Non-Coding RNA Search

Ss1.1-Utr1-UTR010005C06.5

Sequence:


               
               AAGCTAAATGTAATCTATTTATAAAGCAAGAGACTCTCATCTATTTTTATGAAAGGAAAG
GTTTTTTTTAAATCTAGGGTAGGCAGTTGTGGTAGCCCAGCGTTTTTCTGTGGACAAGGT
GCATGTTGCTGCTGGATTTAATATCATCAGTTCCCCTCACCCTGTTTCCCCATCCTCACT
GCCTCCTCACCCACACCCAGGAGCGGCTTCAGCAGAGCGGAGTGCCCCCCTCACCCCGTT
TCCCTGTCCCTTGATCCCCCAGCTCCTTGGCCCTTGGAGGCCTAGGGGATGGGCACTTGT
GGGAGTGGGTGGGCAATGGGGCATTCAGAATGGAGACGGGTGGTGGGAGGGGAAAGGGGT
GCTGGGTAGGGGACACGCTCTGCTTCAGCCCTGGCCTGCCCAGACCCTTTTCCCAGTCAG
CTGCGTTTGGGAGAGGGTTGAGAAGCAGCAGAGTGTGGGTGGCGGTGGCTGTTGGTTCAG
GGAGCGCACGGCTTCCTTGGGGCCTGGGCTCCTGTGGGTCCCGGGTGGTCAGGCAGCTGG
AGCAGGAGTGGAAATGCCATGAGATGCCCATGGCCCAGCCCTGGCTGTGCTTCCCCCAGG
CCAACGCCTGGGATATCATCCTTGATAATGCTCCTCCAGAGCCCTGGATGAGGAACTAAG
GTGTTGGGGGCTTCCTTATACCCTGTCCCACCTTGGGACACTGAGCTGTGGTTCTAGAAG
GGCCTTCAACTAGAGTGGTTAGTCTGGAGGCGGCCAGGGAGGGGTAAAGGCAGAGTCTCT
CTGGAAGGGAATTTTCCACACGTGGAAGATTTCGGGCTCAGGGTGAGCTGTGTGTTAGTT
TTGGGCAAACCCCTCACTGTTCCCCCCACCAGGCTGTCAAAGAAATGAAGCAAAGGCACG
CTCACCCAGACCCCTTCGTGAACATTTTAGCATCTACCTGATTTTTAGTCCCATCTGGGG
AGACTTTCTATCCCCATGTCCCATCCCACCCCACTGTGGCTGTTTGTCTGCCAGCTGGGT
CTAGCGTCGAGGGGAAGGGGGGTGTTTATACTCATTGAAAGACTACTGATCCTACCGGAA
ACCAACCTGTTTACTGTACTGTTGTAAATATCATGCCCTTTATATCCTGTATATTGGCTT
CTTTTAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTAAATGTAATCTATTTATAAAGCAAGAGACTCTCATCTATTTTTATGAAAGGAAAG
GTTTTTTTTAAATCTAGGGTAGGCAGTTGTGGTAGCCCAGCGTTTTTCTGTGGACAAGGT
GCATGTTGCTGCTGGATTTAATATCATCAGTTCCCCTCACCCTGTTTCCCCATCCTCACT
GCCTCCTCACCCACACCCAGGAGCGGCTTCAGCAGAGCGGAGTGCCCCCCTCACCCCGTT
TCCCTGTCCCTTGATCCCCCAGCTCCTTGGCCCTTGGAGGCCTAGGGGATGGGCACTTGT
GGGAGTGGGTGGGCAATGGGGCATTCAGAATGGAGACGGGTGGTGGGAGGGGAAAGGGGT
GCTGGGTAGGGGACACGCTCTGCTTCAGCCCTGGCCTGCCCAGACCCTTTTCCCAGTCAG
CTGCGTTTGGGAGAGGGTTGAGAAGCAGCAGAGTGTGGGTGGCGGTGGCTGTTGGTTCAG
GGAGCGCACGGCTTCCTTGGGGCCTGGGCTCCTGTGGGTCCCGGGTGGTCAGGCAGCTGG
AGCAGGAGTGGAAATGCCATGAGATGCCCATGGCCCAGCCCTGGCTGTGCTTCCCCCAGG
CCAACGCCTGGGATATCATCCTTGATAATGCTCCTCCAGAGCCCTGGATGAGGAACTAAG
GTGTTGGGGGCTTCCTTATACCCTGTCCCACCTTGGGACACTGAGCTGTGGTTCTAGAAG
GGCCTTCAACTAGAGTGGTTAGTCTGGAGGCGGCCAGGGAGGGGTAAAGGCAGAGTCTCT
CTGGAAGGGAATTTTCCACACGTGGAAGATTTCGGGCTCAGGGTGAGCTGTGTGTTAGTT
TTGGGCAAACCCCTCACTGTTCCCCCCACCAGGCTGTCAAAGAAATGAAGCAAAGGCACG
CTCACCCAGACCCCTTCGTGAACATTTTAGCATCTACCTGATTTTTAGTCCCATCTGGGG
AGACTTTCTATCCCCATGTCCCATCCCACCCCACTGTGGCTGTTTGTCTGCCAGCTGGGT
CTAGCGTCGAGGGGAAGGGGGGTGTTTATACTCATTGAAAGACTACTGATCCTACCGGAA
ACCAACCTGTTTACTGTACTGTTGTAAATATCATGCCCTTTATATCCTGTATATTGGCTT
CTTTTAAATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               226-325, + strand, RNAz p=0.977915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-325, + strand, RNAz p=0.977915

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               232-373, - strand, RNAmicro p=0.995593
               

               
               241-335, + strand, RNAmicro p=0.993826

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               232-373, - strand, RNAmicro p=0.995593
               

               
               241-335, + strand, RNAmicro p=0.993826

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-388, gnl|bosTau2|chr2 (60828779-60828392)
               

               
               1-388, gnl|canFam2|chr2 (82578619-82578265)
               

               
               1-388, gnl|dasNov1|scaffold_4286 (64424-64047)
               

               
               1-388, gnl|echTel1|scaffold_318999 (6971-7322)
               

               
               1-388, gnl|hg17|chr1 (18976801-18977159)
               

               
               1-388, gnl|Hg17|chr1 (18977269-18976886)
               

               
               1-388, gnl|loxAfr1|scaffold_61916 (12519-12841)
               

               
               1-388, gnl|mm7|chr4 (138998220-138997942)
               

               
               1-388, gnl|Mm7|chr4 (138997835-138998257)
               

               
               1-388, gnl|panTro1|chr1 (19199741-19200099)
               

               
               1-388, gnl|rheMac2|chr1 (21551677-21552011)
               

               
               1-388, gnl|rn3|chr5 (158431764-158431475)
               


               
               802-1152, gnl|bosTau2|chr2 (60828304-60827951)
               

               
               802-1152, gnl|Hg17|chr1 (18976448-18976100)
               

               
               802-1152, gnl|Mm7|chr4 (138998452-138998805)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-388, gnl|bosTau2|chr2 (60828779-60828392)
               

               
               1-388, gnl|canFam2|chr2 (82578619-82578265)
               

               
               1-388, gnl|dasNov1|scaffold_4286 (64424-64047)
               

               
               1-388, gnl|echTel1|scaffold_318999 (6971-7322)
               

               
               1-388, gnl|hg17|chr1 (18976801-18977159)
               

               
               1-388, gnl|Hg17|chr1 (18977269-18976886)
               

               
               1-388, gnl|loxAfr1|scaffold_61916 (12519-12841)
               

               
               1-388, gnl|mm7|chr4 (138998220-138997942)
               

               
               1-388, gnl|Mm7|chr4 (138997835-138998257)
               

               
               1-388, gnl|panTro1|chr1 (19199741-19200099)
               

               
               1-388, gnl|rheMac2|chr1 (21551677-21552011)
               

               
               1-388, gnl|rn3|chr5 (158431764-158431475)
               


               
               802-1152, gnl|bosTau2|chr2 (60828304-60827951)
               

               
               802-1152, gnl|Hg17|chr1 (18976448-18976100)
               

               
               802-1152, gnl|Mm7|chr4 (138998452-138998805)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	232-373, - strand, RNAmicro p=0.995593
	241-335, + strand, RNAmicro p=0.993826

	1-388, gnl\|bosTau2\|chr2 (60828779-60828392)
	1-388, gnl\|canFam2\|chr2 (82578619-82578265)
	1-388, gnl\|dasNov1\|scaffold_4286 (64424-64047)
	1-388, gnl\|echTel1\|scaffold_318999 (6971-7322)
	1-388, gnl\|hg17\|chr1 (18976801-18977159)
	1-388, gnl\|Hg17\|chr1 (18977269-18976886)
	1-388, gnl\|loxAfr1\|scaffold_61916 (12519-12841)
	1-388, gnl\|mm7\|chr4 (138998220-138997942)
	1-388, gnl\|Mm7\|chr4 (138997835-138998257)
	1-388, gnl\|panTro1\|chr1 (19199741-19200099)
	1-388, gnl\|rheMac2\|chr1 (21551677-21552011)
	1-388, gnl\|rn3\|chr5 (158431764-158431475)

	802-1152, gnl\|bosTau2\|chr2 (60828304-60827951)
	802-1152, gnl\|Hg17\|chr1 (18976448-18976100)
	802-1152, gnl\|Mm7\|chr4 (138998452-138998805)

	amn (0.417711)
	ldo (0.194005)
	nep (0.183925)
	fty (0.17584)
	eye (0.170503)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)