Ss1.1-Tra1-TCH01H110037.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGTTCCCGCACTTCAATGTCTTTGGGGTGGCGCCCCCACCCGCGCCCCCGCCCGCGT CCCGCCGCCAGAGTTAGCAGGACATCAGTATGAGCTGGTCACCTTCCCTGACAACCCAAA CATGTGGGGCCTGGGAAATGAAAGAACGGCTTGGGACAGGGGGATTTGGGAACGTCATCC GATGGCACAATCAGGAAACGGGCGAGCAGATCGCCATCAAGCAGTGCCGGCAGGAGCTCA GTCCCCGGAACCGTGAGCGCTGGTGCCTGGAGATCCAGATCATGAGGAGGCTGAACCACC CCAATGTGGTGGCCGCCCGGGATGTCCCTGAGGGGATGCAGAACCTGGCTCCCAACGACT TGCCCCTTCTGGCCATGGAGTACTGCCAGGGCGGGGATCTGCGCAAGTACTTGAATCAGT TCGAGAACTGTTGTGGCCTGCGGGAAGGAGCCATCCTCACCTTGCTGAGTGACATCGCCT CTGCACTTAGATACCTTCACGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACA TCGTCCTGCAGCAAGGCGAACAGAGATTAATACACAAAATTATTGACCTCGGGTATGCCA AGGAGCTGGACCAGGGCAGCCTCTGTACCTCCTTTGTGGGGACCCTGCAGTACCTGGCCC CGGAGCTGCTGGAGCAGCAGAAGTACACAGTGACAGTTGACTACTGGAGCTTCGGCACCT TGGCCTTTGAGTGCATCACCGGCTTCCGGCCCTTCCTGCCCAACTGGCAGCCGGTGCAGT GGCACTCCAAAGCCCGGCAGAAGAGCGAGATGGACATCGTGGTGAGCGAGGACCTGAATG GCACCGTGAAGTTCTCCAGCTCATTACCCTACCCCAACAACCTCAACAGTGTCCTGGCCC AGCGGCTGGAGAAGTGGCTGCAGCTGATGCTGATGTGGCACCCCCGGCAGAGGGGCACCG ATCCCACGTACGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAACCTTGAAGC TGGTTCATATCTTGAACATGGTCACAGGCACCATTCATACCTACCCCGTGACCGAGGACG AGAGCCTGCAGAGCTTGAAGGCCCGGATCCGGCAGGACACAGGCATCCTCGAGGAGGCCC AGGAGCTGCTGCAGGAGGCGGGTCTGGCGCTGATCCCCGACAAGCCCGCGGCTCAGTGCA TCTCCGATGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGTTCCCGCACTTCAATGTCTTTGGGGTGGCGCCCCCACCCGCGCCCCCGCCCGCGT CCCGCCGCCAGAGTTAGCAGGACATCAGTATGAGCTGGTCACCTTCCCTGACAACCCAAA CATGTGGGGCCTGGGAAATGAAAGAACGGCTTGGGACAGGGGGATTTGGGAACGTCATCC GATGGCACAATCAGGAAACGGGCGAGCAGATCGCCATCAAGCAGTGCCGGCAGGAGCTCA GTCCCCGGAACCGTGAGCGCTGGTGCCTGGAGATCCAGATCATGAGGAGGCTGAACCACC CCAATGTGGTGGCCGCCCGGGATGTCCCTGAGGGGATGCAGAACCTGGCTCCCAACGACT TGCCCCTTCTGGCCATGGAGTACTGCCAGGGCGGGGATCTGCGCAAGTACTTGAATCAGT TCGAGAACTGTTGTGGCCTGCGGGAAGGAGCCATCCTCACCTTGCTGAGTGACATCGCCT CTGCACTTAGATACCTTCACGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACA TCGTCCTGCAGCAAGGCGAACAGAGATTAATACACAAAATTATTGACCTCGGGTATGCCA AGGAGCTGGACCAGGGCAGCCTCTGTACCTCCTTTGTGGGGACCCTGCAGTACCTGGCCC CGGAGCTGCTGGAGCAGCAGAAGTACACAGTGACAGTTGACTACTGGAGCTTCGGCACCT TGGCCTTTGAGTGCATCACCGGCTTCCGGCCCTTCCTGCCCAACTGGCAGCCGGTGCAGT GGCACTCCAAAGCCCGGCAGAAGAGCGAGATGGACATCGTGGTGAGCGAGGACCTGAATG GCACCGTGAAGTTCTCCAGCTCATTACCCTACCCCAACAACCTCAACAGTGTCCTGGCCC AGCGGCTGGAGAAGTGGCTGCAGCTGATGCTGATGTGGCACCCCCGGCAGAGGGGCACCG ATCCCACGTACGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAACCTTGAAGC TGGTTCATATCTTGAACATGGTCACAGGCACCATTCATACCTACCCCGTGACCGAGGACG AGAGCCTGCAGAGCTTGAAGGCCCGGATCCGGCAGGACACAGGCATCCTCGAGGAGGCCC AGGAGCTGCTGCAGGAGGCGGGTCTGGCGCTGATCCCCGACAAGCCCGCGGCTCAGTGCA TCTCCGATGGCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 36-195, gnl|bosTau2|chr27 (23602856-23603016) | |
| 36-195, gnl|Hg17|chr8 (42248736-42248881) | |
| 36-195, gnl|Mm7|chr8 (21491544-21491398) | |
| 288-407, gnl|bosTau2|chr27 (23619497-23619616) | |
| 288-407, gnl|Hg17|chr8 (42266829-42266948) | |
| 288-407, gnl|Mm7|chr8 (21479251-21479132) | |
| 656-782, gnl|bosTau2|chr27 (23638149-23638275) | |
| 656-782, gnl|canFam2|chr16 (26333816-26333657) | |
| 656-782, gnl|canFam2|chr28 (15984925-15985044) | |
| 656-782, gnl|danRer3|chr13 (26065733-26065582) | |
| 656-782, gnl|danRer3|chr13 (26065605-26065725) | |
| 656-782, gnl|echTel1|scaffold_101316 (7889-8043) | |
| 656-782, gnl|echTel1|scaffold_58238 (92-179) | |
| 656-782, gnl|fr1|chrUn (1443107-1442976) | |
| 656-782, gnl|fr1|chrUn (16535500-16535620) | |
| 656-782, gnl|galGal2|chr6 (8653601-8653482) | |
| 656-782, gnl|galGal2|chrUn (904784-904930) | |
| 656-782, gnl|hg17|chr10 (101968765-101968885) | |
| 656-782, gnl|hg17|chr8 (42285564-42285715) | |
| 656-782, gnl|Hg17|chr8 (42285575-42285701) | |
| 656-782, gnl|loxAfr1|scaffold_32444 (1254-1408) | |
| 656-782, gnl|loxAfr1|scaffold_6535 (14561-14453) | |
| 656-782, gnl|mm7|chr19 (43991086-43991205) | |
| 656-782, gnl|mm7|chr8 (21464246-21464094) | |
| 656-782, gnl|Mm7|chr8 (21464232-21464106) | |
| 656-782, gnl|monDom2|scaffold_1 (79712551-79712407) | |
| 656-782, gnl|monDom2|scaffold_41 (10443419-10443538) | |
| 656-782, gnl|oryCun1|scaffold_165494 (13504-13623) | |
| 656-782, gnl|oryCun1|scaffold_188018 (62097-62240) | |
| 656-782, gnl|panTro1|chr7 (43705522-43705673) | |
| 656-782, gnl|panTro1|chr8 (103711494-103711609) | |
| 656-782, gnl|rheMac2|chr8 (42889536-42889687) | |
| 656-782, gnl|rheMac2|chr9 (99821158-99821278) | |
| 656-782, gnl|rn3|chr1 (249392536-249392417) | |
| 656-782, gnl|rn3|chr16 (73836234-73836380) | |
| 656-782, gnl|tetNig1|chr12 (6004598-6004467) | |
| 656-782, gnl|tetNig1|chr17 (4583334-4583214) | |
| 656-782, gnl|xenTro1|scaffold_106 (374241-374109) | |
| 656-782, gnl|xenTro1|scaffold_444 (1005960-1006078) | |
| 1014-1212, gnl|bosTau2|chr27 (23643203-23643401) | |
| 1014-1212, gnl|Hg17|chr8 (42293379-42293577) | |
| 1014-1212, gnl|Mm7|chr8 (21457842-21457642) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-195, gnl|bosTau2|chr27 (23602856-23603016) | |
| 36-195, gnl|Hg17|chr8 (42248736-42248881) | |
| 36-195, gnl|Mm7|chr8 (21491544-21491398) | |
| 288-407, gnl|bosTau2|chr27 (23619497-23619616) | |
| 288-407, gnl|Hg17|chr8 (42266829-42266948) | |
| 288-407, gnl|Mm7|chr8 (21479251-21479132) | |
| 656-782, gnl|bosTau2|chr27 (23638149-23638275) | |
| 656-782, gnl|canFam2|chr16 (26333816-26333657) | |
| 656-782, gnl|canFam2|chr28 (15984925-15985044) | |
| 656-782, gnl|danRer3|chr13 (26065733-26065582) | |
| 656-782, gnl|danRer3|chr13 (26065605-26065725) | |
| 656-782, gnl|echTel1|scaffold_101316 (7889-8043) | |
| 656-782, gnl|echTel1|scaffold_58238 (92-179) | |
| 656-782, gnl|fr1|chrUn (1443107-1442976) | |
| 656-782, gnl|fr1|chrUn (16535500-16535620) | |
| 656-782, gnl|galGal2|chr6 (8653601-8653482) | |
| 656-782, gnl|galGal2|chrUn (904784-904930) | |
| 656-782, gnl|hg17|chr10 (101968765-101968885) | |
| 656-782, gnl|hg17|chr8 (42285564-42285715) | |
| 656-782, gnl|Hg17|chr8 (42285575-42285701) | |
| 656-782, gnl|loxAfr1|scaffold_32444 (1254-1408) | |
| 656-782, gnl|loxAfr1|scaffold_6535 (14561-14453) | |
| 656-782, gnl|mm7|chr19 (43991086-43991205) | |
| 656-782, gnl|mm7|chr8 (21464246-21464094) | |
| 656-782, gnl|Mm7|chr8 (21464232-21464106) | |
| 656-782, gnl|monDom2|scaffold_1 (79712551-79712407) | |
| 656-782, gnl|monDom2|scaffold_41 (10443419-10443538) | |
| 656-782, gnl|oryCun1|scaffold_165494 (13504-13623) | |
| 656-782, gnl|oryCun1|scaffold_188018 (62097-62240) | |
| 656-782, gnl|panTro1|chr7 (43705522-43705673) | |
| 656-782, gnl|panTro1|chr8 (103711494-103711609) | |
| 656-782, gnl|rheMac2|chr8 (42889536-42889687) | |
| 656-782, gnl|rheMac2|chr9 (99821158-99821278) | |
| 656-782, gnl|rn3|chr1 (249392536-249392417) | |
| 656-782, gnl|rn3|chr16 (73836234-73836380) | |
| 656-782, gnl|tetNig1|chr12 (6004598-6004467) | |
| 656-782, gnl|tetNig1|chr17 (4583334-4583214) | |
| 656-782, gnl|xenTro1|scaffold_106 (374241-374109) | |
| 656-782, gnl|xenTro1|scaffold_444 (1005960-1006078) | |
| 1014-1212, gnl|bosTau2|chr27 (23643203-23643401) | |
| 1014-1212, gnl|Hg17|chr8 (42293379-42293577) | |
| 1014-1212, gnl|Mm7|chr8 (21457842-21457642) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) |