Ss1.1-Tra1-TCH01H110059.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGCCGGAGCCAGAGGTGGCTCGGCTACAGAGCCGCGGGAAGGGCCGCGTCTCTGTCAG CTCTCCTCGCGGTAACTGGGTCTCCTTGCGTCTCCAGTCCGGGACGGAAGCTGCGGCCGT CGCGGGCGGCCGGATCCGCGTCCCGCCTCAGCGCCTGGAGGACATGCGGGAGAGAGAATG AGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGGATGTGGTGGTACAGTGGGAGCT ATTCTGACATGTCCACTGGAAGTTGTAAAAACACGGCTGCAGTCATCTTCTGTGACACTT TATATTTCTGAAGTTCACCTGAACACCATGGCTGGAGCCAGTGTCAACCGAGTAGTGTCT CCTGGACCTCTCCATTGCTTAAAAGTGATCTTGGAAAAAGAAGGACCTCGTTCCTTGTTT AGAGGATTAGGCCCCAATTTAGTGGGGGTGGCCCCTTCCAGAGCAATATATTTTGCTGCT TATTCAAACTGCAAGGAAAAGTTGAATGGTTTATTTGATCCTGATTCTACCCAGGTACAC ATGATTTCAGCTGCAATGGCAGGTTTTACCGCAATCACAGCGACCAACCCCATTTGGCTT ATAAAGACTCGGTTACAACTTGATGCAAGAAATCGTGGGGAAAAGCGAATGGGCGCTTTT GAATGTGTCCGTAAAGTGTATCAGACAGATGGACTTAGAGGATTTTATAGGGGCATGTCT GCTTCGTATGCTGGCATATCAGAGACTGTTATCCATTTCGTTATTTATGAAAGTATTAAG CAAAAACTGCTGGAATATAAGATGGCTTCTACAATGGAAACTGAAGAAGAGTCTGTAAAA GAAGCATCAGATTTTGTGGGGATGATGCTAGCTGCTGCCACCTCAAAAACGTGTGCCACA ACTATAGCATATCCACATGAAGTTGTAAGAACAAGACTACGTGAAGAGGGAACAAAATAC AGATCTTTTTTTCAGACATTATCTTTGCTTGTTCAAGAAGAAGGCTATGGGTCTCTTTAC CGTGGTCTGACAACTCATCTGGTGAGACAGATTCCAAACACAGCCATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGCCGGAGCCAGAGGTGGCTCGGCTACAGAGCCGCGGGAAGGGCCGCGTCTCTGTCAG CTCTCCTCGCGGTAACTGGGTCTCCTTGCGTCTCCAGTCCGGGACGGAAGCTGCGGCCGT CGCGGGCGGCCGGATCCGCGTCCCGCCTCAGCGCCTGGAGGACATGCGGGAGAGAGAATG AGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGGATGTGGTGGTACAGTGGGAGCT ATTCTGACATGTCCACTGGAAGTTGTAAAAACACGGCTGCAGTCATCTTCTGTGACACTT TATATTTCTGAAGTTCACCTGAACACCATGGCTGGAGCCAGTGTCAACCGAGTAGTGTCT CCTGGACCTCTCCATTGCTTAAAAGTGATCTTGGAAAAAGAAGGACCTCGTTCCTTGTTT AGAGGATTAGGCCCCAATTTAGTGGGGGTGGCCCCTTCCAGAGCAATATATTTTGCTGCT TATTCAAACTGCAAGGAAAAGTTGAATGGTTTATTTGATCCTGATTCTACCCAGGTACAC ATGATTTCAGCTGCAATGGCAGGTTTTACCGCAATCACAGCGACCAACCCCATTTGGCTT ATAAAGACTCGGTTACAACTTGATGCAAGAAATCGTGGGGAAAAGCGAATGGGCGCTTTT GAATGTGTCCGTAAAGTGTATCAGACAGATGGACTTAGAGGATTTTATAGGGGCATGTCT GCTTCGTATGCTGGCATATCAGAGACTGTTATCCATTTCGTTATTTATGAAAGTATTAAG CAAAAACTGCTGGAATATAAGATGGCTTCTACAATGGAAACTGAAGAAGAGTCTGTAAAA GAAGCATCAGATTTTGTGGGGATGATGCTAGCTGCTGCCACCTCAAAAACGTGTGCCACA ACTATAGCATATCCACATGAAGTTGTAAGAACAAGACTACGTGAAGAGGGAACAAAATAC AGATCTTTTTTTCAGACATTATCTTTGCTTGTTCAAGAAGAAGGCTATGGGTCTCTTTAC CGTGGTCTGACAACTCATCTGGTGAGACAGATTCCAAACACAGCCATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 919-1037, + strand, RNAz p=0.9457 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 919-1037, + strand, RNAz p=0.9457 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 218-388, gnl|bosTau2|chr1 (80274810-80274641) | |
| 218-388, gnl|canFam2|chr23 (39982541-39982664) | |
| 218-388, gnl|danRer3|chr2 (31381024-31380901) | |
| 218-388, gnl|dasNov1|scaffold_150509 (1335-1203) | |
| 218-388, gnl|echTel1|scaffold_49250 (762-639) | |
| 218-388, gnl|fr1|chrUn (134153490-134153613) | |
| 218-388, gnl|galGal2|chr9 (6865954-6866077) | |
| 218-388, gnl|hg17|chr3 (142158067-142158190) | |
| 218-388, gnl|Hg17|chr3 (142158066-142158235) | |
| 218-388, gnl|loxAfr1|scaffold_21059 (40024-40147) | |
| 218-388, gnl|mm7|chr9 (96741884-96741761) | |
| 218-388, gnl|Mm7|chr9 (96741883-96741714) | |
| 218-388, gnl|monDom2|scaffold_24 (37443271-37443394) | |
| 218-388, gnl|oryCun1|scaffold_160834 (2884-2761) | |
| 218-388, gnl|panTro1|chr2 (144693159-144693282) | |
| 218-388, gnl|rheMac2|chr2 (146870947-146870824) | |
| 218-388, gnl|rn3|chr8 (102198423-102198300) | |
| 218-388, gnl|tetNig1|chr16 (7417305-7417428) | |
| 218-388, gnl|xenTro1|scaffold_880 (33165-33042) | |
| 460-564, gnl|bosTau2|chr1 (80267465-80267361) | |
| 460-564, gnl|canFam2|chr23 (39990413-39990525) | |
| 460-564, gnl|danRer3|chr2 (31372732-31372620) | |
| 460-564, gnl|dasNov1|scaffold_24917 (15985-15873) | |
| 460-564, gnl|echTel1|scaffold_191236 (6123-6011) | |
| 460-564, gnl|fr1|chrUn (134155427-134155539) | |
| 460-564, gnl|galGal2|chr9 (6874578-6874690) | |
| 460-564, gnl|hg17|chr3 (142164666-142164778) | |
| 460-564, gnl|Hg17|chr3 (142164665-142164769) | |
| 460-564, gnl|loxAfr1|scaffold_21059 (49838-49950) | |
| 460-564, gnl|mm7|chr9 (96734823-96734711) | |
| 460-564, gnl|Mm7|chr9 (96734822-96734718) | |
| 460-564, gnl|monDom2|scaffold_24 (37454405-37454517) | |
| 460-564, gnl|oryCun1|scaffold_206101 (24622-24510) | |
| 460-564, gnl|panTro1|chr2 (144699731-144699843) | |
| 460-564, gnl|rheMac2|chr2 (146864349-146864237) | |
| 460-564, gnl|rn3|chr8 (102192501-102192389) | |
| 460-564, gnl|tetNig1|chr16 (7418723-7418828) | |
| 460-564, gnl|xenTro1|scaffold_880 (30457-30347) | |
| 628-917, gnl|bosTau2|chr1 (80257226-80256937) | |
| 628-917, gnl|canFam2|chr23 (40000589-40000916) | |
| 628-917, gnl|danRer3|chr2 (31363036-31362707) | |
| 628-917, gnl|dasNov1|scaffold_24917 (5656-5329) | |
| 628-917, gnl|echTel1|scaffold_317498 (39586-39260) | |
| 628-917, gnl|fr1|chrUn (134158935-134159230) | |
| 628-917, gnl|galGal2|chr9 (6883939-6884271) | |
| 628-917, gnl|hg17|chr3 (142175232-142175558) | |
| 628-917, gnl|Hg17|chr3 (142175254-142175543) | |
| 628-917, gnl|loxAfr1|scaffold_27072 (24317-23994) | |
| 628-917, gnl|mm7|chr9 (96722150-96721828) | |
| 628-917, gnl|Mm7|chr9 (96722127-96721838) | |
| 628-917, gnl|monDom2|scaffold_24 (37469208-37469533) | |
| 628-917, gnl|oryCun1|scaffold_206101 (14082-13736) | |
| 628-917, gnl|panTro1|chr2 (144710713-144711039) | |
| 628-917, gnl|rheMac2|chr2 (146853576-146853250) | |
| 628-917, gnl|rn3|chr8 (102181730-102181406) | |
| 628-917, gnl|tetNig1|chr16 (7420235-7420557) | |
| 628-917, gnl|xenTro1|scaffold_880 (17991-17674) | |
| 919-1068, gnl|bosTau2|chr1 (80255720-80255571) | |
| 919-1068, gnl|canFam2|chr23 (40003046-40003257) | |
| 919-1068, gnl|danRer3|chr2 (31362023-31361814) | |
| 919-1068, gnl|dasNov1|scaffold_24917 (3519-3306) | |
| 919-1068, gnl|echTel1|scaffold_317498 (36832-36619) | |
| 919-1068, gnl|fr1|chrUn (134159324-134159535) | |
| 919-1068, gnl|galGal2|chr9 (6885089-6885302) | |
| 919-1068, gnl|hg17|chr3 (142177780-142177993) | |
| 919-1068, gnl|Hg17|chr3 (142177799-142177948) | |
| 919-1068, gnl|loxAfr1|scaffold_1521 (39805-39997) | |
| 919-1068, gnl|mm7|chr9 (96720904-96720691) | |
| 919-1068, gnl|Mm7|chr9 (96720883-96720734) | |
| 919-1068, gnl|monDom2|scaffold_24 (37470831-37471044) | |
| 919-1068, gnl|oryCun1|scaffold_206101 (11157-10944) | |
| 919-1068, gnl|panTro1|chr2 (144713652-144713865) | |
| 919-1068, gnl|rheMac2|chr2 (146851041-146850858) | |
| 919-1068, gnl|rn3|chr8 (102180928-102180715) | |
| 919-1068, gnl|tetNig1|chr16 (7420648-7420844) | |
| 919-1068, gnl|xenTro1|scaffold_880 (16294-16081) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 218-388, gnl|bosTau2|chr1 (80274810-80274641) | |
| 218-388, gnl|canFam2|chr23 (39982541-39982664) | |
| 218-388, gnl|danRer3|chr2 (31381024-31380901) | |
| 218-388, gnl|dasNov1|scaffold_150509 (1335-1203) | |
| 218-388, gnl|echTel1|scaffold_49250 (762-639) | |
| 218-388, gnl|fr1|chrUn (134153490-134153613) | |
| 218-388, gnl|galGal2|chr9 (6865954-6866077) | |
| 218-388, gnl|hg17|chr3 (142158067-142158190) | |
| 218-388, gnl|Hg17|chr3 (142158066-142158235) | |
| 218-388, gnl|loxAfr1|scaffold_21059 (40024-40147) | |
| 218-388, gnl|mm7|chr9 (96741884-96741761) | |
| 218-388, gnl|Mm7|chr9 (96741883-96741714) | |
| 218-388, gnl|monDom2|scaffold_24 (37443271-37443394) | |
| 218-388, gnl|oryCun1|scaffold_160834 (2884-2761) | |
| 218-388, gnl|panTro1|chr2 (144693159-144693282) | |
| 218-388, gnl|rheMac2|chr2 (146870947-146870824) | |
| 218-388, gnl|rn3|chr8 (102198423-102198300) | |
| 218-388, gnl|tetNig1|chr16 (7417305-7417428) | |
| 218-388, gnl|xenTro1|scaffold_880 (33165-33042) | |
| 460-564, gnl|bosTau2|chr1 (80267465-80267361) | |
| 460-564, gnl|canFam2|chr23 (39990413-39990525) | |
| 460-564, gnl|danRer3|chr2 (31372732-31372620) | |
| 460-564, gnl|dasNov1|scaffold_24917 (15985-15873) | |
| 460-564, gnl|echTel1|scaffold_191236 (6123-6011) | |
| 460-564, gnl|fr1|chrUn (134155427-134155539) | |
| 460-564, gnl|galGal2|chr9 (6874578-6874690) | |
| 460-564, gnl|hg17|chr3 (142164666-142164778) | |
| 460-564, gnl|Hg17|chr3 (142164665-142164769) | |
| 460-564, gnl|loxAfr1|scaffold_21059 (49838-49950) | |
| 460-564, gnl|mm7|chr9 (96734823-96734711) | |
| 460-564, gnl|Mm7|chr9 (96734822-96734718) | |
| 460-564, gnl|monDom2|scaffold_24 (37454405-37454517) | |
| 460-564, gnl|oryCun1|scaffold_206101 (24622-24510) | |
| 460-564, gnl|panTro1|chr2 (144699731-144699843) | |
| 460-564, gnl|rheMac2|chr2 (146864349-146864237) | |
| 460-564, gnl|rn3|chr8 (102192501-102192389) | |
| 460-564, gnl|tetNig1|chr16 (7418723-7418828) | |
| 460-564, gnl|xenTro1|scaffold_880 (30457-30347) | |
| 628-917, gnl|bosTau2|chr1 (80257226-80256937) | |
| 628-917, gnl|canFam2|chr23 (40000589-40000916) | |
| 628-917, gnl|danRer3|chr2 (31363036-31362707) | |
| 628-917, gnl|dasNov1|scaffold_24917 (5656-5329) | |
| 628-917, gnl|echTel1|scaffold_317498 (39586-39260) | |
| 628-917, gnl|fr1|chrUn (134158935-134159230) | |
| 628-917, gnl|galGal2|chr9 (6883939-6884271) | |
| 628-917, gnl|hg17|chr3 (142175232-142175558) | |
| 628-917, gnl|Hg17|chr3 (142175254-142175543) | |
| 628-917, gnl|loxAfr1|scaffold_27072 (24317-23994) | |
| 628-917, gnl|mm7|chr9 (96722150-96721828) | |
| 628-917, gnl|Mm7|chr9 (96722127-96721838) | |
| 628-917, gnl|monDom2|scaffold_24 (37469208-37469533) | |
| 628-917, gnl|oryCun1|scaffold_206101 (14082-13736) | |
| 628-917, gnl|panTro1|chr2 (144710713-144711039) | |
| 628-917, gnl|rheMac2|chr2 (146853576-146853250) | |
| 628-917, gnl|rn3|chr8 (102181730-102181406) | |
| 628-917, gnl|tetNig1|chr16 (7420235-7420557) | |
| 628-917, gnl|xenTro1|scaffold_880 (17991-17674) | |
| 919-1068, gnl|bosTau2|chr1 (80255720-80255571) | |
| 919-1068, gnl|canFam2|chr23 (40003046-40003257) | |
| 919-1068, gnl|danRer3|chr2 (31362023-31361814) | |
| 919-1068, gnl|dasNov1|scaffold_24917 (3519-3306) | |
| 919-1068, gnl|echTel1|scaffold_317498 (36832-36619) | |
| 919-1068, gnl|fr1|chrUn (134159324-134159535) | |
| 919-1068, gnl|galGal2|chr9 (6885089-6885302) | |
| 919-1068, gnl|hg17|chr3 (142177780-142177993) | |
| 919-1068, gnl|Hg17|chr3 (142177799-142177948) | |
| 919-1068, gnl|loxAfr1|scaffold_1521 (39805-39997) | |
| 919-1068, gnl|mm7|chr9 (96720904-96720691) | |
| 919-1068, gnl|Mm7|chr9 (96720883-96720734) | |
| 919-1068, gnl|monDom2|scaffold_24 (37470831-37471044) | |
| 919-1068, gnl|oryCun1|scaffold_206101 (11157-10944) | |
| 919-1068, gnl|panTro1|chr2 (144713652-144713865) | |
| 919-1068, gnl|rheMac2|chr2 (146851041-146850858) | |
| 919-1068, gnl|rn3|chr8 (102180928-102180715) | |
| 919-1068, gnl|tetNig1|chr16 (7420648-7420844) | |
| 919-1068, gnl|xenTro1|scaffold_880 (16294-16081) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cte (0.29274) | |
| fty (0.17584) | |
| tbr (0.154178) | |
| nca (0.136874) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| fty (0.17584) | |
| tbr (0.154178) | |
| nca (0.136874) |