Non-Coding RNA Search

Ss1.1-Tra1-TCH01H110004.5

Sequence:


               
               CTGGCTCGGTTGACGCTGCAGCCCCCGCCGTAGTCGCCGCGGAGCCCACTGCCACCGCTT
CGGAGCAGAAGATGGCTGTGCCTCCTACGTATGCCGATCTTGGCAAGTCTGCCAGGGATG
TCTTCACCAAGGGCTATGGATTTGGCCTAATAAAACTTGATTTGAAAACAAAATCTGAGA
ATGGACTGGAATTTACAAGCTCAGGTTCAGCCAACACGGAGACCACCAAAGTGACGGGCA
GTCTGGAAACCAAGTACAGATGGACCGAATATGGTCTGACGTTTACAGAGAAGTGGAACA
CCGACAACACCCTGGGCACGGAGATTACCGTGGAAGATCAGCTTGCCCGTGGACTGAAGC
TGACCTTTGATTCATCCTTCTCACCGAACACTGGGAAAAAAAATGCCAAAATCAAGACCG
GGTATAAGCGGGAGCACGTCAACCTGGGCTGCGACGTGGATTTCGACATCGCTGGGCCGT
CCATCCGCGGTGCTCTCGTGCTGGGTTATGAGGGCTGGCTGGCGGGCTACCAGATGAATT
TTGAGACCGCCAAGTCCCGAGTGACCCAGAGCAACTTTGCAGTCGGCTACAAGACCGATG
AATTCCAGCTTCACACTAATGTAAATGATGGGACGGAGTTTGGTGGCTCCATTTATCAGA
AGGTGAACAAGAAGTTGGAGACCGCTGTTAATCTTGCCTGGACAGCAGGAAACAGCAACA
CACGCTTTGGAATAGCAGCCAAGTACCAGATCGACCCTGACGCCTGCTTCTCGGCTAAAG
TGAACAACTCCAGCCTGATAGGCTTAGGATACACTCAGACCCTAAAGCCAGGTATCAAAC
TGACGCTGTCCGCTCTGCTGGATGGCAAGAATGTCAACGCCGGTGGCCACAAGCTTGGTC
TAGGACTGGAGTTTCAAGCATAAACGAATACTGTACAATCGTTTAATTTTAAACTATTTT
GCAGCATAGCTACCTTCAGAATCTAGTGTACCTTTTACTGTTGTACGTCTGGGGATGCAA
GTATTGCTAAATATCCTGTTAGACTTCCAGGTTCAAGATGATTCAGCTTTAGGATGTTAC
CCTTTCAGAGGTACAGAAGAAACCCAATTCCAAAAAAAAAGGTCCTTTCAGCTGCAGACT
TGGGGGGAGCTTGCTGGACCCTCTCGAGATGTCCGGTTTCTTTTTGACCTAGAGATGGCT
GCAGGTGGAAGCGGATGCTTTGTAGGCACTTTGTAAATTCGTACTGAGTAAAGGAATGAA
ATTGTGACTTCCCGAGAACTGACCCTTGGTTTCCTACCCTGCGGGAGGAGAGGCGCGCTG
TTGGATGGCAGGCACAGACGCATCTGAAAGGGACTTTTTTAAAAAGGCAAACCTTCACGA
CCTGTTTTCACCCCCTTCCATCACCTCCTTTACACCAAAAGTAGTCTGCAGGGCATGGTA
GCTGTTTCTTTTGTGCCATTTTGGGGTGGAGGTGGTGGATGTGATGACGCCAATCATTCA
GGACTTAATTCCCTCTCGTGTTGTGGTTTTTGGCCCTTGCACCAGAGTATGAAATAGCTT
CTCAGTTCTCCAGCTGCAGGCTGGGGAGAGTCTCTGTGACTAATCACATGGTGACCACCC
TCGGAATCTAAATTGGATTTCTGTTGTATTCGCACCCGTTTATTTTTTAGCAGTTTAATG
GGTACATTTTAGAATCTTCCATTTTGTGTGGAATTAGATCCTCCCCTTCAAATGCTGTAA
TTAACATCACTTAAAATAAAACTTGAATAAAATATTGAAACCATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTCGGTTGACGCTGCAGCCCCCGCCGTAGTCGCCGCGGAGCCCACTGCCACCGCTT
CGGAGCAGAAGATGGCTGTGCCTCCTACGTATGCCGATCTTGGCAAGTCTGCCAGGGATG
TCTTCACCAAGGGCTATGGATTTGGCCTAATAAAACTTGATTTGAAAACAAAATCTGAGA
ATGGACTGGAATTTACAAGCTCAGGTTCAGCCAACACGGAGACCACCAAAGTGACGGGCA
GTCTGGAAACCAAGTACAGATGGACCGAATATGGTCTGACGTTTACAGAGAAGTGGAACA
CCGACAACACCCTGGGCACGGAGATTACCGTGGAAGATCAGCTTGCCCGTGGACTGAAGC
TGACCTTTGATTCATCCTTCTCACCGAACACTGGGAAAAAAAATGCCAAAATCAAGACCG
GGTATAAGCGGGAGCACGTCAACCTGGGCTGCGACGTGGATTTCGACATCGCTGGGCCGT
CCATCCGCGGTGCTCTCGTGCTGGGTTATGAGGGCTGGCTGGCGGGCTACCAGATGAATT
TTGAGACCGCCAAGTCCCGAGTGACCCAGAGCAACTTTGCAGTCGGCTACAAGACCGATG
AATTCCAGCTTCACACTAATGTAAATGATGGGACGGAGTTTGGTGGCTCCATTTATCAGA
AGGTGAACAAGAAGTTGGAGACCGCTGTTAATCTTGCCTGGACAGCAGGAAACAGCAACA
CACGCTTTGGAATAGCAGCCAAGTACCAGATCGACCCTGACGCCTGCTTCTCGGCTAAAG
TGAACAACTCCAGCCTGATAGGCTTAGGATACACTCAGACCCTAAAGCCAGGTATCAAAC
TGACGCTGTCCGCTCTGCTGGATGGCAAGAATGTCAACGCCGGTGGCCACAAGCTTGGTC
TAGGACTGGAGTTTCAAGCATAAACGAATACTGTACAATCGTTTAATTTTAAACTATTTT
GCAGCATAGCTACCTTCAGAATCTAGTGTACCTTTTACTGTTGTACGTCTGGGGATGCAA
GTATTGCTAAATATCCTGTTAGACTTCCAGGTTCAAGATGATTCAGCTTTAGGATGTTAC
CCTTTCAGAGGTACAGAAGAAACCCAATTCCAAAAAAAAAGGTCCTTTCAGCTGCAGACT
TGGGGGGAGCTTGCTGGACCCTCTCGAGATGTCCGGTTTCTTTTTGACCTAGAGATGGCT
GCAGGTGGAAGCGGATGCTTTGTAGGCACTTTGTAAATTCGTACTGAGTAAAGGAATGAA
ATTGTGACTTCCCGAGAACTGACCCTTGGTTTCCTACCCTGCGGGAGGAGAGGCGCGCTG
TTGGATGGCAGGCACAGACGCATCTGAAAGGGACTTTTTTAAAAAGGCAAACCTTCACGA
CCTGTTTTCACCCCCTTCCATCACCTCCTTTACACCAAAAGTAGTCTGCAGGGCATGGTA
GCTGTTTCTTTTGTGCCATTTTGGGGTGGAGGTGGTGGATGTGATGACGCCAATCATTCA
GGACTTAATTCCCTCTCGTGTTGTGGTTTTTGGCCCTTGCACCAGAGTATGAAATAGCTT
CTCAGTTCTCCAGCTGCAGGCTGGGGAGAGTCTCTGTGACTAATCACATGGTGACCACCC
TCGGAATCTAAATTGGATTTCTGTTGTATTCGCACCCGTTTATTTTTTAGCAGTTTAATG
GGTACATTTTAGAATCTTCCATTTTGTGTGGAATTAGATCCTCCCCTTCAAATGCTGTAA
TTAACATCACTTAAAATAAAACTTGAATAAAATATTGAAACCATAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47522750|ref|NP_999125.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522750|ref|NP_999125.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               135-1756, + strand, RNAz p=0.947951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               135-1756, + strand, RNAz p=0.947951

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               96-923, gnl|bosTau2|chr10 (13352975-13352149)
               

               
               96-923, gnl|Hg17|chr14 (99500643-99501468)
               

               
               96-923, gnl|Mm7|chr13 (17397377-17396550)
               


               
               1601-1792, gnl|bosTau2|chr11 (30756690-30756886)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-923, gnl|bosTau2|chr10 (13352975-13352149)
               

               
               96-923, gnl|Hg17|chr14 (99500643-99501468)
               

               
               96-923, gnl|Mm7|chr13 (17397377-17396550)
               


               
               1601-1792, gnl|bosTau2|chr11 (30756690-30756886)

Expressed library(ies): 59 entry(ies)

More info

Expressed library(ies): 59 entry(ies)

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               hea (1.63599)
               

               
               ssp (1.3552)
               

               
               nms (1.28315)
               

               
               sme (1.22175)
               

               
               ldo (1.16403)
               

               
               ece (1.14653)
               

               
               che (0.954198)
               

               
               cst (0.840218)
               

               
               nje (0.8296)
               

               
               ste (0.811249)
               

               
               duo (0.691204)
               

               
               nco (0.646935)
               

               
               mas (0.630915)
               

               
               col (0.585023)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               mcp (0.511945)
               

               
               cki (0.495704)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               cbr (0.383926)
               

               
               sin (0.349895)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 59 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.63599)
               

               
               ssp (1.3552)
               

               
               nms (1.28315)
               

               
               sme (1.22175)
               

               
               ldo (1.16403)
               

               
               ece (1.14653)
               

               
               che (0.954198)
               

               
               cst (0.840218)
               

               
               nje (0.8296)
               

               
               ste (0.811249)
               

               
               duo (0.691204)
               

               
               nco (0.646935)
               

               
               mas (0.630915)
               

               
               col (0.585023)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               mcp (0.511945)
               

               
               cki (0.495704)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               cbr (0.383926)
               

               
               sin (0.349895)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	96-923, gnl\|bosTau2\|chr10 (13352975-13352149)
	96-923, gnl\|Hg17\|chr14 (99500643-99501468)
	96-923, gnl\|Mm7\|chr13 (17397377-17396550)

	1601-1792, gnl\|bosTau2\|chr11 (30756690-30756886)

	hea (1.63599)
	ssp (1.3552)
	nms (1.28315)
	sme (1.22175)
	ldo (1.16403)
	ece (1.14653)
	che (0.954198)
	cst (0.840218)
	nje (0.8296)
	ste (0.811249)
	duo (0.691204)
	nco (0.646935)
	mas (0.630915)
	col (0.585023)
	fce (0.543183)
	ill (0.526778)
	mcp (0.511945)
	cki (0.495704)
	tbr (0.462535)
	mgp (0.461361)
	hyp (0.42851)
	amn (0.417711)
	cbr (0.383926)
	sin (0.349895)
	ecc (0.345105)
	eye (0.341006)
	fhi (0.339155)
	pty (0.285429)
	csk (0.281492)
	nca (0.273748)
	sug (0.254582)
	ese (0.253004)
	bla (0.248694)
	eep (0.245128)
	clu (0.239292)
	pgl (0.236967)
	med (0.232504)
	cbl (0.229595)
	jej (0.197844)
	fcc (0.197785)
	nlu (0.191681)
	sto (0.179824)
	ton (0.1755)
	csp (0.161186)
	fco (0.157208)
	cli (0.152812)
	eli (0.151814)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)