTGA TCAAGTAACATGTTGCATGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACATCTAA ACTTAGATGGAGTTGGTCAAATGAGGGAACATCTGGGTTATGCCTTTTTTTTTTAAGTAG TTTTCTTTAGGAACTGTCAGCATGTTGTTGTTAAAGTGTGGAGTTGTAACTCTGCGTGGA CTATGGACAGTCAACAATATGTACTTAAAAGTTGCACTATTGCAAAACGGGTGTTTTATC CAGGTACTCGTACACTATTTTTTTGTACTGCTGGTCCTGTACCAGAAACATTTTCTTTTA TTGTTACTTGCTTTTTAAACTTTGTTTTAGCCACTTAAAGAAAATCTGCTTATGGCACAA TTTGCCTCAAATCCATTCCAAGTTGTATATTTGTTTTCCAATAAAAAAATTACAATTTAC CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 829-948, - strand, RNAz p=0.795678 | |
| 978-1095, - strand, RNAz p=0.861001 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 829-948, - strand, RNAz p=0.795678 | |
| 978-1095, - strand, RNAz p=0.861001 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 2-1155, gnl|bosTau2|chr18 (40054541-40055699) | |
| 2-1155, gnl|Hg17|chr10 (71593375-71594503) | |
| 2-1155, gnl|Mm7|chrX (43102206-43103323) | |
| 69-497, gnl|bosTau2|chr13 (29058127-29057702) | |
| 69-497, gnl|Hg17|chr10 (5531408-5530983) | |
| 69-497, gnl|Mm7|chr13 (3738636-3739053) | |
| 98-255, gnl|bosTau2|chr10 (69309841-69309684) | |
| 98-255, gnl|canFam2|chr8 (64442345-64442523) | |
| 98-255, gnl|danRer3|chr17 (32053103-32052950) | |
| 98-255, gnl|dasNov1|scaffold_43485 (248-426) | |
| 98-255, gnl|echTel1|scaffold_282638 (14756-14608) | |
| 98-255, gnl|fr1|chrUn (137217825-137217993) | |
| 98-255, gnl|galGal2|chr5 (40675653-40675818) | |
| 98-255, gnl|hg17|chr14 (89937321-89937499) | |
| 98-255, gnl|Hg17|chr14 (89937350-89937507) | |
| 98-255, gnl|loxAfr1|scaffold_8914 (23129-22989) | |
| 98-255, gnl|mm7|chr12 (97698900-97699070) | |
| 98-255, gnl|Mm7|chr12 (97698921-97699078) | |
| 98-255, gnl|monDom2|scaffold_8 (35059950-35059768) | |
| 98-255, gnl|oryCun1|scaffold_191855 (47718-47539) | |
| 98-255, gnl|panTro1|chr15 (90203430-90203608) | |
| 98-255, gnl|rheMac2|chr7 (153612831-153613009) | |
| 98-255, gnl|rn3|chr6 (124485668-124485846) | |
| 98-255, gnl|tetNig1|chr14 (8622867-8623012) | |
| 98-255, gnl|xenTro1|scaffold_22 (2312074-2312256) | |
| 353-490, gnl|bosTau2|chr10 (69307073-69306936) | |
| 353-490, gnl|canFam2|chr8 (64445141-64445296) | |
| 353-490, gnl|danRer3|chr17 (32051100-32050954) | |
| 353-490, gnl|dasNov1|scaffold_43485 (3488-3641) | |
| 353-490, gnl|echTel1|scaffold_184842 (3751-3893) | |
| 353-490, gnl|fr1|chrUn (137220690-137220841) | |
| 353-490, gnl|galGal2|chr5 (40679244-40679413) | |
| 353-490, gnl|hg17|chr14 (89940474-89940625) | |
| 353-490, gnl|Hg17|chr14 (89940474-89940611) | |
| 353-490, gnl|loxAfr1|scaffold_3280 (43067-42915) | |
| 353-490, gnl|mm7|chr12 (97701448-97701595) | |
| 353-490, gnl|Mm7|chr12 (97701448-97701585) | |
| 353-490, gnl|monDom2|scaffold_8 (35056097-35055953) | |
| 353-490, gnl|oryCun1|scaffold_191855 (45330-45179) | |
| 353-490, gnl|panTro1|chr15 (90206575-90206726) | |
| 353-490, gnl|rheMac2|chr7 (153615961-153616112) | |
| 353-490, gnl|rn3|chr6 (124488221-124488365) | |
| 353-490, gnl|tetNig1|chr14 (8625299-8625452) | |
| 353-490, gnl|xenTro1|scaffold_22 (2314113-2314258) | |
| 825-1141, gnl|bosTau2|chr12 (22350984-22351290) | |
| 825-1141, gnl|Hg17|chr2 (47299251-47298957) | |
| 825-1141, gnl|Mm7|chrX (43103032-43103323) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-1155, gnl|bosTau2|chr18 (40054541-40055699) | |
| 2-1155, gnl|Hg17|chr10 (71593375-71594503) | |
| 2-1155, gnl|Mm7|chrX (43102206-43103323) | |
| 69-497, gnl|bosTau2|chr13 (29058127-29057702) | |
| 69-497, gnl|Hg17|chr10 (5531408-5530983) | |
| 69-497, gnl|Mm7|chr13 (3738636-3739053) | |
| 98-255, gnl|bosTau2|chr10 (69309841-69309684) | |
| 98-255, gnl|canFam2|chr8 (64442345-64442523) | |
| 98-255, gnl|danRer3|chr17 (32053103-32052950) | |
| 98-255, gnl|dasNov1|scaffold_43485 (248-426) | |
| 98-255, gnl|echTel1|scaffold_282638 (14756-14608) | |
| 98-255, gnl|fr1|chrUn (137217825-137217993) | |
| 98-255, gnl|galGal2|chr5 (40675653-40675818) | |
| 98-255, gnl|hg17|chr14 (89937321-89937499) | |
| 98-255, gnl|Hg17|chr14 (89937350-89937507) | |
| 98-255, gnl|loxAfr1|scaffold_8914 (23129-22989) | |
| 98-255, gnl|mm7|chr12 (97698900-97699070) | |
| 98-255, gnl|Mm7|chr12 (97698921-97699078) | |
| 98-255, gnl|monDom2|scaffold_8 (35059950-35059768) | |
| 98-255, gnl|oryCun1|scaffold_191855 (47718-47539) | |
| 98-255, gnl|panTro1|chr15 (90203430-90203608) | |
| 98-255, gnl|rheMac2|chr7 (153612831-153613009) | |
| 98-255, gnl|rn3|chr6 (124485668-124485846) | |
| 98-255, gnl|tetNig1|chr14 (8622867-8623012) | |
| 98-255, gnl|xenTro1|scaffold_22 (2312074-2312256) | |
| 353-490, gnl|bosTau2|chr10 (69307073-69306936) | |
| 353-490, gnl|canFam2|chr8 (64445141-64445296) | |
| 353-490, gnl|danRer3|chr17 (32051100-32050954) | |
| 353-490, gnl|dasNov1|scaffold_43485 (3488-3641) | |
| 353-490, gnl|echTel1|scaffold_184842 (3751-3893) | |
| 353-490, gnl|fr1|chrUn (137220690-137220841) | |
| 353-490, gnl|galGal2|chr5 (40679244-40679413) | |
| 353-490, gnl|hg17|chr14 (89940474-89940625) | |
| 353-490, gnl|Hg17|chr14 (89940474-89940611) | |
| 353-490, gnl|loxAfr1|scaffold_3280 (43067-42915) | |
| 353-490, gnl|mm7|chr12 (97701448-97701595) | |
| 353-490, gnl|Mm7|chr12 (97701448-97701585) | |
| 353-490, gnl|monDom2|scaffold_8 (35056097-35055953) | |
| 353-490, gnl|oryCun1|scaffold_191855 (45330-45179) | |
| 353-490, gnl|panTro1|chr15 (90206575-90206726) | |
| 353-490, gnl|rheMac2|chr7 (153615961-153616112) | |
| 353-490, gnl|rn3|chr6 (124488221-124488365) | |
| 353-490, gnl|tetNig1|chr14 (8625299-8625452) | |
| 353-490, gnl|xenTro1|scaffold_22 (2314113-2314258) | |
| 825-1141, gnl|bosTau2|chr12 (22350984-22351290) | |
| 825-1141, gnl|Hg17|chr2 (47299251-47298957) | |
| 825-1141, gnl|Mm7|chrX (43103032-43103323) |
| Expressed library(ies): 90 entry(ies) | More info |
| Expressed library(ies): 90 entry(ies) | Help | Less info |
| clu (31.1079) | |
| cbr (7.16662) | |
| pro (6.14439) | |
| fco (4.87345) | |
| sug (3.94603) | |
| tra (3.56967) | |
| liv (3.07197) | |
| lyg (3.06136) | |
| fcc (2.76899) | |
| spl (2.43414) | |
| rec (2.42298) | |
| ret (2.3172) | |
| ece (2.29305) | |
| pgl (2.25118) | |
| ski (2.20103) | |
| bla (2.1139) | |
| mgp (2.07612) | |
| csk (1.97044) | |
| ova (1.93698) | |
| sin (1.92442) | |
| cty (1.87344) | |
| sme (1.83262) | |
| sag (1.82715) | |
| kid (1.81629) | |
| mcp (1.70648) | |
| cut (1.69924) | |
| tes (1.66251) | |
| ebs (1.65622) | |
| thg (1.64828) | |
| fat (1.6217) | |
| cbl (1.60716) | |
| lin (1.60163) | |
| aor (1.56219) | |
| tbr (1.54178) | |
| ste (1.48729) | |
| mga (1.44185) | |
| fce (1.35796) | |
| nmm (1.32802) | |
| nco (1.29387) | |
| hyp (1.28553) | |
| spc (1.24702) | |
| fty (1.23088) | |
| ldo (1.16403) | |
| cki (1.15664) | |
| nep (1.10355) | |
| eje (1.08717) | |
| duo (1.03681) | |
| pty (0.999001) | |
| vin (0.997672) | |
| cst (0.980255) | |
| che (0.954198) | |
| cmu (0.931966) | |
| med (0.930016) | |
| ecc (0.920281) | |
| hea (0.817996) | |
| col (0.780031) | |
| nlu (0.766724) | |
| lun (0.752445) | |
| gul (0.710353) | |
| fhi (0.678311) | |
| ssp (0.677599) | |
| ute (0.663922) | |
| nje (0.66368) | |
| isp (0.601504) | |
| jca (0.569801) | |
| sto (0.539471) | |
| ill (0.526778) | |
| cbe (0.478469) | |
| nms (0.427716) | |
| amn (0.417711) | |
| nca (0.410621) | |
| jej (0.395687) | |
| elu (0.385356) | |
| mgm (0.360685) | |
| ton (0.351) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| eli (0.303628) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| ese (0.253004) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pan (0.23596) | |
| mas (0.210305) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| cje (0.165235) | |
| bfe (0.149858) | |
| hlv (0.139256) |
| Expressed library(ies): 90 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (31.1079) | |
| cbr (7.16662) | |
| pro (6.14439) | |
| fco (4.87345) | |
| sug (3.94603) | |
| tra (3.56967) | |
| liv (3.07197) | |
| lyg (3.06136) | |
| fcc (2.76899) | |
| spl (2.43414) | |
| rec (2.42298) | |
| ret (2.3172) | |
| ece (2.29305) | |
| pgl (2.25118) | |
| ski (2.20103) | |
| bla (2.1139) | |
| mgp (2.07612) | |
| csk (1.97044) | |
| ova (1.93698) | |
| sin (1.92442) | |
| cty (1.87344) | |
| sme (1.83262) | |
| sag (1.82715) | |
| kid (1.81629) | |
| mcp (1.70648) | |
| cut (1.69924) | |
| tes (1.66251) | |
| ebs (1.65622) | |
| thg (1.64828) | |
| fat (1.6217) | |
| cbl (1.60716) | |
| lin (1.60163) | |
| aor (1.56219) | |
| tbr (1.54178) | |
| ste (1.48729) | |
| mga (1.44185) | |
| fce (1.35796) | |
| nmm (1.32802) | |
| nco (1.29387) | |
| hyp (1.28553) | |
| spc (1.24702) | |
| fty (1.23088) | |
| ldo (1.16403) | |
| cki (1.15664) | |
| nep (1.10355) | |
| eje (1.08717) | |
| duo (1.03681) | |
| pty (0.999001) | |
| vin (0.997672) | |
| cst (0.980255) | |
| che (0.954198) | |
| cmu (0.931966) | |
| med (0.930016) | |
| ecc (0.920281) | |
| hea (0.817996) | |
| col (0.780031) | |
| nlu (0.766724) | |
| lun (0.752445) | |
| gul (0.710353) | |
| fhi (0.678311) | |
| ssp (0.677599) | |
| ute (0.663922) | |
| nje (0.66368) | |
| isp (0.601504) | |
| jca (0.569801) | |
| sto (0.539471) | |
| ill (0.526778) | |
| cbe (0.478469) | |
| nms (0.427716) | |
| amn (0.417711) | |
| nca (0.410621) | |
| jej (0.395687) | |
| elu (0.385356) | |
| mgm (0.360685) | |
| ton (0.351) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| eli (0.303628) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| ese (0.253004) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pan (0.23596) | |
| mas (0.210305) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| cje (0.165235) | |
| bfe (0.149858) | |
| hlv (0.139256) |