Non-Coding RNA Search

Ss1.1-Tra1-TCH01H110102.5

Sequence:


               
               TTTAAGGTATTTTGAATGCCAAAGTGCTTGAGAACGTTGCCAGGTTAAAAATCACTTAAT
AGATCTCGGGACATAGGTTATGCAGAGTAGGATGACCAGGAGTAGCGTTATTACTCTTGA
GACCACTTGGAGAAAGGGAGCTAGAGTTTGCTTCAGTGTCAGGGTTGGGGTGGTTGAGCT
GCAGAGGCACCACGGAGCTCCGTGTCCCACGGACCTGTGCTCGGCGAAGGTTAAATTCAG
GAGAGGAAGTCCTCTCCCTTGGTTAATGGCAGACAGGGTGGGCAGGGGCCCCACGCCTTA
CAAATTCACCTCTGCTGAGTTGATATTTTGTTCGCTCTGTTCTTGTGCTTCACCTGTCCT
CAACAGCTTTGGACTGCCTCTCCTCGTGAAACAAAACCATATGTAAGCCTCAGTTAATGA
GTTTGCACAATCTTGTATCTGTACAGGAAACCCATCCTGTCTCCTAGTGTGACTGATTGT
CCATGTATGACAGCATTCTGCAAAACTGATTAAAAAGGGAGAGCAGTTGAAGTCACTGGG
TTTTCATGTTTTCATCATCTCTTTTGTATTCGGAAGCACTTCTGAAATTTTTTTGGACTT
CTCAGCTATTACTCATATTCTCCATGAATTCGTACTTGTCTTTTTCATCTGAACATTTAA
GGGTATTTGTTACGTGCAATATAGGAAGGCATTAGAATCATTGTCCAGCAGTTGCTAACA
AGACGGTAAACATTTACTGTTTTAACACCGTTCCTGTCGGACGCCTGTATGTGGTAGCCT
TAGTTCTGAGAGCAGATGTCCTAATCACAGTATTCACCGAAACCCTTATTAATCTTTTCA
GCCGAGGGACATTTCTGTGAGCCAGGAGCCTTTGTCATAGGGGCAAGCTCCCCCCACACG
TGGTGGAATAGCCCTTTCCCCATACTAATTGCACTTCATCTGGAAGGAAGCATTTAAAAG
TTGGCTTAGGGCTCTGTTTTCGTTCCGTCTGTTCAGTATTAAAATTAATGCAGTGACTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAGGTATTTTGAATGCCAAAGTGCTTGAGAACGTTGCCAGGTTAAAAATCACTTAAT
AGATCTCGGGACATAGGTTATGCAGAGTAGGATGACCAGGAGTAGCGTTATTACTCTTGA
GACCACTTGGAGAAAGGGAGCTAGAGTTTGCTTCAGTGTCAGGGTTGGGGTGGTTGAGCT
GCAGAGGCACCACGGAGCTCCGTGTCCCACGGACCTGTGCTCGGCGAAGGTTAAATTCAG
GAGAGGAAGTCCTCTCCCTTGGTTAATGGCAGACAGGGTGGGCAGGGGCCCCACGCCTTA
CAAATTCACCTCTGCTGAGTTGATATTTTGTTCGCTCTGTTCTTGTGCTTCACCTGTCCT
CAACAGCTTTGGACTGCCTCTCCTCGTGAAACAAAACCATATGTAAGCCTCAGTTAATGA
GTTTGCACAATCTTGTATCTGTACAGGAAACCCATCCTGTCTCCTAGTGTGACTGATTGT
CCATGTATGACAGCATTCTGCAAAACTGATTAAAAAGGGAGAGCAGTTGAAGTCACTGGG
TTTTCATGTTTTCATCATCTCTTTTGTATTCGGAAGCACTTCTGAAATTTTTTTGGACTT
CTCAGCTATTACTCATATTCTCCATGAATTCGTACTTGTCTTTTTCATCTGAACATTTAA
GGGTATTTGTTACGTGCAATATAGGAAGGCATTAGAATCATTGTCCAGCAGTTGCTAACA
AGACGGTAAACATTTACTGTTTTAACACCGTTCCTGTCGGACGCCTGTATGTGGTAGCCT
TAGTTCTGAGAGCAGATGTCCTAATCACAGTATTCACCGAAACCCTTATTAATCTTTTCA
GCCGAGGGACATTTCTGTGAGCCAGGAGCCTTTGTCATAGGGGCAAGCTCCCCCCACACG
TGGTGGAATAGCCCTTTCCCCATACTAATTGCACTTCATCTGGAAGGAAGCATTTAAAAG
TTGGCTTAGGGCTCTGTTTTCGTTCCGTCTGTTCAGTATTAAAATTAATGCAGTGACTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-329, - strand, RNAz p=0.781158

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-329, - strand, RNAz p=0.781158

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               17-1019, gnl|bosTau2|chr11 (76865880-76866889)
               

               
               17-1019, gnl|Hg17|chr9 (125208523-125209807)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1019, gnl|bosTau2|chr11 (76865880-76866889)
               

               
               17-1019, gnl|Hg17|chr9 (125208523-125209807)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.248694)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)

	17-1019, gnl\|bosTau2\|chr11 (76865880-76866889)
	17-1019, gnl\|Hg17\|chr9 (125208523-125209807)