Ss1.1-Tra1-TCH01H120011.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCATCTACTCTCCAGCCGGCCGCCCGCCGCCGCCGCCGCCTCCTCCTCCGCGCCGCCCAG CCAAGCCCGCGCCGCCACCATGAGCCAGGCCTACTCGTCCAGCCAGCGCGTGTCCTCTTA CCGCCGCACCTTCGGCGGGGCCCCGAGCTTCCCGCTCGGCTCGCCGCTGAGCTCGCCCGT GTTCCCGCGCGCGGGCTTCGGCACCAAGGGCTCCTCGAGCTCGGTGACCTCCCGAGTGTA CCAGGTGTCGCGCACGTCGGGCGGGGCCGGGGGCCTGGGGCCGCTGCGGGCCAGCCGGCT GGGGGCCACCCGCGTGCCCTCCTCATCCTACGGCGCAGGCGAGCTGCTGGACTTCTCGCT GGCAGACGCCGTCAACCAGGAGTTCCTGACCACGCGCACCAACGAGAAAGTGGAGCTGCA GGAGCTCAATGATCGCTTTGCCAACTACATCGAGAAGGTGCGCTTCCTGGAGCAGCAGAA CGCGGCGCTCGCCGCCGAGGTGAACCGGCTCAAGGGCCGCGAGCCGACCCGGGTGGCCGA GATCTACGAGGAGGAGCTGCGCGAGCTGCGGCGCCAGGTGGAGGTGCTCACCAACCAGCG CGCCCGCGTCGACGTCGAGCGGGACAACCTGCTGGACGACCTGCAGCGGCTCAAGGCCAA GCTGCAAGAGGAAATTCAGCTGAAAGAAGAAGCCGAGAACAATTTGGCTGCCTTCCGAGC GGATGTGGATGCAGCCACTCTAGCTCGAATTGACCTGGAGCGCAGGATCGAATCTCTCAA CGAGGAAATCGCGTTCCTTAAGAAAGTACACGAAGAGGAGATCCGAGAACTGCAGGCCCA GCTTCAGGAACAACAGGTCCAGGTGGAGATGGACATGTCCAAGCCAGACCTCACCGCCGC CCTCAGGGACATCCGGGCTCAGTACGAGACCATCGCGGCTAAGAACATCTCGGAAGCCGA AGAGTGGTACAAGTCAAAGGTGTCCGACCTGACCCAGGCAGCCAATAAGAACAATGATGC ACTGCGCCAGGCCAAGCAGGAGATGATGGAGTATCGCCATCAGATCCAGTCCTACACCTG CGAGATCGATGCCCTCAAGGGCACTAACGATTCCCTGATGAGGCAGATGCGGGAGCTGGA GGACCGCTTTGCTAGTGAGGCCAGCGGCTACCAGGACAACATCGCACGCCTGGAGGAGGA GATCCGACACCTCAAGGATGAGATGGCCCGCCACCTGCGCGAGTACCAGGACCTGCTCAA TGTCAAGATGGCCCTGGATGTGGAGATTGCCACCTACCGGAAGCTGCTGGAGGGCGAGGA GAGCCGGATCAACCTCCCTATCCAGACCTTCTCTGCCCTCAACTTCCGAGAAACAAGCCC TGAGCAAAGGGGTTCTGAGGTCCATACCAAGAAGACAGTGATGATCAAGACCATCGAGAC CCGGGATGGGGAGGTCGTCAGTGAGGCCACACAGCAGCAACACGAGGTGCTCTAAAGCCA GAGACCCTTCTGCCACCAGAGACCGTCCTCAGCCCTACCCTCACTGCCTCCTGAAGCCAG CCTTCTTCCATCCCAGGGCACCACACCCAGCCACAGTGCTCCCCTCACAGCCTCCCACCC CTGCTCACTGACCACCCGTCATGGTCCCCATAGGGGACATGGCCCATTCCCGCCTGGGCA CAAGGAGCCCCCCCCCCCCCCACTGTGTGAGGTCTGGATGTTGGAAGTGAGTGAGCCTGG CCCTTGGCCGCCCTTGGAGTGTGCTGGGCAGGGCTGGGATGGAGCCGAGCACAGCAGTGA CCCTGCCCCTCCCACCTCTGTGGCCTCAGGCTCTAGCCTCTGGCTTTGGAGAAGGCTCCA GAGCAGGGTGTAGGGACCCCGCAGAGTCAAGTTCAAATCCCGCGGACCTCCCCGCCCCCC CTTTCCCCAGTCTGAGTCAGAGAGAAAGGGCAGAGTCTTCAGCAAGCCAGGCAGGTAACT GGGGACCTAGCCACCACCTCCCATGGAGACCGGAGGGCTTGAAATTGACCCATGGTCCCT TACTTTCCCAGGGTGGGCTTAGAAAGCAGGGGCTGCAAGAGGGAATCCCCGAAGGTGCCA GATGTGGGAGCAGGAGAGTCAGAAGGAGACAGGGTGGGCGAGACGCTGGAGAGGAGAGAG GAGAGGAGAGAGCAGAGAGCGGTCTCAGGCAGGTGGCAGGGGTGCGCACCTCCCCGGACC TGCCCCTCCCCCACTGCAGGGGCTCTGGACAGAAACAATAAAAAGATAAGCACAAGCCTA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCATCTACTCTCCAGCCGGCCGCCCGCCGCCGCCGCCGCCTCCTCCTCCGCGCCGCCCAG CCAAGCCCGCGCCGCCACCATGAGCCAGGCCTACTCGTCCAGCCAGCGCGTGTCCTCTTA CCGCCGCACCTTCGGCGGGGCCCCGAGCTTCCCGCTCGGCTCGCCGCTGAGCTCGCCCGT GTTCCCGCGCGCGGGCTTCGGCACCAAGGGCTCCTCGAGCTCGGTGACCTCCCGAGTGTA CCAGGTGTCGCGCACGTCGGGCGGGGCCGGGGGCCTGGGGCCGCTGCGGGCCAGCCGGCT GGGGGCCACCCGCGTGCCCTCCTCATCCTACGGCGCAGGCGAGCTGCTGGACTTCTCGCT GGCAGACGCCGTCAACCAGGAGTTCCTGACCACGCGCACCAACGAGAAAGTGGAGCTGCA GGAGCTCAATGATCGCTTTGCCAACTACATCGAGAAGGTGCGCTTCCTGGAGCAGCAGAA CGCGGCGCTCGCCGCCGAGGTGAACCGGCTCAAGGGCCGCGAGCCGACCCGGGTGGCCGA GATCTACGAGGAGGAGCTGCGCGAGCTGCGGCGCCAGGTGGAGGTGCTCACCAACCAGCG CGCCCGCGTCGACGTCGAGCGGGACAACCTGCTGGACGACCTGCAGCGGCTCAAGGCCAA GCTGCAAGAGGAAATTCAGCTGAAAGAAGAAGCCGAGAACAATTTGGCTGCCTTCCGAGC GGATGTGGATGCAGCCACTCTAGCTCGAATTGACCTGGAGCGCAGGATCGAATCTCTCAA CGAGGAAATCGCGTTCCTTAAGAAAGTACACGAAGAGGAGATCCGAGAACTGCAGGCCCA GCTTCAGGAACAACAGGTCCAGGTGGAGATGGACATGTCCAAGCCAGACCTCACCGCCGC CCTCAGGGACATCCGGGCTCAGTACGAGACCATCGCGGCTAAGAACATCTCGGAAGCCGA AGAGTGGTACAAGTCAAAGGTGTCCGACCTGACCCAGGCAGCCAATAAGAACAATGATGC ACTGCGCCAGGCCAAGCAGGAGATGATGGAGTATCGCCATCAGATCCAGTCCTACACCTG CGAGATCGATGCCCTCAAGGGCACTAACGATTCCCTGATGAGGCAGATGCGGGAGCTGGA GGACCGCTTTGCTAGTGAGGCCAGCGGCTACCAGGACAACATCGCACGCCTGGAGGAGGA GATCCGACACCTCAAGGATGAGATGGCCCGCCACCTGCGCGAGTACCAGGACCTGCTCAA TGTCAAGATGGCCCTGGATGTGGAGATTGCCACCTACCGGAAGCTGCTGGAGGGCGAGGA GAGCCGGATCAACCTCCCTATCCAGACCTTCTCTGCCCTCAACTTCCGAGAAACAAGCCC TGAGCAAAGGGGTTCTGAGGTCCATACCAAGAAGACAGTGATGATCAAGACCATCGAGAC CCGGGATGGGGAGGTCGTCAGTGAGGCCACACAGCAGCAACACGAGGTGCTCTAAAGCCA GAGACCCTTCTGCCACCAGAGACCGTCCTCAGCCCTACCCTCACTGCCTCCTGAAGCCAG CCTTCTTCCATCCCAGGGCACCACACCCAGCCACAGTGCTCCCCTCACAGCCTCCCACCC CTGCTCACTGACCACCCGTCATGGTCCCCATAGGGGACATGGCCCATTCCCGCCTGGGCA CAAGGAGCCCCCCCCCCCCCCACTGTGTGAGGTCTGGATGTTGGAAGTGAGTGAGCCTGG CCCTTGGCCGCCCTTGGAGTGTGCTGGGCAGGGCTGGGATGGAGCCGAGCACAGCAGTGA CCCTGCCCCTCCCACCTCTGTGGCCTCAGGCTCTAGCCTCTGGCTTTGGAGAAGGCTCCA GAGCAGGGTGTAGGGACCCCGCAGAGTCAAGTTCAAATCCCGCGGACCTCCCCGCCCCCC CTTTCCCCAGTCTGAGTCAGAGAGAAAGGGCAGAGTCTTCAGCAAGCCAGGCAGGTAACT GGGGACCTAGCCACCACCTCCCATGGAGACCGGAGGGCTTGAAATTGACCCATGGTCCCT TACTTTCCCAGGGTGGGCTTAGAAAGCAGGGGCTGCAAGAGGGAATCCCCGAAGGTGCCA GATGTGGGAGCAGGAGAGTCAGAAGGAGACAGGGTGGGCGAGACGCTGGAGAGGAGAGAG GAGAGGAGAGAGCAGAGAGCGGTCTCAGGCAGGTGGCAGGGGTGCGCACCTCCCCGGACC TGCCCCTCCCCCACTGCAGGGGCTCTGGACAGAAACAATAAAAAGATAAGCACAAGCCTA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 816-909, - strand, RNAz p=0.820478 | |
| 1185-1327, + strand, RNAz p=0.806814 | |
| 1452-1570, - strand, RNAz p=0.836174 | |
| 1806-2042, - strand, RNAz p=0.999943 | |
| 2112-2267, + strand, RNAz p=0.996604 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 816-909, - strand, RNAz p=0.820478 | |
| 1185-1327, + strand, RNAz p=0.806814 | |
| 1452-1570, - strand, RNAz p=0.836174 | |
| 1806-2042, - strand, RNAz p=0.999943 | |
| 2112-2267, + strand, RNAz p=0.996604 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001927, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 267-661, gnl|bosTau2|chr13 (19897105-19897500) | |
| 267-661, gnl|Hg17|chr10 (17311596-17311991) | |
| 267-661, gnl|Mm7|chr2 (13513758-13514153) | |
| 816-981, gnl|bosTau2|chr13 (19900947-19901112) | |
| 816-981, gnl|canFam2|chr2 (22509928-22509737) | |
| 816-981, gnl|danRer3|chr24 (29506854-29507034) | |
| 816-981, gnl|dasNov1|scaffold_103823 (2232-2422) | |
| 816-981, gnl|echTel1|scaffold_89498 (975-1172) | |
| 816-981, gnl|fr1|chrUn (164749177-164748992) | |
| 816-981, gnl|galGal2|chr2 (19103260-19103112) | |
| 816-981, gnl|hg17|chr10 (17315758-17315949) | |
| 816-981, gnl|Hg17|chr10 (17315773-17315938) | |
| 816-981, gnl|loxAfr1|scaffold_72049 (6548-6701) | |
| 816-981, gnl|mm7|chr2 (13517727-13517921) | |
| 816-981, gnl|Mm7|chr2 (13517745-13517910) | |
| 816-981, gnl|monDom2|scaffold_7 (52317732-52317540) | |
| 816-981, gnl|oryCun1|scaffold_178329 (49810-50001) | |
| 816-981, gnl|panTro1|chr5 (129493049-129492931) | |
| 816-981, gnl|rheMac2|chr9 (17528708-17528899) | |
| 816-981, gnl|rn3|chr17 (87862372-87862566) | |
| 816-981, gnl|tetNig1|chrUn_random (16824824-16824650) | |
| 816-981, gnl|xenTro1|scaffold_553 (740881-741071) | |
| 1106-1327, gnl|bosTau2|chr13 (19902269-19902490) | |
| 1106-1327, gnl|Hg17|chr10 (17317174-17317395) | |
| 1106-1327, gnl|Mm7|chr2 (13519176-13519397) | |
| 1452-2280, gnl|bosTau2|chr2 (64437922-64437120) | |
| 1452-2280, gnl|Hg17|chr2 (220116174-220116966) | |
| 1452-2280, gnl|Mm7|chr1 (75593201-75593913) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 267-661, gnl|bosTau2|chr13 (19897105-19897500) | |
| 267-661, gnl|Hg17|chr10 (17311596-17311991) | |
| 267-661, gnl|Mm7|chr2 (13513758-13514153) | |
| 816-981, gnl|bosTau2|chr13 (19900947-19901112) | |
| 816-981, gnl|canFam2|chr2 (22509928-22509737) | |
| 816-981, gnl|danRer3|chr24 (29506854-29507034) | |
| 816-981, gnl|dasNov1|scaffold_103823 (2232-2422) | |
| 816-981, gnl|echTel1|scaffold_89498 (975-1172) | |
| 816-981, gnl|fr1|chrUn (164749177-164748992) | |
| 816-981, gnl|galGal2|chr2 (19103260-19103112) | |
| 816-981, gnl|hg17|chr10 (17315758-17315949) | |
| 816-981, gnl|Hg17|chr10 (17315773-17315938) | |
| 816-981, gnl|loxAfr1|scaffold_72049 (6548-6701) | |
| 816-981, gnl|mm7|chr2 (13517727-13517921) | |
| 816-981, gnl|Mm7|chr2 (13517745-13517910) | |
| 816-981, gnl|monDom2|scaffold_7 (52317732-52317540) | |
| 816-981, gnl|oryCun1|scaffold_178329 (49810-50001) | |
| 816-981, gnl|panTro1|chr5 (129493049-129492931) | |
| 816-981, gnl|rheMac2|chr9 (17528708-17528899) | |
| 816-981, gnl|rn3|chr17 (87862372-87862566) | |
| 816-981, gnl|tetNig1|chrUn_random (16824824-16824650) | |
| 816-981, gnl|xenTro1|scaffold_553 (740881-741071) | |
| 1106-1327, gnl|bosTau2|chr13 (19902269-19902490) | |
| 1106-1327, gnl|Hg17|chr10 (17317174-17317395) | |
| 1106-1327, gnl|Mm7|chr2 (13519176-13519397) | |
| 1452-2280, gnl|bosTau2|chr2 (64437922-64437120) | |
| 1452-2280, gnl|Hg17|chr2 (220116174-220116966) | |
| 1452-2280, gnl|Mm7|chr1 (75593201-75593913) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| nms (3.63559) | |
| mas (3.15457) | |
| clu (3.11079) | |
| ese (2.27704) | |
| che (1.63577) | |
| hlv (1.11405) | |
| nje (0.99552) | |
| ssp (0.948638) | |
| eru (0.840336) | |
| nco (0.808669) | |
| nep (0.7357) | |
| ton (0.702001) | |
| sto (0.539471) | |
| cov (0.528611) | |
| csp (0.483559) | |
| cly (0.361925) | |
| lnt (0.284616) | |
| jca (0.22792) | |
| hea (0.204499) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| cst (0.140036) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (3.63559) | |
| mas (3.15457) | |
| clu (3.11079) | |
| ese (2.27704) | |
| che (1.63577) | |
| hlv (1.11405) | |
| nje (0.99552) | |
| ssp (0.948638) | |
| eru (0.840336) | |
| nco (0.808669) | |
| nep (0.7357) | |
| ton (0.702001) | |
| sto (0.539471) | |
| cov (0.528611) | |
| csp (0.483559) | |
| cly (0.361925) | |
| lnt (0.284616) | |
| jca (0.22792) | |
| hea (0.204499) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| cst (0.140036) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cty (0.10408) | |
| eje (0.0988338) |