Non-Coding RNA Search

Ss1.1-Utr1-UTR010004F02.5

Sequence:


               
               ATATGATATTTGTCTTTGTCTGACTTACTTCACTTAATATGATAATCTCTAGGTCCATCC
ATATTGCTGCAAATGGCATTATTTCATTCATTTTTATGGTTAGAGAACTTGTAAGTTTTA
GTTACATCACACATGCAGAGTCTCCTAAAGAACATTCTTGTATGTATTTTAGAGTTCTTA
TATAAAAATGCTTCACCAGGAGTTCCTGTTGTGGCACAGTGGATAATGAATCTGACTAGG
AACCATGAGGTTGCAGGTTTGATCCCTGGCCTTGCTTAATGGGTTAAGGATCTGGCATTG
CCATGAGCTGTGGTGTATGTCGCAGATGCAGCTCGGATCCCGTGTTCCTGTGGCTCTGGC
GTAGGCTGGAGGCTGCAGTTCTGATTTGATCCCTAGTCTGGGAACCTCTATGTGCCGGGG
GAAGCAGCCCTAGAAAAGGCAAAAAGACAAAAAAAAAAAAAATGCTTCACCAAAGTGTGT
GGAAATTTATTTTATTACCTGTACTACCATAAATCTAAGCCAATAATCAACATTATGAGC
TTTTTCTTGTTTGCAAATCCAAAAATTCAAAAATAAATCTCTCCCTTTTTGAATTCCTTC
CTTCACCTGCTGAAGCCTCTCCACCTGCCCTTTAGATTACACACCATGTTTCCTGCTGGG
ACTCAAAGACTCCAGTTGTCTCAAAACTTGGTGATAGGGAGTTCTCTGGTAGTGTAGTGC
CTAGGACTCAGCACTTTCACCACTGTGGCCCAGGTTCAGTCCCTGGTCTGGGAACTGATA
TCGTCTGGCCAAAGTCCAAGAAGACCAAAACGTAACACCCCCAAACCAAAAAACACTTGA
TGGCAATACAAAGTGTATTCACTACTTCACCCAAGGGTGTATTGGGCCTGGTATTACACT
GAAGGCTGAAGCTACTACAGTTGTGAACAAAAGTGGTATCTTCCATATTTGCCTCTATGG
AACTTCCACAGTTGCCTCTATGGAACTTATAGGTCAGGGACAGAGATGTTACTGAGATAA
TTGTTGGAATGCAGGTGCATTTCCCAACTGAGAAGAGGCCTGTGGGTATAGAAGGATCTG
TTTCAGTCTGATGATGGTGGCTGGCAGGGAAGGGCTCCCTGGGAAAAGATCTTTGCTCTG
AAGATGAGTAGGAGCTAATCGACCATCATAATTGGGGTAGTAAATGGGCTAGGAGGAAGA
GCTTTGTAATTGGACATGCAAAGGCCCTGTGGTAGGAGGCAGGGAAACAAGTTTGAGGAA
CTGAAAGAAAGCCATGTGGCTGAGACTAGAACACAAGGTGAAGTTTGGTGACAGGTAAAG
CCAAAATGGGCTAGAACAAAGCCTGCCTGATTATTTTGTAAATGCAGTAAGAAGGCAGTG
ATGAATTTAAGCAAAGGTGGAAGTCAAGGTGAGGATGGTGTGTGTATGTGTGTGTGTGTT
TTCATAGGCAGGTACCCTGATTGGGTTTGCATTACGTAAATTGTAATAAAATATGAAAAG
AAGGCCTAGATTTTAAAAAGTCATGATCTTGCTTACCATGCACCTGTTGCCCATGTAAGC
AAATAGTTCATGATTCTTTTGGAATTAGTTCTTTTCAACAATGCAGTTATTTTTCAGAGT
TTAGCCAAGAAATACTAATAAAGTCATTTTCCTACTGGGCGGAGAGTCCCAGTCCAATTT
AGTGTCCACAACTAACCGTTGCAATATAATTTAATCCTTAACAACTCGACCAAAGCCAAG
ACAACAGTAAATGTGTTTTTACTCATAATTAAGGCTGCTCAAAAGTAAAAGTTAAACAAA
GGCAGCGGAACGATGTACAAATAATGACTTGGTAGAAATGGGTCCAGTATGTGCTGATGA
AAGTAGATGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGATATTTGTCTTTGTCTGACTTACTTCACTTAATATGATAATCTCTAGGTCCATCC
ATATTGCTGCAAATGGCATTATTTCATTCATTTTTATGGTTAGAGAACTTGTAAGTTTTA
GTTACATCACACATGCAGAGTCTCCTAAAGAACATTCTTGTATGTATTTTAGAGTTCTTA
TATAAAAATGCTTCACCAGGAGTTCCTGTTGTGGCACAGTGGATAATGAATCTGACTAGG
AACCATGAGGTTGCAGGTTTGATCCCTGGCCTTGCTTAATGGGTTAAGGATCTGGCATTG
CCATGAGCTGTGGTGTATGTCGCAGATGCAGCTCGGATCCCGTGTTCCTGTGGCTCTGGC
GTAGGCTGGAGGCTGCAGTTCTGATTTGATCCCTAGTCTGGGAACCTCTATGTGCCGGGG
GAAGCAGCCCTAGAAAAGGCAAAAAGACAAAAAAAAAAAAAATGCTTCACCAAAGTGTGT
GGAAATTTATTTTATTACCTGTACTACCATAAATCTAAGCCAATAATCAACATTATGAGC
TTTTTCTTGTTTGCAAATCCAAAAATTCAAAAATAAATCTCTCCCTTTTTGAATTCCTTC
CTTCACCTGCTGAAGCCTCTCCACCTGCCCTTTAGATTACACACCATGTTTCCTGCTGGG
ACTCAAAGACTCCAGTTGTCTCAAAACTTGGTGATAGGGAGTTCTCTGGTAGTGTAGTGC
CTAGGACTCAGCACTTTCACCACTGTGGCCCAGGTTCAGTCCCTGGTCTGGGAACTGATA
TCGTCTGGCCAAAGTCCAAGAAGACCAAAACGTAACACCCCCAAACCAAAAAACACTTGA
TGGCAATACAAAGTGTATTCACTACTTCACCCAAGGGTGTATTGGGCCTGGTATTACACT
GAAGGCTGAAGCTACTACAGTTGTGAACAAAAGTGGTATCTTCCATATTTGCCTCTATGG
AACTTCCACAGTTGCCTCTATGGAACTTATAGGTCAGGGACAGAGATGTTACTGAGATAA
TTGTTGGAATGCAGGTGCATTTCCCAACTGAGAAGAGGCCTGTGGGTATAGAAGGATCTG
TTTCAGTCTGATGATGGTGGCTGGCAGGGAAGGGCTCCCTGGGAAAAGATCTTTGCTCTG
AAGATGAGTAGGAGCTAATCGACCATCATAATTGGGGTAGTAAATGGGCTAGGAGGAAGA
GCTTTGTAATTGGACATGCAAAGGCCCTGTGGTAGGAGGCAGGGAAACAAGTTTGAGGAA
CTGAAAGAAAGCCATGTGGCTGAGACTAGAACACAAGGTGAAGTTTGGTGACAGGTAAAG
CCAAAATGGGCTAGAACAAAGCCTGCCTGATTATTTTGTAAATGCAGTAAGAAGGCAGTG
ATGAATTTAAGCAAAGGTGGAAGTCAAGGTGAGGATGGTGTGTGTATGTGTGTGTGTGTT
TTCATAGGCAGGTACCCTGATTGGGTTTGCATTACGTAAATTGTAATAAAATATGAAAAG
AAGGCCTAGATTTTAAAAAGTCATGATCTTGCTTACCATGCACCTGTTGCCCATGTAAGC
AAATAGTTCATGATTCTTTTGGAATTAGTTCTTTTCAACAATGCAGTTATTTTTCAGAGT
TTAGCCAAGAAATACTAATAAAGTCATTTTCCTACTGGGCGGAGAGTCCCAGTCCAATTT
AGTGTCCACAACTAACCGTTGCAATATAATTTAATCCTTAACAACTCGACCAAAGCCAAG
ACAACAGTAAATGTGTTTTTACTCATAATTAAGGCTGCTCAAAAGTAAAAGTTAAACAAA
GGCAGCGGAACGATGTACAAATAATGACTTGGTAGAAATGGGTCCAGTATGTGCTGATGA
AAGTAGATGTGG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1-102, gnl|bosTau2|chr16 (17745693-17745591)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-102, gnl|bosTau2|chr16 (17745693-17745591)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)