Non-Coding RNA Search

Ss1.1-Utr1-UTR010006E12.5

Sequence:


               
               CGCAGCTGCAGCGGGCAGTATGGCGAGCACGGCGTCGGAGATCATTGCCTTCATGGTCTC
CATCTCCGGCTGGGTGCTGGTGTCCTCCACGCTGCCCACCGACTACTGGAAGGTGTCCAC
CATCGACGGCACGGTCATCACCACCGCCACCTATTGGGCCAACCTGTGGAAGGCATGCGT
TACCGACTCCACGGGCGTCTCCAATTGCAAGGATTTCCCCTCCATGCTGGCGCTGGACGG
TTATATCCAGGCATGTCGAGGACTTATGATTGCCGCTGTCAGCCTGGGCTTTTTTGGTTC
CATATTTGCCCTGTTTGGAATGAAATGTACCAAGGTCGGAGGCTCAGATAAAGCCAAAGC
TAAAATGGCTTGTTTGGCTGGGATTGTATTCATACTGTCAGGGCTGTGCTCAATGACCGG
GTGTTCCCTGTATGCAAACAAAATCACAACGGAATTCTTTGATCCCCACTACGTGGAGCA
GAAGTATGAATTAGGAGCTGCTCTGTTTATTGGATGGGCAGGAGCCTCACTCTGCATAAT
TGGTGGTGTCATATTTTGCTTTTCAATATCTGACAACAACAAAAAACCCAGAATGGGATA
CACATACAATGGGGCCACATCTGTCATGTCTTCTCGGACAAAGTATCACGGAGGAGGAGG
AGGAGATCTGAAAACCACAAACCCTTCCAAACAGTTTGACAAAAATGCTTACGTCTAAGA
AGAGCACTGCCGCAAGCTGTGTCTTGAGCTTGTTAGAAACGTGAACTGTTCACAGAATGA
TCCCCTCAAGGCCCTCCTGTAATTAACACTCGAAAAAACTATTTTTCAAATGCGAATGTG
AAGAATTTGTTGATTGCATGGATGTAAATGTTCTTACATAGTTACATACTAATCACTTTC
TGTTGTGGCTTTCTATAACAAATAAACAAGCTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGCTGCAGCGGGCAGTATGGCGAGCACGGCGTCGGAGATCATTGCCTTCATGGTCTC
CATCTCCGGCTGGGTGCTGGTGTCCTCCACGCTGCCCACCGACTACTGGAAGGTGTCCAC
CATCGACGGCACGGTCATCACCACCGCCACCTATTGGGCCAACCTGTGGAAGGCATGCGT
TACCGACTCCACGGGCGTCTCCAATTGCAAGGATTTCCCCTCCATGCTGGCGCTGGACGG
TTATATCCAGGCATGTCGAGGACTTATGATTGCCGCTGTCAGCCTGGGCTTTTTTGGTTC
CATATTTGCCCTGTTTGGAATGAAATGTACCAAGGTCGGAGGCTCAGATAAAGCCAAAGC
TAAAATGGCTTGTTTGGCTGGGATTGTATTCATACTGTCAGGGCTGTGCTCAATGACCGG
GTGTTCCCTGTATGCAAACAAAATCACAACGGAATTCTTTGATCCCCACTACGTGGAGCA
GAAGTATGAATTAGGAGCTGCTCTGTTTATTGGATGGGCAGGAGCCTCACTCTGCATAAT
TGGTGGTGTCATATTTTGCTTTTCAATATCTGACAACAACAAAAAACCCAGAATGGGATA
CACATACAATGGGGCCACATCTGTCATGTCTTCTCGGACAAAGTATCACGGAGGAGGAGG
AGGAGATCTGAAAACCACAAACCCTTCCAAACAGTTTGACAAAAATGCTTACGTCTAAGA
AGAGCACTGCCGCAAGCTGTGTCTTGAGCTTGTTAGAAACGTGAACTGTTCACAGAATGA
TCCCCTCAAGGCCCTCCTGTAATTAACACTCGAAAAAACTATTTTTCAAATGCGAATGTG
AAGAATTTGTTGATTGCATGGATGTAAATGTTCTTACATAGTTACATACTAATCACTTTC
TGTTGTGGCTTTCTATAACAAATAAACAAGCTATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62460406|ref|NP_001014857.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62460406|ref|NP_001014857.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-241, gnl|bosTau2|chr12 (37939410-37939170)
               

               
               1-241, gnl|Hg17|chr13 (95002990-95003230)
               

               
               1-241, gnl|Mm7|chr14 (113258587-113258825)
               


               
               589-936, gnl|bosTau2|chr12 (37919452-37919110)
               

               
               589-936, gnl|Hg17|chr13 (95028152-95028487)
               

               
               589-936, gnl|Mm7|chr14 (113277803-113278136)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-241, gnl|bosTau2|chr12 (37939410-37939170)
               

               
               1-241, gnl|Hg17|chr13 (95002990-95003230)
               

               
               1-241, gnl|Mm7|chr14 (113258587-113258825)
               


               
               589-936, gnl|bosTau2|chr12 (37919452-37919110)
               

               
               589-936, gnl|Hg17|chr13 (95028152-95028487)
               

               
               589-936, gnl|Mm7|chr14 (113277803-113278136)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pro (1.02407)
               

               
               gul (0.355177)
               

               
               pty (0.285429)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               gul (0.355177)
               

               
               pty (0.285429)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	1-241, gnl\|bosTau2\|chr12 (37939410-37939170)
	1-241, gnl\|Hg17\|chr13 (95002990-95003230)
	1-241, gnl\|Mm7\|chr14 (113258587-113258825)

	589-936, gnl\|bosTau2\|chr12 (37919452-37919110)
	589-936, gnl\|Hg17\|chr13 (95028152-95028487)
	589-936, gnl\|Mm7\|chr14 (113277803-113278136)

	pro (1.02407)
	gul (0.355177)
	pty (0.285429)
	tes (0.207814)
	fhi (0.169578)
	nmm (0.132802)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)