Ss1.1-Tra1-TCH01H110066.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGTGTGCTCTGTGTCACTGTGGATTGGAGTTGAAACAGCTTGACGAGCGTCATTCAGG AGCTGGATGGCGTGGGACATGTGCAACCAGGACTCTGTATGGACTGACATCGAGTGTGCT GCTCTGGTTGGTGAAGACCAGCCTCTTTGCCCAGATCTTCCTGAACTTGACCTTTCTGAA CTAGACGTGAACGACTTGGATACAGACAGCTTTCTGGGTGGACTCAAGTGGTGCAGTGAC CAATCAGAAATAATATCCAATCAGTACAACAATGAGCCTTCAAACATATTTGAGAAGATA GATGAAGAGAATGAGGCAAACTTGCTAGCAGTTCTCACAGAGACGCTGGACAGTCTCCCT GTGGATGAAGACGGATTGCCCTCATTTGATGCACTGACAGATGGAGATGTGACCACTGAG AATGAGGCTAGTCCTTCCTCCATGCCTGACGGCACCCCTCCGCCTCAGGAGGCAGAAGAG CCGTCTCTACTTAAGAAGCTCTTACTGGCACCAGCCAACACTCAGCTAAGTTATAATGAA TGCAGTGGTCTCAGTACCCAGAACCATGCAAACCACAATCACAGGATCAGAACAAACCCT GCAGTTGTTAAGACCGAGAATTCATGGAGCAATAAAGCGAAGAGCATTTGTCAACAGCAA AAGCCACAAAGACGTCCATGCTCCGAGCTTCTCAAGTATCTGACCACAAATGATGACCCT CCTCACACCAAACCCACAGAGACCCGAAACAGTAGCAGAGACAAGTGCACCTCCAAAAAG AAGGCCCACACACAATCGCAGTCGCAACATTTACAAGCTGCAGAGTGGTAGCCCTTGATC CCTGTTTTGAACCATGATTATTTCATACAGCCAAACCAACATCTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGTGTGCTCTGTGTCACTGTGGATTGGAGTTGAAACAGCTTGACGAGCGTCATTCAGG AGCTGGATGGCGTGGGACATGTGCAACCAGGACTCTGTATGGACTGACATCGAGTGTGCT GCTCTGGTTGGTGAAGACCAGCCTCTTTGCCCAGATCTTCCTGAACTTGACCTTTCTGAA CTAGACGTGAACGACTTGGATACAGACAGCTTTCTGGGTGGACTCAAGTGGTGCAGTGAC CAATCAGAAATAATATCCAATCAGTACAACAATGAGCCTTCAAACATATTTGAGAAGATA GATGAAGAGAATGAGGCAAACTTGCTAGCAGTTCTCACAGAGACGCTGGACAGTCTCCCT GTGGATGAAGACGGATTGCCCTCATTTGATGCACTGACAGATGGAGATGTGACCACTGAG AATGAGGCTAGTCCTTCCTCCATGCCTGACGGCACCCCTCCGCCTCAGGAGGCAGAAGAG CCGTCTCTACTTAAGAAGCTCTTACTGGCACCAGCCAACACTCAGCTAAGTTATAATGAA TGCAGTGGTCTCAGTACCCAGAACCATGCAAACCACAATCACAGGATCAGAACAAACCCT GCAGTTGTTAAGACCGAGAATTCATGGAGCAATAAAGCGAAGAGCATTTGTCAACAGCAA AAGCCACAAAGACGTCCATGCTCCGAGCTTCTCAAGTATCTGACCACAAATGATGACCCT CCTCACACCAAACCCACAGAGACCCGAAACAGTAGCAGAGACAAGTGCACCTCCAAAAAG AAGGCCCACACACAATCGCAGTCGCAACATTTACAAGCTGCAGAGTGGTAGCCCTTGATC CCTGTTTTGAACCATGATTATTTCATACAGCCAAACCAACATCTTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 326-506, - strand, RNAz p=0.937638 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 326-506, - strand, RNAz p=0.937638 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-121, gnl|bosTau2|chr6 (21042432-21042311) | |
| 1-121, gnl|canFam2|chr3 (89008619-89008483) | |
| 1-121, gnl|danRer3|chr18 (19245120-19245254) | |
| 1-121, gnl|dasNov1|scaffold_53496 (11896-12033) | |
| 1-121, gnl|echTel1|scaffold_279773 (18006-18122) | |
| 1-121, gnl|galGal2|chr4 (74334406-74334271) | |
| 1-121, gnl|hg17|chr4 (23567789-23567932) | |
| 1-121, gnl|Hg17|chr4 (23567915-23567788) | |
| 1-121, gnl|mm7|chr5 (50926878-50927015) | |
| 1-121, gnl|Mm7|chr5 (50926998-50926877) | |
| 1-121, gnl|monDom2|scaffold_10 (15130350-15130211) | |
| 1-121, gnl|oryCun1|scaffold_205786 (222656-222793) | |
| 1-121, gnl|panTro1|chr3 (24111495-24111638) | |
| 1-121, gnl|rheMac2|chr5 (18645677-18645820) | |
| 1-121, gnl|rn3|chr14 (64280603-64280466) | |
| 1-121, gnl|tetNig1|chrUn_random (56796921-56797119) | |
| 1-121, gnl|xenTro1|scaffold_54 (1261922-1261798) | |
| 289-506, gnl|bosTau2|chr6 (20977512-20977296) | |
| 289-506, gnl|Hg17|chr4 (23509652-23509434) | |
| 289-506, gnl|Mm7|chr5 (50871385-50871169) | |
| 604-817, gnl|bosTau2|chr6 (20974518-20974305) | |
| 604-817, gnl|Hg17|chr4 (23506505-23506292) | |
| 604-817, gnl|Mm7|chr5 (50867964-50867751) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-121, gnl|bosTau2|chr6 (21042432-21042311) | |
| 1-121, gnl|canFam2|chr3 (89008619-89008483) | |
| 1-121, gnl|danRer3|chr18 (19245120-19245254) | |
| 1-121, gnl|dasNov1|scaffold_53496 (11896-12033) | |
| 1-121, gnl|echTel1|scaffold_279773 (18006-18122) | |
| 1-121, gnl|galGal2|chr4 (74334406-74334271) | |
| 1-121, gnl|hg17|chr4 (23567789-23567932) | |
| 1-121, gnl|Hg17|chr4 (23567915-23567788) | |
| 1-121, gnl|mm7|chr5 (50926878-50927015) | |
| 1-121, gnl|Mm7|chr5 (50926998-50926877) | |
| 1-121, gnl|monDom2|scaffold_10 (15130350-15130211) | |
| 1-121, gnl|oryCun1|scaffold_205786 (222656-222793) | |
| 1-121, gnl|panTro1|chr3 (24111495-24111638) | |
| 1-121, gnl|rheMac2|chr5 (18645677-18645820) | |
| 1-121, gnl|rn3|chr14 (64280603-64280466) | |
| 1-121, gnl|tetNig1|chrUn_random (56796921-56797119) | |
| 1-121, gnl|xenTro1|scaffold_54 (1261922-1261798) | |
| 289-506, gnl|bosTau2|chr6 (20977512-20977296) | |
| 289-506, gnl|Hg17|chr4 (23509652-23509434) | |
| 289-506, gnl|Mm7|chr5 (50871385-50871169) | |
| 604-817, gnl|bosTau2|chr6 (20974518-20974305) | |
| 604-817, gnl|Hg17|chr4 (23506505-23506292) | |
| 604-817, gnl|Mm7|chr5 (50867964-50867751) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.129735) |