Non-Coding RNA Search

Ss1.1-Tra1-TCH01H120101.5

Sequence:


               
               ATATTATTTTAAATGTCCAGACTGGTCCCTGGAGAACAGGAATATCTAGGAACTCTTAAT
ATTTTAGATAGGAGGATATAACATTCATGTCCAGACTTTTTGACAGCAAGGTATTGATGG
AAGAATTAGGCAATAATTGGCAGTTAGGAAACCCAGGGAAGTGGTTTATAAACTGTCATC
CACAGAGCTCTGAGGTTTCCATGGAGGTTTCTCAAGACTCATTGCAGGCTCCAAGCCCCT
TCCTGCTGTCTTCAACCCAAGAAGCTTTTCTTATTGGACTTTTGAGAGTCCACTGTTGTT
AAAAAAAATTTTTTTTAAGTCAATAAAAACAGCGTGAGCCAGATCATATGAGCAAATGTA
TACTAAGGTCCAAGGAAACTATGTGCTTAGAATATGAAGCTATGTTGATGATAATAAGAG
ATAAGAATGAATCTGGGAGTTCCCATAGTGGTGCAGTGGTTGGCGAATCCGACTAGGAAC
CATGAGGTTGCGGGTTCGATCCCTGGACTTGCTCAGTGGGTTGACGATCCAGCGTTGCCG
TGAGCTGTGGTGTAGGTCACAGACTTGGCTCGGATCCTGCGTTGCTGTAGCTCCGATTAG
ACCCCTAGCCTGGGAACCTCCATATGCCGTGGGAGCGGCCCTAGAAAAGGCAAAAAGAAA
AAAAAAAAATGAATCTGAATATCAGCTTTGAAAAGGGTTACCTTTTGGCCAAATTGGCTT
GCTTAATTAAGTTAGGATGAGAACAAAAGGGGGCTTTGACTCGGATTTTTTTGTGTTTGG
TTGCATAAGGTCGTTATGGAAAAAAGCAGGCTTATTGCTACCTTCTCTCATATAATTAGG
ATTCTTTCCTAGGCAGCAGCCTCAAGAACAGAACATCCCAGACCAGTCTTTGGTTAAAAA
AAATAAAGCATTCTATTTTACTAAAAATAGGAGGGTCTCTGTGTGCATAAACTAGATCCA
AATTGTTAATCATATACGTAGGCAGACAGCCTGTGTGCCCTCTATGACATATGTGCTTCA
TCTTCTCTAAACTGCACTCTCCTTAAGAGTTTATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTATTTTAAATGTCCAGACTGGTCCCTGGAGAACAGGAATATCTAGGAACTCTTAAT
ATTTTAGATAGGAGGATATAACATTCATGTCCAGACTTTTTGACAGCAAGGTATTGATGG
AAGAATTAGGCAATAATTGGCAGTTAGGAAACCCAGGGAAGTGGTTTATAAACTGTCATC
CACAGAGCTCTGAGGTTTCCATGGAGGTTTCTCAAGACTCATTGCAGGCTCCAAGCCCCT
TCCTGCTGTCTTCAACCCAAGAAGCTTTTCTTATTGGACTTTTGAGAGTCCACTGTTGTT
AAAAAAAATTTTTTTTAAGTCAATAAAAACAGCGTGAGCCAGATCATATGAGCAAATGTA
TACTAAGGTCCAAGGAAACTATGTGCTTAGAATATGAAGCTATGTTGATGATAATAAGAG
ATAAGAATGAATCTGGGAGTTCCCATAGTGGTGCAGTGGTTGGCGAATCCGACTAGGAAC
CATGAGGTTGCGGGTTCGATCCCTGGACTTGCTCAGTGGGTTGACGATCCAGCGTTGCCG
TGAGCTGTGGTGTAGGTCACAGACTTGGCTCGGATCCTGCGTTGCTGTAGCTCCGATTAG
ACCCCTAGCCTGGGAACCTCCATATGCCGTGGGAGCGGCCCTAGAAAAGGCAAAAAGAAA
AAAAAAAAATGAATCTGAATATCAGCTTTGAAAAGGGTTACCTTTTGGCCAAATTGGCTT
GCTTAATTAAGTTAGGATGAGAACAAAAGGGGGCTTTGACTCGGATTTTTTTGTGTTTGG
TTGCATAAGGTCGTTATGGAAAAAAGCAGGCTTATTGCTACCTTCTCTCATATAATTAGG
ATTCTTTCCTAGGCAGCAGCCTCAAGAACAGAACATCCCAGACCAGTCTTTGGTTAAAAA
AAATAAAGCATTCTATTTTACTAAAAATAGGAGGGTCTCTGTGTGCATAAACTAGATCCA
AATTGTTAATCATATACGTAGGCAGACAGCCTGTGTGCCCTCTATGACATATGTGCTTCA
TCTTCTCTAAACTGCACTCTCCTTAAGAGTTTATCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               109-228, + strand, RNAz p=0.9506
               

               
               799-904, - strand, RNAz p=0.570005

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               109-228, + strand, RNAz p=0.9506
               

               
               799-904, - strand, RNAz p=0.570005

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-228, gnl|bosTau2|chr10 (17117277-17117504)
               

               
               1-228, gnl|canFam2|chr30 (12255858-12256480)
               

               
               1-228, gnl|hg17|chr15 (40364292-40365010)
               

               
               1-228, gnl|Hg17|chr15 (40364556-40364787)
               

               
               1-228, gnl|loxAfr1|scaffold_7868 (7945-8860)
               

               
               1-228, gnl|panTro1|chr16 (40338947-40339661)
               

               
               1-228, gnl|rheMac2|chr7 (20695588-20696349)
               


               
               655-1003, gnl|bosTau2|chr10 (17117682-17118027)
               

               
               655-1003, gnl|Hg17|chr15 (40365029-40365611)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr10 (17117277-17117504)
               

               
               1-228, gnl|canFam2|chr30 (12255858-12256480)
               

               
               1-228, gnl|hg17|chr15 (40364292-40365010)
               

               
               1-228, gnl|Hg17|chr15 (40364556-40364787)
               

               
               1-228, gnl|loxAfr1|scaffold_7868 (7945-8860)
               

               
               1-228, gnl|panTro1|chr16 (40338947-40339661)
               

               
               1-228, gnl|rheMac2|chr7 (20695588-20696349)
               


               
               655-1003, gnl|bosTau2|chr10 (17117682-17118027)
               

               
               655-1003, gnl|Hg17|chr15 (40365029-40365611)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	109-228, + strand, RNAz p=0.9506
	799-904, - strand, RNAz p=0.570005

	1-228, gnl\|bosTau2\|chr10 (17117277-17117504)
	1-228, gnl\|canFam2\|chr30 (12255858-12256480)
	1-228, gnl\|hg17\|chr15 (40364292-40365010)
	1-228, gnl\|Hg17\|chr15 (40364556-40364787)
	1-228, gnl\|loxAfr1\|scaffold_7868 (7945-8860)
	1-228, gnl\|panTro1\|chr16 (40338947-40339661)
	1-228, gnl\|rheMac2\|chr7 (20695588-20696349)

	655-1003, gnl\|bosTau2\|chr10 (17117682-17118027)
	655-1003, gnl\|Hg17\|chr15 (40365029-40365611)