Non-Coding RNA Search

Ss1.1-Utr1-UTR010001A03.5

Sequence:


               
               TGTCAGCGGATAAACGCCCTCTCCTTAGTTCCCGGACGAGAGGGAGGATGCGGTAGTGAG
TGCGCGCTGAAAAGCAAGAGCGCAACTGAAGGAGCCGGTGAGAGGGCGAGAGCCATGCTG
CGCCGGGGCCTAGTGGCCGGGCCAGACTTTGAGTATTTCCAGCGTCGCTATTTCACGCCG
GCCGAGGTGGCCCAACACAACCAGCTGGAAGACCTCTGGGTGTCTTACCTGGGAAACGTG
TACGACCTGACGCCGTTGGCACAGGAGTACAAGGGAGACCTGCTGCTGAAACCCATCGTG
GAAGTTGCGGGCCAGGACATCAGCCACTGGTTCGACCCAGACACCGGAGACATCCGCAAG
CACATAGATCCGCTGACCGGTTGCCTGAGATACCGCACCCCCTGGGGCCGCTTTCTGCAC
GTGCCACCTCAGCTGCCGCGTTCGGACTGGGCCAATGATTTCGGGAAGCCTTGGTGGCAG
GGGTCGCGTTACGAGGTGGGGCGGCTGTCCGCCAAGACCCGGACTATCCGCATCATTAAC
ACGCTCACGTCGCAGGAACACACGCTGGAGGTGGGGGCTCTGGAATCATTGTGGGAAATC
CTACACCGCTATCTCCCCTATAATGCACATGCCGCCAGCTACACATGGAAATATGAAGGG
AAGAACCTGAACATGGATGATACCCTGGAAGACAACGGTATATGGGATGAGGAGGAAGAG
CTTGATTCTCTCGATGTGGACAGTACACACCATACACCTGCGTTGCTCCTCTACTTCAAT
GATGACCTCACCGAGCTATAGGGCGGGAGATGGATGCTTATGTAGAGTCAAGACATTTTG
AGTTTAGCTGTTCCTGTGCCCCTTAGGAAAAGAGGTGGGAATGGGGTGTGTGTGTTGGGG
GGGGGGTGTGTGCGCGTGCACGCGCGGCTAGACTTCTGTTCCACTCTGGGAGCTGGCCTG
TGGTTTCCAGGCCCTGCTGAAGCGTAAAGGTCCTACTCCTCCGCTTCATTACAATTTACT
TTGAGAAAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCAGCGGATAAACGCCCTCTCCTTAGTTCCCGGACGAGAGGGAGGATGCGGTAGTGAG
TGCGCGCTGAAAAGCAAGAGCGCAACTGAAGGAGCCGGTGAGAGGGCGAGAGCCATGCTG
CGCCGGGGCCTAGTGGCCGGGCCAGACTTTGAGTATTTCCAGCGTCGCTATTTCACGCCG
GCCGAGGTGGCCCAACACAACCAGCTGGAAGACCTCTGGGTGTCTTACCTGGGAAACGTG
TACGACCTGACGCCGTTGGCACAGGAGTACAAGGGAGACCTGCTGCTGAAACCCATCGTG
GAAGTTGCGGGCCAGGACATCAGCCACTGGTTCGACCCAGACACCGGAGACATCCGCAAG
CACATAGATCCGCTGACCGGTTGCCTGAGATACCGCACCCCCTGGGGCCGCTTTCTGCAC
GTGCCACCTCAGCTGCCGCGTTCGGACTGGGCCAATGATTTCGGGAAGCCTTGGTGGCAG
GGGTCGCGTTACGAGGTGGGGCGGCTGTCCGCCAAGACCCGGACTATCCGCATCATTAAC
ACGCTCACGTCGCAGGAACACACGCTGGAGGTGGGGGCTCTGGAATCATTGTGGGAAATC
CTACACCGCTATCTCCCCTATAATGCACATGCCGCCAGCTACACATGGAAATATGAAGGG
AAGAACCTGAACATGGATGATACCCTGGAAGACAACGGTATATGGGATGAGGAGGAAGAG
CTTGATTCTCTCGATGTGGACAGTACACACCATACACCTGCGTTGCTCCTCTACTTCAAT
GATGACCTCACCGAGCTATAGGGCGGGAGATGGATGCTTATGTAGAGTCAAGACATTTTG
AGTTTAGCTGTTCCTGTGCCCCTTAGGAAAAGAGGTGGGAATGGGGTGTGTGTGTTGGGG
GGGGGGTGTGTGCGCGTGCACGCGCGGCTAGACTTCTGTTCCACTCTGGGAGCTGGCCTG
TGGTTTCCAGGCCCTGCTGAAGCGTAAAGGTCCTACTCCTCCGCTTCATTACAATTTACT
TTGAGAAAGTTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16552638|dbj|BAB71357.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16552638|dbj|BAB71357.1|

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-275, gnl|bosTau2|chr19 (15375408-15375135)
               

               
               1-275, gnl|Hg17|chr17 (7702057-7702338)
               

               
               1-275, gnl|Mm7|chr11 (69476975-69476707)
               


               
               569-886, gnl|bosTau2|chr19 (15374072-15373753)
               

               
               569-886, gnl|Hg17|chr17 (7703423-7703741)
               

               
               569-886, gnl|Mm7|chr11 (69475444-69475133)
               


               
               928-1029, gnl|bosTau2|chr19 (15373735-15373634)
               

               
               928-1029, gnl|canFam2|chr5 (35710426-35710756)
               

               
               928-1029, gnl|echTel1|scaffold_294139 (46477-46181)
               

               
               928-1029, gnl|hg17|chr17 (7703674-7703981)
               

               
               928-1029, gnl|Hg17|chr17 (7703753-7703845)
               

               
               928-1029, gnl|loxAfr1|scaffold_19862 (23787-23478)
               

               
               928-1029, gnl|mm7|chr11 (69475199-69474898)
               

               
               928-1029, gnl|Mm7|chr11 (69475122-69475014)
               

               
               928-1029, gnl|monDom2|scaffold_66 (5075534-5075849)
               

               
               928-1029, gnl|oryCun1|scaffold_209667 (8436-8723)
               

               
               928-1029, gnl|panTro1|chr19_random (44040091-44039784)
               

               
               928-1029, gnl|rheMac2|chr16 (7607569-7607876)
               

               
               928-1029, gnl|rn3|chr10 (56201938-56201635)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-275, gnl|bosTau2|chr19 (15375408-15375135)
               

               
               1-275, gnl|Hg17|chr17 (7702057-7702338)
               

               
               1-275, gnl|Mm7|chr11 (69476975-69476707)
               


               
               569-886, gnl|bosTau2|chr19 (15374072-15373753)
               

               
               569-886, gnl|Hg17|chr17 (7703423-7703741)
               

               
               569-886, gnl|Mm7|chr11 (69475444-69475133)
               


               
               928-1029, gnl|bosTau2|chr19 (15373735-15373634)
               

               
               928-1029, gnl|canFam2|chr5 (35710426-35710756)
               

               
               928-1029, gnl|echTel1|scaffold_294139 (46477-46181)
               

               
               928-1029, gnl|hg17|chr17 (7703674-7703981)
               

               
               928-1029, gnl|Hg17|chr17 (7703753-7703845)
               

               
               928-1029, gnl|loxAfr1|scaffold_19862 (23787-23478)
               

               
               928-1029, gnl|mm7|chr11 (69475199-69474898)
               

               
               928-1029, gnl|Mm7|chr11 (69475122-69475014)
               

               
               928-1029, gnl|monDom2|scaffold_66 (5075534-5075849)
               

               
               928-1029, gnl|oryCun1|scaffold_209667 (8436-8723)
               

               
               928-1029, gnl|panTro1|chr19_random (44040091-44039784)
               

               
               928-1029, gnl|rheMac2|chr16 (7607569-7607876)
               

               
               928-1029, gnl|rn3|chr10 (56201938-56201635)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               cst (0.140036)

	1-275, gnl\|bosTau2\|chr19 (15375408-15375135)
	1-275, gnl\|Hg17\|chr17 (7702057-7702338)
	1-275, gnl\|Mm7\|chr11 (69476975-69476707)

	569-886, gnl\|bosTau2\|chr19 (15374072-15373753)
	569-886, gnl\|Hg17\|chr17 (7703423-7703741)
	569-886, gnl\|Mm7\|chr11 (69475444-69475133)

	928-1029, gnl\|bosTau2\|chr19 (15373735-15373634)
	928-1029, gnl\|canFam2\|chr5 (35710426-35710756)
	928-1029, gnl\|echTel1\|scaffold_294139 (46477-46181)
	928-1029, gnl\|hg17\|chr17 (7703674-7703981)
	928-1029, gnl\|Hg17\|chr17 (7703753-7703845)
	928-1029, gnl\|loxAfr1\|scaffold_19862 (23787-23478)
	928-1029, gnl\|mm7\|chr11 (69475199-69474898)
	928-1029, gnl\|Mm7\|chr11 (69475122-69475014)
	928-1029, gnl\|monDom2\|scaffold_66 (5075534-5075849)
	928-1029, gnl\|oryCun1\|scaffold_209667 (8436-8723)
	928-1029, gnl\|panTro1\|chr19_random (44040091-44039784)
	928-1029, gnl\|rheMac2\|chr16 (7607569-7607876)
	928-1029, gnl\|rn3\|chr10 (56201938-56201635)