Ss1.1-Utr1-UTR010006A02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTTCCTGCCTTTTCCGCGCAGTGGAAGACTCCTAAGGAAAAACCCAATAGCATATTTG GGGCCGACGGCTGGGAGGAATTCCTGGGCCAGGGACCCAACCCGCGTCACAGCAGCAATC TGAGCCACAGCAGTGACAACGCCGGCTCCTTAACCCGCTGAGCCACCAGAGAACTCCCCG ACGGCACATTTTATAAATGAGAAAAAGAGGCCTGGAGGAAAACAATCACTTGAGGAATAA GGATATAGTTGGAACCAGAACCCAAGTTTCCTGACTCTCAGGTCTCCTGTTTCCACGGTA ACCGGTGCTTTCCGACCTTCAGTTTGCAGCGGTCGCGCTGCAGCCACCGCCGTTGTTGCT GGGCGACGGTGGAAAAAAGCTGGTGTCTTGAGCTATAAGGAAGAAGGCTGCCACACAGTC TCACGCTCTGGTCACTGTGCTGCCCTGCTGCGAATTCCTGGGCCCCAGCCAGGTCACCAG CTATTGCTCTTTGGGGGTTGCAACTCAGCTGAACCAGAAGTAGTAGGGCGTTGGAGCCAT GGGAAGATTAAGGAGGAACCACCCGTTGCACCCTGTTTGATGGAACAGCTTGCAAGGCTC GTGAGCAGGGGGCAGGGGTCCAGGCAGGGGCCTCGAGGACTACGGCATCACTCATGTTCT GTGGTTGGGCCCTTTGCTGTGCTGTTTGGTGGAGAAACTCTGACCAGAGCCAGAGACACC ATCTGCAATGACCTCTACATCTATGATACCCGCACGTCTCCTTCTCTATGGTTCCACTTC CCCTGTGCAGACCATGGGCTAAAACGCGTGGGCCATCGGACCTGCCTTTGGAATGATCAG CTCTACCTGGTTGGGGGTTTTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTTCCTGCCTTTTCCGCGCAGTGGAAGACTCCTAAGGAAAAACCCAATAGCATATTTG GGGCCGACGGCTGGGAGGAATTCCTGGGCCAGGGACCCAACCCGCGTCACAGCAGCAATC TGAGCCACAGCAGTGACAACGCCGGCTCCTTAACCCGCTGAGCCACCAGAGAACTCCCCG ACGGCACATTTTATAAATGAGAAAAAGAGGCCTGGAGGAAAACAATCACTTGAGGAATAA GGATATAGTTGGAACCAGAACCCAAGTTTCCTGACTCTCAGGTCTCCTGTTTCCACGGTA ACCGGTGCTTTCCGACCTTCAGTTTGCAGCGGTCGCGCTGCAGCCACCGCCGTTGTTGCT GGGCGACGGTGGAAAAAAGCTGGTGTCTTGAGCTATAAGGAAGAAGGCTGCCACACAGTC TCACGCTCTGGTCACTGTGCTGCCCTGCTGCGAATTCCTGGGCCCCAGCCAGGTCACCAG CTATTGCTCTTTGGGGGTTGCAACTCAGCTGAACCAGAAGTAGTAGGGCGTTGGAGCCAT GGGAAGATTAAGGAGGAACCACCCGTTGCACCCTGTTTGATGGAACAGCTTGCAAGGCTC GTGAGCAGGGGGCAGGGGTCCAGGCAGGGGCCTCGAGGACTACGGCATCACTCATGTTCT GTGGTTGGGCCCTTTGCTGTGCTGTTTGGTGGAGAAACTCTGACCAGAGCCAGAGACACC ATCTGCAATGACCTCTACATCTATGATACCCGCACGTCTCCTTCTCTATGGTTCCACTTC CCCTGTGCAGACCATGGGCTAAAACGCGTGGGCCATCGGACCTGCCTTTGGAATGATCAG CTCTACCTGGTTGGGGGTTTTGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 279-392, gnl|bosTau2|chr3 (7704824-7704713) | |
| 279-392, gnl|echTel1|scaffold_216596 (10003-9704) | |
| 279-392, gnl|hg17|chr1 (157881029-157881390) | |
| 279-392, gnl|Hg17|chr1 (157881154-157881267) | |
| 279-392, gnl|loxAfr1|scaffold_27453 (63955-63659) | |
| 279-392, gnl|mm7|chr1 (171331107-171330765) | |
| 279-392, gnl|Mm7|chr1 (171330983-171330869) | |
| 279-392, gnl|monDom2|scaffold_0 (28743468-28743111) | |
| 279-392, gnl|oryCun1|scaffold_205013 (38800-39129) | |
| 279-392, gnl|panTro1|chr1 (139947856-139948217) | |
| 279-392, gnl|rheMac2|chr1 (139708215-139708551) | |
| 279-392, gnl|rn3|chr13 (87455150-87454811) | |
| 550-752, gnl|bosTau2|chr3 (7703552-7703350) | |
| 550-752, gnl|canFam2|chr38 (24368337-24368125) | |
| 550-752, gnl|dasNov1|scaffold_2951 (47030-47242) | |
| 550-752, gnl|echTel1|scaffold_216596 (8396-8186) | |
| 550-752, gnl|hg17|chr1 (157882454-157882665) | |
| 550-752, gnl|Hg17|chr1 (157882458-157882660) | |
| 550-752, gnl|loxAfr1|scaffold_11180 (54532-54744) | |
| 550-752, gnl|mm7|chr1 (171329756-171329544) | |
| 550-752, gnl|Mm7|chr1 (171329749-171329547) | |
| 550-752, gnl|monDom2|scaffold_0 (28741904-28741681) | |
| 550-752, gnl|oryCun1|scaffold_89778 (728-940) | |
| 550-752, gnl|panTro1|chr1 (139949281-139949492) | |
| 550-752, gnl|rheMac2|chr1 (139709605-139709816) | |
| 550-752, gnl|rn3|chr13 (87453795-87453583) | |
| 550-752, gnl|xenTro1|scaffold_1017 (237664-237454) | |
| 756-864, gnl|bosTau2|chr3 (7703079-7702971) | |
| 756-864, gnl|canFam2|chr38 (24367674-24367489) | |
| 756-864, gnl|dasNov1|scaffold_2951 (47496-47681) | |
| 756-864, gnl|echTel1|scaffold_216596 (7934-7751) | |
| 756-864, gnl|hg17|chr1 (157882922-157883101) | |
| 756-864, gnl|Hg17|chr1 (157882928-157883036) | |
| 756-864, gnl|loxAfr1|scaffold_187771 (1178-998) | |
| 756-864, gnl|mm7|chr1 (171329077-171328892) | |
| 756-864, gnl|Mm7|chr1 (171329069-171328961) | |
| 756-864, gnl|monDom2|scaffold_0 (28741552-28741375) | |
| 756-864, gnl|oryCun1|scaffold_89778 (1193-1375) | |
| 756-864, gnl|panTro1|chr1 (139949745-139949924) | |
| 756-864, gnl|rheMac2|chr1 (139710072-139710254) | |
| 756-864, gnl|rn3|chr13 (87452695-87452510) | |
| 756-864, gnl|xenTro1|scaffold_1017 (236718-236540) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 279-392, gnl|bosTau2|chr3 (7704824-7704713) | |
| 279-392, gnl|echTel1|scaffold_216596 (10003-9704) | |
| 279-392, gnl|hg17|chr1 (157881029-157881390) | |
| 279-392, gnl|Hg17|chr1 (157881154-157881267) | |
| 279-392, gnl|loxAfr1|scaffold_27453 (63955-63659) | |
| 279-392, gnl|mm7|chr1 (171331107-171330765) | |
| 279-392, gnl|Mm7|chr1 (171330983-171330869) | |
| 279-392, gnl|monDom2|scaffold_0 (28743468-28743111) | |
| 279-392, gnl|oryCun1|scaffold_205013 (38800-39129) | |
| 279-392, gnl|panTro1|chr1 (139947856-139948217) | |
| 279-392, gnl|rheMac2|chr1 (139708215-139708551) | |
| 279-392, gnl|rn3|chr13 (87455150-87454811) | |
| 550-752, gnl|bosTau2|chr3 (7703552-7703350) | |
| 550-752, gnl|canFam2|chr38 (24368337-24368125) | |
| 550-752, gnl|dasNov1|scaffold_2951 (47030-47242) | |
| 550-752, gnl|echTel1|scaffold_216596 (8396-8186) | |
| 550-752, gnl|hg17|chr1 (157882454-157882665) | |
| 550-752, gnl|Hg17|chr1 (157882458-157882660) | |
| 550-752, gnl|loxAfr1|scaffold_11180 (54532-54744) | |
| 550-752, gnl|mm7|chr1 (171329756-171329544) | |
| 550-752, gnl|Mm7|chr1 (171329749-171329547) | |
| 550-752, gnl|monDom2|scaffold_0 (28741904-28741681) | |
| 550-752, gnl|oryCun1|scaffold_89778 (728-940) | |
| 550-752, gnl|panTro1|chr1 (139949281-139949492) | |
| 550-752, gnl|rheMac2|chr1 (139709605-139709816) | |
| 550-752, gnl|rn3|chr13 (87453795-87453583) | |
| 550-752, gnl|xenTro1|scaffold_1017 (237664-237454) | |
| 756-864, gnl|bosTau2|chr3 (7703079-7702971) | |
| 756-864, gnl|canFam2|chr38 (24367674-24367489) | |
| 756-864, gnl|dasNov1|scaffold_2951 (47496-47681) | |
| 756-864, gnl|echTel1|scaffold_216596 (7934-7751) | |
| 756-864, gnl|hg17|chr1 (157882922-157883101) | |
| 756-864, gnl|Hg17|chr1 (157882928-157883036) | |
| 756-864, gnl|loxAfr1|scaffold_187771 (1178-998) | |
| 756-864, gnl|mm7|chr1 (171329077-171328892) | |
| 756-864, gnl|Mm7|chr1 (171329069-171328961) | |
| 756-864, gnl|monDom2|scaffold_0 (28741552-28741375) | |
| 756-864, gnl|oryCun1|scaffold_89778 (1193-1375) | |
| 756-864, gnl|panTro1|chr1 (139949745-139949924) | |
| 756-864, gnl|rheMac2|chr1 (139710072-139710254) | |
| 756-864, gnl|rn3|chr13 (87452695-87452510) | |
| 756-864, gnl|xenTro1|scaffold_1017 (236718-236540) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.207814) | |
| cst (0.140036) | |
| che (0.136314) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| cst (0.140036) | |
| che (0.136314) | |
| eje (0.0988338) |