Ss1.1-Tra1-TCH01H110101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGATGTCTTCTCCGGCCAAACACCAGGAACAGCAGCTGAAGGATACGTGTTTTGGGCA CTAAGGATGCAGCAATGAGCAAAACCAGACACAACATCTCTTCTTTTTAACGAAGTGCAT GTTCATCATCTTTCATAGAACTCACTAGACTTGGCCATGATCGCTTCCTCTTTTCAAACT ACGTTAGCAGTTTTTGCCCTAATTATCCTGCATGTCCGTGCACTGGATACTTTTAAGGCT GCTGTATATGAACATGCTGTCATCCTGCCAAATGACACAAAAACACCTGTTTCTTGGGAT GATGCTTTGCTCCTCATGAACAAGAATATGGATATTCTGGAGAGAGCAATTAAGCAGGCA GCTGAGCAGGGTGCTCAAATCATTGTGACTCCAGAAGATGCACTTTATGGATGGAAATTT ACCAGGGAAACCATTTTTCCCTATCTGGAGGATGTCCCAGATCCTCAGAAGAACTGGATT CCATGTCAAGACCCCCACAGATTTGGTCACACACCAGTGCAAGTAAGACTCAGCTGCCTG GCCAAGAATAACTCTATCTATGTCTTGGCGAATATTGGAGACAAAAAGCCCTGTAATTCC CATGATTCCAAATGTCCTCCTAATGGCTATTATCAATACAACACCAACGTGGTATATGAT TCAGAGGGAAAGCTGGTGGCACGTTACCATAAGTACCACCTCTACCATGAGCTTCAGTTT GATGTCCCTGAAAAGCCGGAGGTGGTGACTTTCAACACCCCTTTTGGAAAGTTCGGCATT TTCACGTGCTTCGATATTCTCTTCCGTGATCCTGCTGTGACGCTGGTGCAAGATTTCCAC GTGGACACCATATTGTTTCCGGCAGCTTGGATGAATGTGTTGCCCCTTTTGACAGCTATT GAATTCCATTCGGCTTGGGCAATGGGCATGAGAGTTAATCTTCTTGCAGCCAACGTACAT CATGTCCGCCTAAATATGACAGGCAGTGGTATCTATGCTCCACATTCTCCCAAAGTATAC CATTATGACATGGAAACGGACTCGGGAAAAATCCTCCTTGCGGAGGTGGATGCGCATCCC CGCACCTCCCCGACCTACCCAACAGCCGTGAACTGGGGTGCCTACACCCTAAGCATCCAG CCGTTCCCAATACTGCAAAACTCCTTCAGGGGATTCATTTCCAGGGACGAGTTCCACTTC ACAGAACTCTCTGAAAGTGCAGGAAACCTTACGGTCTGTCATAAAGAGCTCTGCTGTCAT TTAAGCTACAGAATGCTAGCGAAGGAGGAGAATGAAGTATATGTTCTAGGAGCTTTTACA GGACTTCATGGCCGAAGGAGAAGAGAGTATTGGCAGGTATGCACAATGTTGAAATGCAAA TCTACTAATCTGACAACTTGCGGACAGCCTGTAGAAACTGCTCTGACGAGATTTGAGTTG TTCTCTCTAAGTGGTACATTTGGAACAGAGTATGTTTTTCCCGAAGTGCTCCTTACTAAA ATCAATCTGGCACCTGGAAAATTTGAGGTACTGAAAGATGGGCGTTTGGTAAACAAGAAC GGAACATCTGAGCCTGTCCTAGGAGTGTCACTGTTTGGGAGATGGTACATTAGGGATGTA CCACTTTCCATCTCGGGAGGACCAGCACCTCAGCAAAAAATGTACCTGATAATTTCCGCA TTATTAATGATCATAGCTTTGCAAAATATTGTCATGGTATAGCTAGGGTCCCTGCTTTGT CATATTCATTGTTGCTCCCAAGTTTACTAAGAAACTTTGTATGGCTAGATCAATTCTACA GACCAGTGATTTCCAAATATATATATTTTTTCTCATCAAGGATGATTTGTACGTCTTATG ATCATTTTACCCCTTTTTGGGCTGCTTTGAAATATTGCAGTATTGCATAATGCTGTACTT GATATTTGGGTCAGATAAATGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGATGTCTTCTCCGGCCAAACACCAGGAACAGCAGCTGAAGGATACGTGTTTTGGGCA CTAAGGATGCAGCAATGAGCAAAACCAGACACAACATCTCTTCTTTTTAACGAAGTGCAT GTTCATCATCTTTCATAGAACTCACTAGACTTGGCCATGATCGCTTCCTCTTTTCAAACT ACGTTAGCAGTTTTTGCCCTAATTATCCTGCATGTCCGTGCACTGGATACTTTTAAGGCT GCTGTATATGAACATGCTGTCATCCTGCCAAATGACACAAAAACACCTGTTTCTTGGGAT GATGCTTTGCTCCTCATGAACAAGAATATGGATATTCTGGAGAGAGCAATTAAGCAGGCA GCTGAGCAGGGTGCTCAAATCATTGTGACTCCAGAAGATGCACTTTATGGATGGAAATTT ACCAGGGAAACCATTTTTCCCTATCTGGAGGATGTCCCAGATCCTCAGAAGAACTGGATT CCATGTCAAGACCCCCACAGATTTGGTCACACACCAGTGCAAGTAAGACTCAGCTGCCTG GCCAAGAATAACTCTATCTATGTCTTGGCGAATATTGGAGACAAAAAGCCCTGTAATTCC CATGATTCCAAATGTCCTCCTAATGGCTATTATCAATACAACACCAACGTGGTATATGAT TCAGAGGGAAAGCTGGTGGCACGTTACCATAAGTACCACCTCTACCATGAGCTTCAGTTT GATGTCCCTGAAAAGCCGGAGGTGGTGACTTTCAACACCCCTTTTGGAAAGTTCGGCATT TTCACGTGCTTCGATATTCTCTTCCGTGATCCTGCTGTGACGCTGGTGCAAGATTTCCAC GTGGACACCATATTGTTTCCGGCAGCTTGGATGAATGTGTTGCCCCTTTTGACAGCTATT GAATTCCATTCGGCTTGGGCAATGGGCATGAGAGTTAATCTTCTTGCAGCCAACGTACAT CATGTCCGCCTAAATATGACAGGCAGTGGTATCTATGCTCCACATTCTCCCAAAGTATAC CATTATGACATGGAAACGGACTCGGGAAAAATCCTCCTTGCGGAGGTGGATGCGCATCCC CGCACCTCCCCGACCTACCCAACAGCCGTGAACTGGGGTGCCTACACCCTAAGCATCCAG CCGTTCCCAATACTGCAAAACTCCTTCAGGGGATTCATTTCCAGGGACGAGTTCCACTTC ACAGAACTCTCTGAAAGTGCAGGAAACCTTACGGTCTGTCATAAAGAGCTCTGCTGTCAT TTAAGCTACAGAATGCTAGCGAAGGAGGAGAATGAAGTATATGTTCTAGGAGCTTTTACA GGACTTCATGGCCGAAGGAGAAGAGAGTATTGGCAGGTATGCACAATGTTGAAATGCAAA TCTACTAATCTGACAACTTGCGGACAGCCTGTAGAAACTGCTCTGACGAGATTTGAGTTG TTCTCTCTAAGTGGTACATTTGGAACAGAGTATGTTTTTCCCGAAGTGCTCCTTACTAAA ATCAATCTGGCACCTGGAAAATTTGAGGTACTGAAAGATGGGCGTTTGGTAAACAAGAAC GGAACATCTGAGCCTGTCCTAGGAGTGTCACTGTTTGGGAGATGGTACATTAGGGATGTA CCACTTTCCATCTCGGGAGGACCAGCACCTCAGCAAAAAATGTACCTGATAATTTCCGCA TTATTAATGATCATAGCTTTGCAAAATATTGTCATGGTATAGCTAGGGTCCCTGCTTTGT CATATTCATTGTTGCTCCCAAGTTTACTAAGAAACTTTGTATGGCTAGATCAATTCTACA GACCAGTGATTTCCAAATATATATATTTTTTCTCATCAAGGATGATTTGTACGTCTTATG ATCATTTTACCCCTTTTTGGGCTGCTTTGAAATATTGCAGTATTGCATAATGCTGTACTT GATATTTGGGTCAGATAAATGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 253-370, - strand, RNAz p=0.594317 | |
| 979-1097, - strand, RNAz p=0.98548 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 253-370, - strand, RNAz p=0.594317 | |
| 979-1097, - strand, RNAz p=0.98548 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 137-370, gnl|bosTau2|chr9 (41017047-41016813) | |
| 137-370, gnl|Hg17|chr6 (133120736-133120502) | |
| 499-693, gnl|bosTau2|chr9 (41002351-41002157) | |
| 499-693, gnl|canFam2|chr1 (28724020-28724222) | |
| 499-693, gnl|dasNov1|scaffold_7211 (45670-45470) | |
| 499-693, gnl|echTel1|scaffold_287816 (1156-955) | |
| 499-693, gnl|galGal2|chr3 (55722171-55721969) | |
| 499-693, gnl|hg17|chr6 (133118668-133118916) | |
| 499-693, gnl|Hg17|chr6 (133118869-133118675) | |
| 499-693, gnl|loxAfr1|scaffold_73131 (1329-1528) | |
| 499-693, gnl|mm7|chr10 (23649531-23649288) | |
| 499-693, gnl|Mm7|chr10 (23607487-23607681) | |
| 499-693, gnl|monDom2|scaffold_0 (78579202-78578956) | |
| 499-693, gnl|oryCun1|scaffold_211682 (42414-42169) | |
| 499-693, gnl|panTro1|chr5 (135763958-135764205) | |
| 499-693, gnl|rheMac2|chr4 (131138755-131138507) | |
| 499-693, gnl|rn3|chr1 (22132147-22132354) | |
| 499-693, gnl|xenTro1|scaffold_481 (114709-114939) | |
| 979-1366, gnl|bosTau2|chr9 (40997054-40996667) | |
| 979-1366, gnl|canFam2|chr1 (28722220-28722499) | |
| 979-1366, gnl|dasNov1|scaffold_7211 (1523-1243) | |
| 979-1366, gnl|echTel1|scaffold_120338 (445-717) | |
| 979-1366, gnl|galGal2|chr3 (55725068-55724815) | |
| 979-1366, gnl|hg17|chr6 (133113947-133114226) | |
| 979-1366, gnl|Hg17|chr6 (133114354-133113967) | |
| 979-1366, gnl|loxAfr1|scaffold_116203 (3117-3387) | |
| 979-1366, gnl|mm7|chr10 (23651884-23651623) | |
| 979-1366, gnl|Mm7|chr10 (23616939-23617286) | |
| 979-1366, gnl|monDom2|scaffold_0 (78582414-78582142) | |
| 979-1366, gnl|oryCun1|scaffold_211682 (45502-45222) | |
| 979-1366, gnl|panTro1|chr5 (135759226-135759505) | |
| 979-1366, gnl|rheMac2|chr4 (131143720-131143441) | |
| 979-1366, gnl|rn3|chr1 (22094615-22094874) | |
| 979-1366, gnl|xenTro1|scaffold_481 (110499-110752) | |
| 1523-1944, gnl|bosTau2|chr9 (40989096-40988686) | |
| 1523-1944, gnl|Hg17|chr6 (133107328-133106885) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-370, gnl|bosTau2|chr9 (41017047-41016813) | |
| 137-370, gnl|Hg17|chr6 (133120736-133120502) | |
| 499-693, gnl|bosTau2|chr9 (41002351-41002157) | |
| 499-693, gnl|canFam2|chr1 (28724020-28724222) | |
| 499-693, gnl|dasNov1|scaffold_7211 (45670-45470) | |
| 499-693, gnl|echTel1|scaffold_287816 (1156-955) | |
| 499-693, gnl|galGal2|chr3 (55722171-55721969) | |
| 499-693, gnl|hg17|chr6 (133118668-133118916) | |
| 499-693, gnl|Hg17|chr6 (133118869-133118675) | |
| 499-693, gnl|loxAfr1|scaffold_73131 (1329-1528) | |
| 499-693, gnl|mm7|chr10 (23649531-23649288) | |
| 499-693, gnl|Mm7|chr10 (23607487-23607681) | |
| 499-693, gnl|monDom2|scaffold_0 (78579202-78578956) | |
| 499-693, gnl|oryCun1|scaffold_211682 (42414-42169) | |
| 499-693, gnl|panTro1|chr5 (135763958-135764205) | |
| 499-693, gnl|rheMac2|chr4 (131138755-131138507) | |
| 499-693, gnl|rn3|chr1 (22132147-22132354) | |
| 499-693, gnl|xenTro1|scaffold_481 (114709-114939) | |
| 979-1366, gnl|bosTau2|chr9 (40997054-40996667) | |
| 979-1366, gnl|canFam2|chr1 (28722220-28722499) | |
| 979-1366, gnl|dasNov1|scaffold_7211 (1523-1243) | |
| 979-1366, gnl|echTel1|scaffold_120338 (445-717) | |
| 979-1366, gnl|galGal2|chr3 (55725068-55724815) | |
| 979-1366, gnl|hg17|chr6 (133113947-133114226) | |
| 979-1366, gnl|Hg17|chr6 (133114354-133113967) | |
| 979-1366, gnl|loxAfr1|scaffold_116203 (3117-3387) | |
| 979-1366, gnl|mm7|chr10 (23651884-23651623) | |
| 979-1366, gnl|Mm7|chr10 (23616939-23617286) | |
| 979-1366, gnl|monDom2|scaffold_0 (78582414-78582142) | |
| 979-1366, gnl|oryCun1|scaffold_211682 (45502-45222) | |
| 979-1366, gnl|panTro1|chr5 (135759226-135759505) | |
| 979-1366, gnl|rheMac2|chr4 (131143720-131143441) | |
| 979-1366, gnl|rn3|chr1 (22094615-22094874) | |
| 979-1366, gnl|xenTro1|scaffold_481 (110499-110752) | |
| 1523-1944, gnl|bosTau2|chr9 (40989096-40988686) | |
| 1523-1944, gnl|Hg17|chr6 (133107328-133106885) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| tra (0.984737) | |
| clu (0.478583) | |
| cmu (0.372787) | |
| cbl (0.229595) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cje (0.165235) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| jca (0.11396) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.984737) | |
| clu (0.478583) | |
| cmu (0.372787) | |
| cbl (0.229595) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cje (0.165235) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| jca (0.11396) |