Non-Coding RNA Search

Ss1.1-Utr1-UTR010001A12.5

Sequence:


               
               CGGTGGAGGAGGGCGTGGGCCGGGAGCGGCGGCGGCGCGTGCTGCAGACGCTGCTCTGGT
TCCTGCTCACCCTGCTGCTGGCGCTCTTCATCCCTGACATCGGCAAGGGGATCTCAGTCA
TCGGAGGCCTGGCCGCCTGCTTCATCTTCGTCTTCCCAGGGCTGGGCGGGGGGGCGAGCC
AAACTCTCTGAGAGGGAAGAAGTCAAGCCAGCCAGCTGGGGGGCAATGGGCAGTTACGGA
ATCCTCTTGGGCACCCTGGGAGCCTTCATCTTCGGGCAGACCACAGCCAACGCCATCTTT
GTGGACCTCTTGTCTTAACCAGTACCTCCCAGGGAACACTTGGCCTTTGCCATTGCACCC
CGGACCACCTCATAGACCTTTGGGGCCACCTGAGTCTGGCAACACTCCCCTCTACTGGTG
GGATGACACCTGGACATCCTTCTTCAAGGACGATTCTGGGATGAAACCAGGCCCCACACC
TCTGGACAGCTCAAACCCAGCTCCCTTCCTGCTCCCCCATCCTGGCTGGGCTGTGGATAG
TGGGAGGAGGTCTCGTGTCACAGAGGAACCTTCTCCCCTTCTTCACCTCTCAAATTCTCC
ATGCCTGGAAGTCATGGGTGAAGAGGGTCATGTCTCCAAAGAAAGAGCCCAGTCTGACTT
CCCTCTGCAGAAGGAGTGTGGACCAAGGGCTGCTCTCTCCACAGAAAAGCCCATCCTGAG
TAGGGGCCGTGCTCCTTACCCCTGACTCAGTGCCTGCTCCAGGCTGTCGGCAGCTCAGCC
AGCATGGCTTCCTCTGGCAAGTTCCAGAAGTAGCGCTGAAGTCACACAAATGTGCAGAGG
CAGGCAGACTGATGCCTTCCCTGCTGCCTCCCGAGGCCACAGTGAGCCCTCTTTCCCATG
GCCGACTGACATGNTCCCAGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGGAGGAGGGCGTGGGCCGGGAGCGGCGGCGGCGCGTGCTGCAGACGCTGCTCTGGT
TCCTGCTCACCCTGCTGCTGGCGCTCTTCATCCCTGACATCGGCAAGGGGATCTCAGTCA
TCGGAGGCCTGGCCGCCTGCTTCATCTTCGTCTTCCCAGGGCTGGGCGGGGGGGCGAGCC
AAACTCTCTGAGAGGGAAGAAGTCAAGCCAGCCAGCTGGGGGGCAATGGGCAGTTACGGA
ATCCTCTTGGGCACCCTGGGAGCCTTCATCTTCGGGCAGACCACAGCCAACGCCATCTTT
GTGGACCTCTTGTCTTAACCAGTACCTCCCAGGGAACACTTGGCCTTTGCCATTGCACCC
CGGACCACCTCATAGACCTTTGGGGCCACCTGAGTCTGGCAACACTCCCCTCTACTGGTG
GGATGACACCTGGACATCCTTCTTCAAGGACGATTCTGGGATGAAACCAGGCCCCACACC
TCTGGACAGCTCAAACCCAGCTCCCTTCCTGCTCCCCCATCCTGGCTGGGCTGTGGATAG
TGGGAGGAGGTCTCGTGTCACAGAGGAACCTTCTCCCCTTCTTCACCTCTCAAATTCTCC
ATGCCTGGAAGTCATGGGTGAAGAGGGTCATGTCTCCAAAGAAAGAGCCCAGTCTGACTT
CCCTCTGCAGAAGGAGTGTGGACCAAGGGCTGCTCTCTCCACAGAAAAGCCCATCCTGAG
TAGGGGCCGTGCTCCTTACCCCTGACTCAGTGCCTGCTCCAGGCTGTCGGCAGCTCAGCC
AGCATGGCTTCCTCTGGCAAGTTCCAGAAGTAGCGCTGAAGTCACACAAATGTGCAGAGG
CAGGCAGACTGATGCCTTCCCTGCTGCCTCCCGAGGCCACAGTGAGCCCTCTTTCCCATG
GCCGACTGACATGNTCCCAGGCTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-165, gnl|bosTau2|chr18 (23333213-23333049)
               

               
               1-165, gnl|Hg17|chr16 (57262608-57262444)
               

               
               1-165, gnl|Mm7|chr8 (94430634-94430470)
               


               
               213-924, gnl|bosTau2|chr18 (23330137-23329411)
               

               
               213-924, gnl|Hg17|chr16 (57258895-57258202)
               

               
               213-924, gnl|Mm7|chr8 (94426628-94425978)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr18 (23333213-23333049)
               

               
               1-165, gnl|Hg17|chr16 (57262608-57262444)
               

               
               1-165, gnl|Mm7|chr8 (94430634-94430470)
               


               
               213-924, gnl|bosTau2|chr18 (23330137-23329411)
               

               
               213-924, gnl|Hg17|chr16 (57258895-57258202)
               

               
               213-924, gnl|Mm7|chr8 (94426628-94425978)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-165, gnl\|bosTau2\|chr18 (23333213-23333049)
	1-165, gnl\|Hg17\|chr16 (57262608-57262444)
	1-165, gnl\|Mm7\|chr8 (94430634-94430470)

	213-924, gnl\|bosTau2\|chr18 (23330137-23329411)
	213-924, gnl\|Hg17\|chr16 (57258895-57258202)
	213-924, gnl\|Mm7\|chr8 (94426628-94425978)