Non-Coding RNA Search

Ss1.1-Utr1-UTR010002B10.5

Sequence:


               
               TGGATGGGCAGCAGTTGTAACTGTGGCAGGAAAGCCTCAGGCAGTATTGATGGAGCAAAG
TGGCCTTTGTACCAAATTTATAGCTGACTAGATGGGCAAGTGGTCCTCACACGGGCAGCA
TAGTTAGCTTAGGAGATAACACATCTCCTCTTTGACTTTTGTCGTGTTTTTATTTCCTGA
TTTACTTCAGCAGATGTGTTTGAAGGACATCATGAAGGTTCTTTGGAAGAGTGACTGGAT
CCATGTGAACCGTGCCCTTGAACACTTGTGATATAAATGTGCCTATTTGTATTTTTAAAA
TTTAACTGTGCAGCCTTATCATGCCTATTTCAGAAGCTGACCTTCGTGCTCTGCAGGGCT
TGTCCCGCGTGCTGTGTTGTCTCTAGTGTGCAGGTGGCTTCTCGTTCAGAGAGCAGCGCT
GAGGCAGGGCCTTGTGCCGAGTCACAGTCACAGGGCTCCTCGGAACAGGAACAGGAGAAC
TCTCACAAGTCCTCCCGCACAGGTGGGGGATGGAAACAGTTTGTGGCAACACAAATCTCT
CTCCATGGTGGAGAAACCTGTGCTTATCCACTGGATTCTACTCAGTGTCTAGTGATCCAG
ATGTAACACAACTAAGCCGGGCAAGTGTATGGGCCCTCCCTGGTTGTATTAAATGTGTGT
CTCACCTCTGGAACCTACTCAGCAGCTTGGTTTCTGGGGCTGGGCACACATTTACTTCTT
AAAGCCAAGCCTCTCCTTCACTGGTTTAGTGTGTACCTAAGTCTGTTTAGTACACTTGGC
CCACGTCAACCTCCACCGTCCCCCTGTTGCTGAAGTATCCTCTTCACTCGGGCTCTGGAG
ACACTCATGAGCAAAAGTCTGTGCCTGCAGCCAGGGCATGGGTCCCAGGTGACAGGAAGG
GGTGGGTGTGTGCTGGCGTCATGCTGCAGTCCAAGGTCTAAGCATCGCTTCACTGGGTGC
ATGCCTTTCCCCCTCAGGTCTGAGGGCGACGGACTCCAGACTGCCCTCTTCGAGTCGTGC
TGTGATGCAGTTATGTTCACTAAGACCTAGTTTGTCCGATGCTGAGAAGATTAACTGTGC
CAGTGACCAATTTCATTTAAGTTGTAACCATACCCCTTTTCTGCTTCACCAACCCGATCT
TTTTTATGGAAAGTATCATTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATGGGCAGCAGTTGTAACTGTGGCAGGAAAGCCTCAGGCAGTATTGATGGAGCAAAG
TGGCCTTTGTACCAAATTTATAGCTGACTAGATGGGCAAGTGGTCCTCACACGGGCAGCA
TAGTTAGCTTAGGAGATAACACATCTCCTCTTTGACTTTTGTCGTGTTTTTATTTCCTGA
TTTACTTCAGCAGATGTGTTTGAAGGACATCATGAAGGTTCTTTGGAAGAGTGACTGGAT
CCATGTGAACCGTGCCCTTGAACACTTGTGATATAAATGTGCCTATTTGTATTTTTAAAA
TTTAACTGTGCAGCCTTATCATGCCTATTTCAGAAGCTGACCTTCGTGCTCTGCAGGGCT
TGTCCCGCGTGCTGTGTTGTCTCTAGTGTGCAGGTGGCTTCTCGTTCAGAGAGCAGCGCT
GAGGCAGGGCCTTGTGCCGAGTCACAGTCACAGGGCTCCTCGGAACAGGAACAGGAGAAC
TCTCACAAGTCCTCCCGCACAGGTGGGGGATGGAAACAGTTTGTGGCAACACAAATCTCT
CTCCATGGTGGAGAAACCTGTGCTTATCCACTGGATTCTACTCAGTGTCTAGTGATCCAG
ATGTAACACAACTAAGCCGGGCAAGTGTATGGGCCCTCCCTGGTTGTATTAAATGTGTGT
CTCACCTCTGGAACCTACTCAGCAGCTTGGTTTCTGGGGCTGGGCACACATTTACTTCTT
AAAGCCAAGCCTCTCCTTCACTGGTTTAGTGTGTACCTAAGTCTGTTTAGTACACTTGGC
CCACGTCAACCTCCACCGTCCCCCTGTTGCTGAAGTATCCTCTTCACTCGGGCTCTGGAG
ACACTCATGAGCAAAAGTCTGTGCCTGCAGCCAGGGCATGGGTCCCAGGTGACAGGAAGG
GGTGGGTGTGTGCTGGCGTCATGCTGCAGTCCAAGGTCTAAGCATCGCTTCACTGGGTGC
ATGCCTTTCCCCCTCAGGTCTGAGGGCGACGGACTCCAGACTGCCCTCTTCGAGTCGTGC
TGTGATGCAGTTATGTTCACTAAGACCTAGTTTGTCCGATGCTGAGAAGATTAACTGTGC
CAGTGACCAATTTCATTTAAGTTGTAACCATACCCCTTTTCTGCTTCACCAACCCGATCT
TTTTTATGGAAAGTATCATTAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61830430|ref|XP_611513.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61830430|ref|XP_611513.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               414-611, - strand, RNAz p=0.98549
               

               
               685-803, + strand, RNAz p=0.620064

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-611, - strand, RNAz p=0.98549
               

               
               685-803, + strand, RNAz p=0.620064

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-803, gnl|bosTau2|chr10 (31552561-31553357)
               

               
               5-803, gnl|Hg17|chr15 (61672674-61673466)
               

               
               5-803, gnl|Mm7|chr9 (66547145-66546455)
               


               
               893-1164, gnl|bosTau2|chr10 (31553495-31553764)
               

               
               893-1164, gnl|Hg17|chr15 (61673598-61673871)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-803, gnl|bosTau2|chr10 (31552561-31553357)
               

               
               5-803, gnl|Hg17|chr15 (61672674-61673466)
               

               
               5-803, gnl|Mm7|chr9 (66547145-66546455)
               


               
               893-1164, gnl|bosTau2|chr10 (31553495-31553764)
               

               
               893-1164, gnl|Hg17|chr15 (61673598-61673871)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               cty (0.10408)

	414-611, - strand, RNAz p=0.98549
	685-803, + strand, RNAz p=0.620064

	5-803, gnl\|bosTau2\|chr10 (31552561-31553357)
	5-803, gnl\|Hg17\|chr15 (61672674-61673466)
	5-803, gnl\|Mm7\|chr9 (66547145-66546455)

	893-1164, gnl\|bosTau2\|chr10 (31553495-31553764)
	893-1164, gnl\|Hg17\|chr15 (61673598-61673871)