Ss1.1-Tra1-TCH01H100097.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCTGGTCAGCGGAAACAGTCCGTCCCCAGCATGACCAATAAGAAGTGCGGAAAGGGGC CCCGTCCCGCCTCCTGATGATTAGAGGGTCTCCCTTCTCGAGCGAGGTCCCGCCTCAGCC CCGCCCTGTGGGCCCTGAGGGTCTCGCGGCTGCGCGTGGTGGGGCTGCAGCCTCGCTCCG GCGCGGGCTCCGATGCCGGTATTGACTGGTAGGGCTAACCTGGTGTGTATAGCTACCACT GGTGCTTGCAAGCCGGTTTTTATTTAGTTGATCCTCTCTCCCTCTGAGGTTTGGGATCCC TGCAGTCTTCTCATCTGGTGATGGAGCTCTCAAGTCCTTCCAGAGAGGAGTGTCCCAGAC CCCAGGGCAGAGTAGGTATCATGGCCGCCAGCCTCATGGGATTGCTTCTACTTCAAGCAG CATCATGGGCATCAGGTGCCCGCCCCTGCAGCCCTAAAAGCTTTGGGTACAGCTCAGTGG TCTGTGTTTGCAATGCCACCTACTGTGATTCTCTTGACCCCCTGACCCTGCCTGACCCTG GCACCTTCAGCCGCTTTGAGAGCACACGCAGCGGGCGCCGAATGGAGCTGAGCCTGGGGA CCTTCCAGGCCAACCGCACAAGCAAAGGGCTTCTACTGACCCTGCAGCCAGATCAGAAGT TCCAGAAAGTGAAGGGATTTGGAGGGGCCATGACAGATGCTGCTGCTCTCAACATCCTTG CCCTGTCACCCCAGGCCCGGAATTTGCTACTCAAATCATACTTCTCTGAAGAAGGAATTG AATACAATATCATCCGGGTGCCTATGGCCAGCTGTGACTTCTCCATCCGCATCTACACCT ATGCCGACACCCCTGATGACTTCCAGTTGCTCAACTTCAGCCTCCCCGAGGAAGATGTCA AGCTCAAGATACCCCTGATTCACCAAGCCCTGAAGATGGCCCAGCGCCCTGTCTCCCTCT TTGCCAGTCCCTGGACATCACCCACTTGGCTCAAAACCAATGGGGCAGTGAATGGGAAGG GGACACTCAAGGGTCATCCGGGGGATCGCTACCACCAGACCTGGGCCAAATACTTTGTCA AGTTCCTGGATGCCTATGCTGAGCACAATTTACACTTCTGGGCAGTGACAGCCGAGAACG AGCCTTCTGCAGGGCTCTTTACTGGGTACCCCTTCCAGTGCCTGGGCTTCACCCCCGAAC ACCAGCGAGACTTCATTGCCCGTGACCTGGGTCCCACCCTGGCCAATAGTACACACCGCA ATGTCCGTCTGCTCATGCTGGATGACCAGCGCTTGCTGCTGCCCCACTGGGCCCAGGTGG TGCTGGCGGACCCAGAGGCGGCTAAGTACGTTCATGGCATTGCTGTACACTGGTACCTGG ACTTTCTGGCTCCAGCAAAAGCCACCCTGGGGGAGACACACCGCCTGTTCCCCAACACCA TGCTTTTTGCCTCAGAGGCCTGTGTGGGTTCCAAGTTCTGGGAGCAGAGCGTACGGCTGG GCTCCTGGGATCGAGGGGTGCAGTATAGCCACAGCATCATCACGAACCTCCTCTACCACG TGGTTGGCTGGACTGACTGGAACCTCGCCCTGAACCCCGAAGGGGGACCCAACTGGGTGC GCAACTTTGTCGACAGCCCCATCATCGTAGACATCTCCAAGGACACATTCTACAAACAGC CCATGTTTTACCACCTTGGCCACTTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGTGG GGCTGGCTGCCAGTGAGAAGAACAACTTGGACACGGTGGCACTGCTGCGCCCCGATGGCT CGGCCGTTGTGGTCGTGCTAAACCGCTCCTCGAAGGATGTGCCTCTCACCATCAAGGATC CGGCTCTGGGCTTCCTGGAAACGATCTCACCCGGCTACTCCATTCACACCTACCTGTGGC ATCGCAAGTGATGGAGCAGATACCGAAGCAGGCGCCTGGGCCCGGCATGGACATTAAAGA GACAGAGTCAGCTCAAAAAAAAAATGTGGCTGTAGAGGGTACAGCAGGGCCGAAGGGATC TTAGGTGACGTAAGCCTGGAGGCCGTGGTTTGGGTGACTCACTCTCCCCTCTAGTTGCTG CCAGGGGCTAGAGGCCCCTAGGGAAGGGATCAGGAAGCCCCGGTGGTCCCCCACCCCCAT GCCTGTGTGAGCGTGTGCTATGCGCTGGTTGCCTGTGGAAACTGGGCCCAGGCCCAGGGT GGTGAGCTCACTGTCTGCACAAACACGGGGGGTGGGGGGTGGGGGGAGAGGTTAAGGAAA GGAAGAGACTAGGAAAGCCGGACCCAAAACTGGGAACTGTTTGTCTTTCTTGAAGATGTA GAACCAGGCCCATACAGATGTCAGCACTAGGGCACAGGCAGCGAGAGAAGCCAAGCACCC GTGGGTAGACTCAAGCACCCAGGTGACCCCCTGCTTCGTACCAGCTAGGAAAAATGACCG CCTCTTGAAGGAGAGAATGTTTGATCCCCGTCATTGTGAGCAGGTTTATTCTGGGGGTGG CACCACATTTCCAGCCATACCAACAACGGGGAAACAGAGGGGCCCCTGGAATGCATGACA GTAAAAAAATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCTGGTCAGCGGAAACAGTCCGTCCCCAGCATGACCAATAAGAAGTGCGGAAAGGGGC CCCGTCCCGCCTCCTGATGATTAGAGGGTCTCCCTTCTCGAGCGAGGTCCCGCCTCAGCC CCGCCCTGTGGGCCCTGAGGGTCTCGCGGCTGCGCGTGGTGGGGCTGCAGCCTCGCTCCG GCGCGGGCTCCGATGCCGGTATTGACTGGTAGGGCTAACCTGGTGTGTATAGCTACCACT GGTGCTTGCAAGCCGGTTTTTATTTAGTTGATCCTCTCTCCCTCTGAGGTTTGGGATCCC TGCAGTCTTCTCATCTGGTGATGGAGCTCTCAAGTCCTTCCAGAGAGGAGTGTCCCAGAC CCCAGGGCAGAGTAGGTATCATGGCCGCCAGCCTCATGGGATTGCTTCTACTTCAAGCAG CATCATGGGCATCAGGTGCCCGCCCCTGCAGCCCTAAAAGCTTTGGGTACAGCTCAGTGG TCTGTGTTTGCAATGCCACCTACTGTGATTCTCTTGACCCCCTGACCCTGCCTGACCCTG GCACCTTCAGCCGCTTTGAGAGCACACGCAGCGGGCGCCGAATGGAGCTGAGCCTGGGGA CCTTCCAGGCCAACCGCACAAGCAAAGGGCTTCTACTGACCCTGCAGCCAGATCAGAAGT TCCAGAAAGTGAAGGGATTTGGAGGGGCCATGACAGATGCTGCTGCTCTCAACATCCTTG CCCTGTCACCCCAGGCCCGGAATTTGCTACTCAAATCATACTTCTCTGAAGAAGGAATTG AATACAATATCATCCGGGTGCCTATGGCCAGCTGTGACTTCTCCATCCGCATCTACACCT ATGCCGACACCCCTGATGACTTCCAGTTGCTCAACTTCAGCCTCCCCGAGGAAGATGTCA AGCTCAAGATACCCCTGATTCACCAAGCCCTGAAGATGGCCCAGCGCCCTGTCTCCCTCT TTGCCAGTCCCTGGACATCACCCACTTGGCTCAAAACCAATGGGGCAGTGAATGGGAAGG GGACACTCAAGGGTCATCCGGGGGATCGCTACCACCAGACCTGGGCCAAATACTTTGTCA AGTTCCTGGATGCCTATGCTGAGCACAATTTACACTTCTGGGCAGTGACAGCCGAGAACG AGCCTTCTGCAGGGCTCTTTACTGGGTACCCCTTCCAGTGCCTGGGCTTCACCCCCGAAC ACCAGCGAGACTTCATTGCCCGTGACCTGGGTCCCACCCTGGCCAATAGTACACACCGCA ATGTCCGTCTGCTCATGCTGGATGACCAGCGCTTGCTGCTGCCCCACTGGGCCCAGGTGG TGCTGGCGGACCCAGAGGCGGCTAAGTACGTTCATGGCATTGCTGTACACTGGTACCTGG ACTTTCTGGCTCCAGCAAAAGCCACCCTGGGGGAGACACACCGCCTGTTCCCCAACACCA TGCTTTTTGCCTCAGAGGCCTGTGTGGGTTCCAAGTTCTGGGAGCAGAGCGTACGGCTGG GCTCCTGGGATCGAGGGGTGCAGTATAGCCACAGCATCATCACGAACCTCCTCTACCACG TGGTTGGCTGGACTGACTGGAACCTCGCCCTGAACCCCGAAGGGGGACCCAACTGGGTGC GCAACTTTGTCGACAGCCCCATCATCGTAGACATCTCCAAGGACACATTCTACAAACAGC CCATGTTTTACCACCTTGGCCACTTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGTGG GGCTGGCTGCCAGTGAGAAGAACAACTTGGACACGGTGGCACTGCTGCGCCCCGATGGCT CGGCCGTTGTGGTCGTGCTAAACCGCTCCTCGAAGGATGTGCCTCTCACCATCAAGGATC CGGCTCTGGGCTTCCTGGAAACGATCTCACCCGGCTACTCCATTCACACCTACCTGTGGC ATCGCAAGTGATGGAGCAGATACCGAAGCAGGCGCCTGGGCCCGGCATGGACATTAAAGA GACAGAGTCAGCTCAAAAAAAAAATGTGGCTGTAGAGGGTACAGCAGGGCCGAAGGGATC TTAGGTGACGTAAGCCTGGAGGCCGTGGTTTGGGTGACTCACTCTCCCCTCTAGTTGCTG CCAGGGGCTAGAGGCCCCTAGGGAAGGGATCAGGAAGCCCCGGTGGTCCCCCACCCCCAT GCCTGTGTGAGCGTGTGCTATGCGCTGGTTGCCTGTGGAAACTGGGCCCAGGCCCAGGGT GGTGAGCTCACTGTCTGCACAAACACGGGGGGTGGGGGGTGGGGGGAGAGGTTAAGGAAA GGAAGAGACTAGGAAAGCCGGACCCAAAACTGGGAACTGTTTGTCTTTCTTGAAGATGTA GAACCAGGCCCATACAGATGTCAGCACTAGGGCACAGGCAGCGAGAGAAGCCAAGCACCC GTGGGTAGACTCAAGCACCCAGGTGACCCCCTGCTTCGTACCAGCTAGGAAAAATGACCG CCTCTTGAAGGAGAGAATGTTTGATCCCCGTCATTGTGAGCAGGTTTATTCTGGGGGTGG CACCACATTTCCAGCCATACCAACAACGGGGAAACAGAGGGGCCCCTGGAATGCATGACA GTAAAAAAATCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2103-2251, - strand, RNAz p=0.996593 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2103-2251, - strand, RNAz p=0.996593 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-180, gnl|bosTau2|chr3 (9296920-9296748) | |
| 1-180, gnl|hg17|chr1 (152010158-152010532) | |
| 1-180, gnl|Hg17|chr1 (152010525-152010343) | |
| 1-180, gnl|mm7|chr3 (89323339-89322818) | |
| 1-180, gnl|oryCun1|scaffold_209205 (13740-13392) | |
| 1-180, gnl|panTro1|chr1 (134004027-134004401) | |
| 247-353, gnl|bosTau2|chr3 (9284027-9283922) | |
| 247-353, gnl|canFam2|chr7 (45291092-45290565) | |
| 247-353, gnl|dasNov1|scaffold_222701 (3973-3329) | |
| 247-353, gnl|hg17|chr1 (152001373-152001982) | |
| 247-353, gnl|Hg17|chr1 (152001827-152001706) | |
| 247-353, gnl|loxAfr1|scaffold_5844 (33017-32384) | |
| 247-353, gnl|mm7|chr3 (89329851-89329237) | |
| 247-353, gnl|Mm7|chr3 (89329375-89329502) | |
| 247-353, gnl|oryCun1|scaffold_199674 (83221-83838) | |
| 247-353, gnl|panTro1|chr1 (133995243-133995852) | |
| 247-353, gnl|rheMac2|chr1 (133768834-133769432) | |
| 433-628, gnl|bosTau2|chr3 (9283100-9282905) | |
| 433-628, gnl|Hg17|chr1 (152001017-152000827) | |
| 433-628, gnl|Mm7|chr3 (89330392-89330587) | |
| 904-1083, gnl|bosTau2|chr3 (9282097-9281918) | |
| 904-1083, gnl|Hg17|chr1 (151999898-151999719) | |
| 904-1083, gnl|Mm7|chr3 (89332197-89332376) | |
| 1319-1543, gnl|bosTau2|chr3 (9281040-9280816) | |
| 1319-1543, gnl|canFam2|chr7 (45293757-45293506) | |
| 1319-1543, gnl|danRer3|chr16 (8337104-8337348) | |
| 1319-1543, gnl|echTel1|scaffold_312049 (169885-169631) | |
| 1319-1543, gnl|fr1|chrUn (185466366-185466621) | |
| 1319-1543, gnl|galGal2|chrUn (151213010-151213263) | |
| 1319-1543, gnl|hg17|chr1 (151998417-151998670) | |
| 1319-1543, gnl|Hg17|chr1 (151998652-151998428) | |
| 1319-1543, gnl|loxAfr1|scaffold_5844 (35786-35532) | |
| 1319-1543, gnl|mm7|chr3 (89333873-89333619) | |
| 1319-1543, gnl|Mm7|chr3 (89333636-89333860) | |
| 1319-1543, gnl|monDom2|scaffold_59 (2495899-2495645) | |
| 1319-1543, gnl|oryCun1|scaffold_199674 (79723-79976) | |
| 1319-1543, gnl|panTro1|chr1 (133992069-133992322) | |
| 1319-1543, gnl|rheMac2|chr1 (133765881-133766134) | |
| 1319-1543, gnl|tetNig1|chr8 (8057582-8057351) | |
| 1544-1708, gnl|bosTau2|chr3 (9280130-9279966) | |
| 1544-1708, gnl|Mm7|chr3 (89334233-89334397) | |
| 1825-2592, gnl|bosTau2|chr3 (9279355-9278587) | |
| 1825-2592, gnl|Hg17|chr1 (151997338-151996585) | |
| 1825-2592, gnl|Mm7|chr3 (89334926-89335595) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-180, gnl|bosTau2|chr3 (9296920-9296748) | |
| 1-180, gnl|hg17|chr1 (152010158-152010532) | |
| 1-180, gnl|Hg17|chr1 (152010525-152010343) | |
| 1-180, gnl|mm7|chr3 (89323339-89322818) | |
| 1-180, gnl|oryCun1|scaffold_209205 (13740-13392) | |
| 1-180, gnl|panTro1|chr1 (134004027-134004401) | |
| 247-353, gnl|bosTau2|chr3 (9284027-9283922) | |
| 247-353, gnl|canFam2|chr7 (45291092-45290565) | |
| 247-353, gnl|dasNov1|scaffold_222701 (3973-3329) | |
| 247-353, gnl|hg17|chr1 (152001373-152001982) | |
| 247-353, gnl|Hg17|chr1 (152001827-152001706) | |
| 247-353, gnl|loxAfr1|scaffold_5844 (33017-32384) | |
| 247-353, gnl|mm7|chr3 (89329851-89329237) | |
| 247-353, gnl|Mm7|chr3 (89329375-89329502) | |
| 247-353, gnl|oryCun1|scaffold_199674 (83221-83838) | |
| 247-353, gnl|panTro1|chr1 (133995243-133995852) | |
| 247-353, gnl|rheMac2|chr1 (133768834-133769432) | |
| 433-628, gnl|bosTau2|chr3 (9283100-9282905) | |
| 433-628, gnl|Hg17|chr1 (152001017-152000827) | |
| 433-628, gnl|Mm7|chr3 (89330392-89330587) | |
| 904-1083, gnl|bosTau2|chr3 (9282097-9281918) | |
| 904-1083, gnl|Hg17|chr1 (151999898-151999719) | |
| 904-1083, gnl|Mm7|chr3 (89332197-89332376) | |
| 1319-1543, gnl|bosTau2|chr3 (9281040-9280816) | |
| 1319-1543, gnl|canFam2|chr7 (45293757-45293506) | |
| 1319-1543, gnl|danRer3|chr16 (8337104-8337348) | |
| 1319-1543, gnl|echTel1|scaffold_312049 (169885-169631) | |
| 1319-1543, gnl|fr1|chrUn (185466366-185466621) | |
| 1319-1543, gnl|galGal2|chrUn (151213010-151213263) | |
| 1319-1543, gnl|hg17|chr1 (151998417-151998670) | |
| 1319-1543, gnl|Hg17|chr1 (151998652-151998428) | |
| 1319-1543, gnl|loxAfr1|scaffold_5844 (35786-35532) | |
| 1319-1543, gnl|mm7|chr3 (89333873-89333619) | |
| 1319-1543, gnl|Mm7|chr3 (89333636-89333860) | |
| 1319-1543, gnl|monDom2|scaffold_59 (2495899-2495645) | |
| 1319-1543, gnl|oryCun1|scaffold_199674 (79723-79976) | |
| 1319-1543, gnl|panTro1|chr1 (133992069-133992322) | |
| 1319-1543, gnl|rheMac2|chr1 (133765881-133766134) | |
| 1319-1543, gnl|tetNig1|chr8 (8057582-8057351) | |
| 1544-1708, gnl|bosTau2|chr3 (9280130-9279966) | |
| 1544-1708, gnl|Mm7|chr3 (89334233-89334397) | |
| 1825-2592, gnl|bosTau2|chr3 (9279355-9278587) | |
| 1825-2592, gnl|Hg17|chr1 (151997338-151996585) | |
| 1825-2592, gnl|Mm7|chr3 (89334926-89335595) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.528611) | |
| clu (0.478583) | |
| amn (0.417711) | |
| ute (0.398353) | |
| fhi (0.339155) | |
| jca (0.22792) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| clu (0.478583) | |
| amn (0.417711) | |
| ute (0.398353) | |
| fhi (0.339155) | |
| jca (0.22792) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |