Non-Coding RNA Search

Ss1.1-Utr1-UTR010005D04.5

Sequence:


               
               ATGGCCCTTGCCCAAGGCTGAGCCCTTGTGTTTTCCATAAGCTCTGATGAGGCTTGACCC
GGGACAGGGGTTGACTGTGGGACTTGTCTTCATTTATTTGTTCTGTAAATTCTTGTCACA
GCCTACCCTTGCAGGGGAATGAGGGATAAGATCTTTCTGATTTAAAAGAGCCACTGTTCG
GAAAGGCTTTGGGTTCCCAGGATCCATCTGGAGACCCCGCAGTTCCTGGACTTCAGTGGA
CCCTGGTTTCTCCAGGGCAGCACTGCTTGCTCCTTATCAGCATTGCTGAGTTTGTTTTGT
CCCAAGGTTGGATGATTGTCATCCTGGACAGCATTTACTGTGTTGGCATATTTCCTTATT
GAAACGCCAGCAGGAATTTACCCTGGAGCAGTCCTCCTGCTCCTCTCCTCTAGAGGAACT
GACACAGAACACTTCAGTAGTTCCTCCATCAAGGTCAGCTGTGGGAACACCCCTCTTGGC
TATTTGATCTAATTAACAGTCATTGCTGCAGAAATACCATCACAGGTTTTGGCTACAGTG
ATGTTTTGTTCTCTGCCGTCCATCATTTGCATCAAGGATAAAGCACTGTGAATGCTGAAT
GCTGGTGCTGGGTGCAGCCAGAAGCACATAGCACTGGGTGAAGGTCCAGTTGGTGTGCCT
TAATTCTTGGCACATGTTGACCTGGGTACCTACTGAGTACCAATTGTACCTGTATGGCTG
TTAGGGCCATCTGAACCCTCTAGAGGATGCCCGTTACCCAGCTGTGGCACCTGATGTCTA
CCTGTGACACCACCTGCCTTGCTCTTTTTTAGAACATGGCATCGTGCCAGTTACCAGTGA
TTGCCAGTACCTCTTCCCTGCAAAGGTCGTCTCTCGCCTGGTGAAGTGGGTGGCAATTGC
CCATGAGGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCCCTTGCCCAAGGCTGAGCCCTTGTGTTTTCCATAAGCTCTGATGAGGCTTGACCC
GGGACAGGGGTTGACTGTGGGACTTGTCTTCATTTATTTGTTCTGTAAATTCTTGTCACA
GCCTACCCTTGCAGGGGAATGAGGGATAAGATCTTTCTGATTTAAAAGAGCCACTGTTCG
GAAAGGCTTTGGGTTCCCAGGATCCATCTGGAGACCCCGCAGTTCCTGGACTTCAGTGGA
CCCTGGTTTCTCCAGGGCAGCACTGCTTGCTCCTTATCAGCATTGCTGAGTTTGTTTTGT
CCCAAGGTTGGATGATTGTCATCCTGGACAGCATTTACTGTGTTGGCATATTTCCTTATT
GAAACGCCAGCAGGAATTTACCCTGGAGCAGTCCTCCTGCTCCTCTCCTCTAGAGGAACT
GACACAGAACACTTCAGTAGTTCCTCCATCAAGGTCAGCTGTGGGAACACCCCTCTTGGC
TATTTGATCTAATTAACAGTCATTGCTGCAGAAATACCATCACAGGTTTTGGCTACAGTG
ATGTTTTGTTCTCTGCCGTCCATCATTTGCATCAAGGATAAAGCACTGTGAATGCTGAAT
GCTGGTGCTGGGTGCAGCCAGAAGCACATAGCACTGGGTGAAGGTCCAGTTGGTGTGCCT
TAATTCTTGGCACATGTTGACCTGGGTACCTACTGAGTACCAATTGTACCTGTATGGCTG
TTAGGGCCATCTGAACCCTCTAGAGGATGCCCGTTACCCAGCTGTGGCACCTGATGTCTA
CCTGTGACACCACCTGCCTTGCTCTTTTTTAGAACATGGCATCGTGCCAGTTACCAGTGA
TTGCCAGTACCTCTTCCCTGCAAAGGTCGTCTCTCGCCTGGTGAAGTGGGTGGCAATTGC
CCATGAGGATTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               307-426, + strand, RNAz p=0.732038

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-426, + strand, RNAz p=0.732038

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               269-912, gnl|bosTau2|chr17 (39464564-39463961)
               

               
               269-912, gnl|Hg17|chr22 (28238447-28237810)
               

               
               269-912, gnl|Mm7|chr11 (4873429-4874024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-912, gnl|bosTau2|chr17 (39464564-39463961)
               

               
               269-912, gnl|Hg17|chr22 (28238447-28237810)
               

               
               269-912, gnl|Mm7|chr11 (4873429-4874024)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	269-912, gnl\|bosTau2\|chr17 (39464564-39463961)
	269-912, gnl\|Hg17\|chr22 (28238447-28237810)
	269-912, gnl\|Mm7\|chr11 (4873429-4874024)