Ss1.1-Tra1-TCH01H120039.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCATGTGGGGTCTCCTGCTCGCCTTGGCCACCTTTGCGCCTGCCGTCGGTGTCAGTC TGGGGGCGCCCAGTGCCTCCGTGCTGGGCTTGGCGCCGCCCGGGACCACCAAGGCCCCGG TCCCGAGCCCGGCCCCGCGGAGCAGCCCGACAGAGCCGCCCGCGGGGAAGGAGAACGGGA CCTCAGAACACCATGTACGGATTCGAGTCATCAAGAAGAAAAAGATCATCATGAAGAAGC GAAAGAAGCTAACTCACCCGAGACCCCCAGTCACTGCCGGGCCTTCGGTGACCACCAGCC CTGCAGGGACCCTTGACCTCCCCGAGAAGCAAGAACCAGGCTGTCCCCCTTTGGGCCTGG AGTCCCTGCGAGTTTCAGATAACCAGTTGGACGCATCTAGCAGCCAGTCCTTTGGTCTTG GACCACACCGAGGACGGCTCAACATCCAGTCAGGCCTGGAGGATGGTGACCTTTTTGATG GGGCCTGGTGTGCTGAGCAGCAGGACGCCGAGCCATGGCTTCAGGTGGACGCTAGACACC CCACCCGCTTCTCGGGCGTTATCACACAGGGCAGGAACTCCATCTGGAGGTATGACTGGG TCACATCATACAAGGTCCAGTTCAGCAATGACAGTCGGACCTGGTGGGGGAGTAAGAACC GCAGCAGTGGGATGGACGCGGTATTTCCTGCCAATTCGGACCCGGAGACACCAGTGATGA ACCTTCTGCCTGAGCCGCAGGTGGCCCGCTTCATTCGTCTGCTGCCCCAAACCTGGCTCG AGGGAGGTGCAGCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCGGTCTCAGATCCTAATA GCCTGTTCCCTGAGGTCCCTATGCTGGGCTCCTCCGACCCACTGGATTTCCGGCATCATG ATTATAAAGCCATGAGGAAGCTGATGAAGCAGGTGAACGAGCAATGCCCCAACATCACCC GCGTCTACAGCATCGGGAAGAGCCATCAGGGCCTGAAGCTGTATGTGATGGAAATGTCAG ACCAGCCTGGGGAGCATGAGCTGGGAGAGCCCGAGGTGCGCTACGTGGCTGGCATGCATG GGAATGAGGCCCTCGGGCGGGAGTTGCTCCTGCTCCTCATGCAGTTCCTGTGCCACGAGT TCCTGAGAGGGGACCCGAGAGTGACCCGGCTGCTCACTGAAATGCGCATTCACCTGCTGC CCTCCATGAACCCCGATGGCTATGAGACTGCCTTCCGCCGGGGCTCAGAGCTGGTGGGCT GGGCAGAGGGCCGCTGGAACCACCAGGGCATTGACCTTAACCATAATTTTGCTGACCTCA ACACACCGCTGTGGGAAGCAGAGGACGATGGGCTGGTACCTGACACTGTCCCGAACCATC ACCTGCCACTGCCCACTTACTACACCCTGCCCAATGCCACTGTGGCTCCTGAAACACGGG CCGTGATCAAGTGGATGGAGCGGATCCCTTTCGTGTTAAGCGCCAACCTCCACGGGGGTG AGCTCGTGGTGTCCTACCCCTTCGACATGACTCGGACTCCGTGGGCTGCCCGAGAACTCA CGCCCACCCCGGATGAGGCCGTGTTTCGCTGGCTCAGCACTGTTTATGCAGGCACTAATC GGGCCATGCAGGACCCAGATCGCCGACCCTGCCACAGCCAGGACTTCTCCTCATATGGCA ATGTCATCAACGGGGCTGACTGGCATACTGTGCCTGGGAGCATGAATGACTTCAGCTACC TACACACCAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCATGTGGGGTCTCCTGCTCGCCTTGGCCACCTTTGCGCCTGCCGTCGGTGTCAGTC TGGGGGCGCCCAGTGCCTCCGTGCTGGGCTTGGCGCCGCCCGGGACCACCAAGGCCCCGG TCCCGAGCCCGGCCCCGCGGAGCAGCCCGACAGAGCCGCCCGCGGGGAAGGAGAACGGGA CCTCAGAACACCATGTACGGATTCGAGTCATCAAGAAGAAAAAGATCATCATGAAGAAGC GAAAGAAGCTAACTCACCCGAGACCCCCAGTCACTGCCGGGCCTTCGGTGACCACCAGCC CTGCAGGGACCCTTGACCTCCCCGAGAAGCAAGAACCAGGCTGTCCCCCTTTGGGCCTGG AGTCCCTGCGAGTTTCAGATAACCAGTTGGACGCATCTAGCAGCCAGTCCTTTGGTCTTG GACCACACCGAGGACGGCTCAACATCCAGTCAGGCCTGGAGGATGGTGACCTTTTTGATG GGGCCTGGTGTGCTGAGCAGCAGGACGCCGAGCCATGGCTTCAGGTGGACGCTAGACACC CCACCCGCTTCTCGGGCGTTATCACACAGGGCAGGAACTCCATCTGGAGGTATGACTGGG TCACATCATACAAGGTCCAGTTCAGCAATGACAGTCGGACCTGGTGGGGGAGTAAGAACC GCAGCAGTGGGATGGACGCGGTATTTCCTGCCAATTCGGACCCGGAGACACCAGTGATGA ACCTTCTGCCTGAGCCGCAGGTGGCCCGCTTCATTCGTCTGCTGCCCCAAACCTGGCTCG AGGGAGGTGCAGCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCGGTCTCAGATCCTAATA GCCTGTTCCCTGAGGTCCCTATGCTGGGCTCCTCCGACCCACTGGATTTCCGGCATCATG ATTATAAAGCCATGAGGAAGCTGATGAAGCAGGTGAACGAGCAATGCCCCAACATCACCC GCGTCTACAGCATCGGGAAGAGCCATCAGGGCCTGAAGCTGTATGTGATGGAAATGTCAG ACCAGCCTGGGGAGCATGAGCTGGGAGAGCCCGAGGTGCGCTACGTGGCTGGCATGCATG GGAATGAGGCCCTCGGGCGGGAGTTGCTCCTGCTCCTCATGCAGTTCCTGTGCCACGAGT TCCTGAGAGGGGACCCGAGAGTGACCCGGCTGCTCACTGAAATGCGCATTCACCTGCTGC CCTCCATGAACCCCGATGGCTATGAGACTGCCTTCCGCCGGGGCTCAGAGCTGGTGGGCT GGGCAGAGGGCCGCTGGAACCACCAGGGCATTGACCTTAACCATAATTTTGCTGACCTCA ACACACCGCTGTGGGAAGCAGAGGACGATGGGCTGGTACCTGACACTGTCCCGAACCATC ACCTGCCACTGCCCACTTACTACACCCTGCCCAATGCCACTGTGGCTCCTGAAACACGGG CCGTGATCAAGTGGATGGAGCGGATCCCTTTCGTGTTAAGCGCCAACCTCCACGGGGGTG AGCTCGTGGTGTCCTACCCCTTCGACATGACTCGGACTCCGTGGGCTGCCCGAGAACTCA CGCCCACCCCGGATGAGGCCGTGTTTCGCTGGCTCAGCACTGTTTATGCAGGCACTAATC GGGCCATGCAGGACCCAGATCGCCGACCCTGCCACAGCCAGGACTTCTCCTCATATGGCA ATGTCATCAACGGGGCTGACTGGCATACTGTGCCTGGGAGCATGAATGACTTCAGCTACC TACACACCAACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 177-340, gnl|bosTau2|chr13 (41370041-41369878) | |
| 177-340, gnl|Hg17|chr20 (2727540-2727371) | |
| 177-340, gnl|Mm7|chr2 (130137346-130137183) | |
| 447-652, gnl|bosTau2|chr13 (41369525-41369320) | |
| 447-652, gnl|Hg17|chr20 (2726940-2726746) | |
| 447-652, gnl|Mm7|chr2 (130136824-130136616) | |
| 680-831, gnl|bosTau2|chr13 (41368624-41368473) | |
| 680-831, gnl|canFam2|chr24 (21454314-21454159) | |
| 680-831, gnl|danRer3|chr13 (9099374-9099529) | |
| 680-831, gnl|echTel1|scaffold_261777 (9767-9889) | |
| 680-831, gnl|fr1|chrUn (181821034-181820879) | |
| 680-831, gnl|hg17|chr20 (2725837-2725992) | |
| 680-831, gnl|Hg17|chr20 (2725989-2725838) | |
| 680-831, gnl|loxAfr1|scaffold_139924 (478-323) | |
| 680-831, gnl|mm7|chr2 (130135774-130135929) | |
| 680-831, gnl|Mm7|chr2 (130135926-130135775) | |
| 680-831, gnl|monDom2|scaffold_10 (48555146-48555301) | |
| 680-831, gnl|oryCun1|scaffold_191517 (5769-5924) | |
| 680-831, gnl|panTro1|chr21 (2702303-2702458) | |
| 680-831, gnl|rheMac2|chr10 (36106300-36106455) | |
| 680-831, gnl|rn3|chr3 (117910731-117910886) | |
| 680-831, gnl|tetNig1|chr20 (2931928-2931776) | |
| 680-831, gnl|xenTro1|scaffold_140 (1901689-1901534) | |
| 1044-1242, gnl|bosTau2|chr13 (41367770-41367572) | |
| 1044-1242, gnl|canFam2|chr24 (21455215-21455008) | |
| 1044-1242, gnl|danRer3|chr13 (9090976-9091182) | |
| 1044-1242, gnl|dasNov1|scaffold_34255 (14110-14312) | |
| 1044-1242, gnl|echTel1|scaffold_319903 (32389-32181) | |
| 1044-1242, gnl|fr1|chrUn (181822306-181822105) | |
| 1044-1242, gnl|galGal2|chr6 (30949579-30949781) | |
| 1044-1242, gnl|hg17|chr20 (2724886-2725093) | |
| 1044-1242, gnl|Hg17|chr20 (2725090-2724892) | |
| 1044-1242, gnl|mm7|chr2 (130134878-130135085) | |
| 1044-1242, gnl|Mm7|chr2 (130135082-130134884) | |
| 1044-1242, gnl|monDom2|scaffold_10 (48552292-48552500) | |
| 1044-1242, gnl|oryCun1|scaffold_191517 (4870-5077) | |
| 1044-1242, gnl|panTro1|chr21 (2701355-2701562) | |
| 1044-1242, gnl|rheMac2|chr10 (36105362-36105569) | |
| 1044-1242, gnl|rn3|chr3 (117909818-117910025) | |
| 1044-1242, gnl|tetNig1|chr20 (2932974-2932769) | |
| 1044-1242, gnl|xenTro1|scaffold_140 (1904281-1904079) | |
| 1406-1724, gnl|bosTau2|chr13 (41367251-41366934) | |
| 1406-1724, gnl|Hg17|chr20 (2724556-2724240) | |
| 1406-1724, gnl|Mm7|chr2 (130134549-130134232) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 177-340, gnl|bosTau2|chr13 (41370041-41369878) | |
| 177-340, gnl|Hg17|chr20 (2727540-2727371) | |
| 177-340, gnl|Mm7|chr2 (130137346-130137183) | |
| 447-652, gnl|bosTau2|chr13 (41369525-41369320) | |
| 447-652, gnl|Hg17|chr20 (2726940-2726746) | |
| 447-652, gnl|Mm7|chr2 (130136824-130136616) | |
| 680-831, gnl|bosTau2|chr13 (41368624-41368473) | |
| 680-831, gnl|canFam2|chr24 (21454314-21454159) | |
| 680-831, gnl|danRer3|chr13 (9099374-9099529) | |
| 680-831, gnl|echTel1|scaffold_261777 (9767-9889) | |
| 680-831, gnl|fr1|chrUn (181821034-181820879) | |
| 680-831, gnl|hg17|chr20 (2725837-2725992) | |
| 680-831, gnl|Hg17|chr20 (2725989-2725838) | |
| 680-831, gnl|loxAfr1|scaffold_139924 (478-323) | |
| 680-831, gnl|mm7|chr2 (130135774-130135929) | |
| 680-831, gnl|Mm7|chr2 (130135926-130135775) | |
| 680-831, gnl|monDom2|scaffold_10 (48555146-48555301) | |
| 680-831, gnl|oryCun1|scaffold_191517 (5769-5924) | |
| 680-831, gnl|panTro1|chr21 (2702303-2702458) | |
| 680-831, gnl|rheMac2|chr10 (36106300-36106455) | |
| 680-831, gnl|rn3|chr3 (117910731-117910886) | |
| 680-831, gnl|tetNig1|chr20 (2931928-2931776) | |
| 680-831, gnl|xenTro1|scaffold_140 (1901689-1901534) | |
| 1044-1242, gnl|bosTau2|chr13 (41367770-41367572) | |
| 1044-1242, gnl|canFam2|chr24 (21455215-21455008) | |
| 1044-1242, gnl|danRer3|chr13 (9090976-9091182) | |
| 1044-1242, gnl|dasNov1|scaffold_34255 (14110-14312) | |
| 1044-1242, gnl|echTel1|scaffold_319903 (32389-32181) | |
| 1044-1242, gnl|fr1|chrUn (181822306-181822105) | |
| 1044-1242, gnl|galGal2|chr6 (30949579-30949781) | |
| 1044-1242, gnl|hg17|chr20 (2724886-2725093) | |
| 1044-1242, gnl|Hg17|chr20 (2725090-2724892) | |
| 1044-1242, gnl|mm7|chr2 (130134878-130135085) | |
| 1044-1242, gnl|Mm7|chr2 (130135082-130134884) | |
| 1044-1242, gnl|monDom2|scaffold_10 (48552292-48552500) | |
| 1044-1242, gnl|oryCun1|scaffold_191517 (4870-5077) | |
| 1044-1242, gnl|panTro1|chr21 (2701355-2701562) | |
| 1044-1242, gnl|rheMac2|chr10 (36105362-36105569) | |
| 1044-1242, gnl|rn3|chr3 (117909818-117910025) | |
| 1044-1242, gnl|tetNig1|chr20 (2932974-2932769) | |
| 1044-1242, gnl|xenTro1|scaffold_140 (1904281-1904079) | |
| 1406-1724, gnl|bosTau2|chr13 (41367251-41366934) | |
| 1406-1724, gnl|Hg17|chr20 (2724556-2724240) | |
| 1406-1724, gnl|Mm7|chr2 (130134549-130134232) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.241284) | |
| nep (0.183925) | |
| ese (0.126502) |