Non-Coding RNA Search

Ss1.1-Utr1-UTR010001D04.5

Sequence:


               
               TCGCACCTGTGCTGGAGCCCCATTCCTCCCTCCCACACTCGCCATCTCGCTGGCCGTTAC
ATCTGTGCAGGGCTGGTTCGTTCTGACTTTTTGTTTCTTTGTCTGTGTTTGCTTGGTGCT
GGTCTATTCGTCGTTTTCTGGGGGAAAAAGCCATATCGCGCTAAAATTCTATAGAGAAGG
ATATTGGCCTAAGTGTCAAGTGGTGACTGGGATGGTTTGCTATCTCTGGGTTCCACTGCT
TGAAACGGCCCCTGCCTTCCCCGGGGGAGCTGGTTTCCTCCAGGGCCGGCAAACCTAGCC
GGAAGGCAGAGGTCCCATTGTAGGCAGCTGAGGTGTCTGGCCTGAGGTCAATGGTGCAAG
GAGCCCTGCCACCGGGCTCGCCTGCCTGGCGTGCTGGGCTGTGTTTAATCAGGGGATACA
GGCCCCTGTGTTTCTTTTTCCTTTCTTCCTTTCTTCCTTGGCAATGAGAAGGGCTTGCAG
GCATGGACACGCAGCTTGGGAAAAGGGCTTGATGTTGGCTGATTGAAAAAATTTGAGAAA
GTCAGAAAGATTAATTTTTCCTTCCTCTGTAAGATATCCCAGCTTTAAAAGAAGAAAAAA
GAATGACCGGGAGAAGGAGACTTCTCTTCCAGTTTGTGTAAGGTCTTGCATTGCAGGACG
AAATTACTTCACTTACCTCTGAATTTCCATGTTCTTCTGGCTGTAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCACCTGTGCTGGAGCCCCATTCCTCCCTCCCACACTCGCCATCTCGCTGGCCGTTAC
ATCTGTGCAGGGCTGGTTCGTTCTGACTTTTTGTTTCTTTGTCTGTGTTTGCTTGGTGCT
GGTCTATTCGTCGTTTTCTGGGGGAAAAAGCCATATCGCGCTAAAATTCTATAGAGAAGG
ATATTGGCCTAAGTGTCAAGTGGTGACTGGGATGGTTTGCTATCTCTGGGTTCCACTGCT
TGAAACGGCCCCTGCCTTCCCCGGGGGAGCTGGTTTCCTCCAGGGCCGGCAAACCTAGCC
GGAAGGCAGAGGTCCCATTGTAGGCAGCTGAGGTGTCTGGCCTGAGGTCAATGGTGCAAG
GAGCCCTGCCACCGGGCTCGCCTGCCTGGCGTGCTGGGCTGTGTTTAATCAGGGGATACA
GGCCCCTGTGTTTCTTTTTCCTTTCTTCCTTTCTTCCTTGGCAATGAGAAGGGCTTGCAG
GCATGGACACGCAGCTTGGGAAAAGGGCTTGATGTTGGCTGATTGAAAAAATTTGAGAAA
GTCAGAAAGATTAATTTTTCCTTCCTCTGTAAGATATCCCAGCTTTAAAAGAAGAAAAAA
GAATGACCGGGAGAAGGAGACTTCTCTTCCAGTTTGTGTAAGGTCTTGCATTGCAGGACG
AAATTACTTCACTTACCTCTGAATTTCCATGTTCTTCTGGCTGTAGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-465, - strand, RNAz p=0.815639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-465, - strand, RNAz p=0.815639

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr4 (40171165-40171853)
               

               
               1-708, gnl|Hg17|chr7 (26984679-26983974)
               

               
               1-708, gnl|Mm7|chr6 (52195798-52195093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr4 (40171165-40171853)
               

               
               1-708, gnl|Hg17|chr7 (26984679-26983974)
               

               
               1-708, gnl|Mm7|chr6 (52195798-52195093)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               jca (0.11396)

	1-708, gnl\|bosTau2\|chr4 (40171165-40171853)
	1-708, gnl\|Hg17\|chr7 (26984679-26983974)
	1-708, gnl\|Mm7\|chr6 (52195798-52195093)

	col (0.195008)
	cut (0.169924)
	nco (0.161734)
	ste (0.135208)
	jca (0.11396)