Ss1.1-Utr1-UTR010007C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCGGCAGTGGGGCCCCTCGTCCCGGGAGCGCCATGGCGACCCTGCGCGCCTTGCTGCC ACGCGTCCGCGCCCCGCTGCGCGCCTGGCCCGGCTGCCCCGCGCTGCGCTCCTTGGCCTC GAGCGCACACTTTGAGCACATCGTCGTCGCAAAGAAGGGGAAGAGCAGCAATGTGGGGCT GATCCAGCTGAACCGCCCCAAAGCACTCAACGCCCTCTGCAAGGGCCTGATCTTGGAGCT CAACCAGGCACTGCAGGCCTTCGAGGAGGACCCAGCCGTGGGCGCCATCGTCCTCACAGG CGGGGAGAAGGCCTTTGCAGCTGGAGCCGACATCAAGGAAATGCAGAACCAGACCTTCCA GGACTGCTACTCCGGTGGGTTCTTGAGCCACTGGGACCACCTCTCCCGGGTCAGGAAGCC GGTCATAGCTGCTGTCAATGGCTACGCCCTTGGGGGCGGCTGTGAACTCGCTATGATGTG TGACATCATTTATGCTGGAGAGAAGGCCCAGTTTGGGCAGCCGGAAATCCTGCTGGGAAC CATCCCAGGTACAGGGGGCACCCAGCGGCTGACCCGCGCCGTGGGAAAGTCACTGACCAT GGAGATGGTCCTTACTGGTGACCGGATCTCAGCCCAGGAGGCGAAACAAGCAGGTCTTGT TAGCAAAATTTTTCCTGTCGAGACTCTGGTCGAAGAAGCCATCCAGTGTGCAGAAAAAAT TGCCAGCTACTCTAAGATTGTCACAGCAATGGCCAAGGAGTCAGTGAACGCAGCTTTTGA AACGTCATTAGCAGAGGGACTTAAGTTAGAGAAGAAACTCTTCTATTCAACGTTTGCCAC TGAAGACCGGAAGGAAGGCATGACCGCGTTCGTGGAGAAGAGGAAGGCCAACTTCAAAGA CCAGTAGGAACTGGCTGCCTCTGCCTTCACACCCCCACTCACAGGAGGAGAATGTAGCCT GTAGGTTTCAGAAGCAAATAAATCCTTCTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCGGCAGTGGGGCCCCTCGTCCCGGGAGCGCCATGGCGACCCTGCGCGCCTTGCTGCC ACGCGTCCGCGCCCCGCTGCGCGCCTGGCCCGGCTGCCCCGCGCTGCGCTCCTTGGCCTC GAGCGCACACTTTGAGCACATCGTCGTCGCAAAGAAGGGGAAGAGCAGCAATGTGGGGCT GATCCAGCTGAACCGCCCCAAAGCACTCAACGCCCTCTGCAAGGGCCTGATCTTGGAGCT CAACCAGGCACTGCAGGCCTTCGAGGAGGACCCAGCCGTGGGCGCCATCGTCCTCACAGG CGGGGAGAAGGCCTTTGCAGCTGGAGCCGACATCAAGGAAATGCAGAACCAGACCTTCCA GGACTGCTACTCCGGTGGGTTCTTGAGCCACTGGGACCACCTCTCCCGGGTCAGGAAGCC GGTCATAGCTGCTGTCAATGGCTACGCCCTTGGGGGCGGCTGTGAACTCGCTATGATGTG TGACATCATTTATGCTGGAGAGAAGGCCCAGTTTGGGCAGCCGGAAATCCTGCTGGGAAC CATCCCAGGTACAGGGGGCACCCAGCGGCTGACCCGCGCCGTGGGAAAGTCACTGACCAT GGAGATGGTCCTTACTGGTGACCGGATCTCAGCCCAGGAGGCGAAACAAGCAGGTCTTGT TAGCAAAATTTTTCCTGTCGAGACTCTGGTCGAAGAAGCCATCCAGTGTGCAGAAAAAAT TGCCAGCTACTCTAAGATTGTCACAGCAATGGCCAAGGAGTCAGTGAACGCAGCTTTTGA AACGTCATTAGCAGAGGGACTTAAGTTAGAGAAGAAACTCTTCTATTCAACGTTTGCCAC TGAAGACCGGAAGGAAGGCATGACCGCGTTCGTGGAGAAGAGGAAGGCCAACTTCAAAGA CCAGTAGGAACTGGCTGCCTCTGCCTTCACACCCCCACTCACAGGAGGAGAATGTAGCCT GTAGGTTTCAGAAGCAAATAAATCCTTCTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 162-323, + strand, RNAz p=0.856598 | |
| 162-323, - strand, RNAz p=0.856598 | |
| 162-320, + strand, RNAz p=0.973457 | |
| 162-320, - strand, RNAz p=0.973457 | |
| 449-555, + strand, RNAz p=0.945614 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 162-323, + strand, RNAz p=0.856598 | |
| 162-323, - strand, RNAz p=0.856598 | |
| 162-320, + strand, RNAz p=0.973457 | |
| 162-320, - strand, RNAz p=0.973457 | |
| 449-555, + strand, RNAz p=0.945614 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 123-323, gnl|bosTau2|chr26 (34994978-34995178) | |
| 123-323, gnl|canFam2|chr28 (43938065-43938236) | |
| 123-323, gnl|danRer3|chr13 (28219772-28219943) | |
| 123-323, gnl|dasNov1|scaffold_127956 (700-529) | |
| 123-323, gnl|echTel1|scaffold_44292 (1413-1584) | |
| 123-323, gnl|fr1|chrUn (165417953-165417782) | |
| 123-323, gnl|hg17|chr10 (135072943-135073114) | |
| 123-323, gnl|Hg17|chr10 (135073142-135072942) | |
| 123-323, gnl|loxAfr1|scaffold_73582 (7960-8131) | |
| 123-323, gnl|mm7|chr7 (136526721-136526892) | |
| 123-323, gnl|Mm7|chr7 (136526920-136526720) | |
| 123-323, gnl|monDom2|scaffold_41 (9614180-9614009) | |
| 123-323, gnl|oryCun1|scaffold_176317 (9905-9733) | |
| 123-323, gnl|panTro1|chr8 (137911116-137911287) | |
| 123-323, gnl|rn3|chr1 (200058044-200058215) | |
| 123-323, gnl|tetNig1|chr17 (5492203-5492374) | |
| 123-323, gnl|xenTro1|scaffold_1215 (49437-49607) | |
| 449-555, gnl|bosTau2|chr26 (34996538-34996644) | |
| 449-555, gnl|Hg17|chr10 (135071407-135071301) | |
| 449-555, gnl|Mm7|chr7 (136525582-136525461) | |
| 650-773, gnl|bosTau2|chr26 (34998321-34998444) | |
| 650-773, gnl|canFam2|chr28 (43935219-43935374) | |
| 650-773, gnl|danRer3|chr13 (28218958-28219110) | |
| 650-773, gnl|dasNov1|scaffold_127956 (4682-4525) | |
| 650-773, gnl|echTel1|scaffold_322262 (41433-41281) | |
| 650-773, gnl|fr1|chrUn (165418867-165418725) | |
| 650-773, gnl|hg17|chr10 (135068345-135068506) | |
| 650-773, gnl|Hg17|chr10 (135068484-135068361) | |
| 650-773, gnl|loxAfr1|scaffold_73582 (5117-5262) | |
| 650-773, gnl|mm7|chr7 (136523759-136523916) | |
| 650-773, gnl|Mm7|chr7 (136523897-136523774) | |
| 650-773, gnl|monDom2|scaffold_41 (9619015-9618860) | |
| 650-773, gnl|oryCun1|scaffold_176317 (11848-11699) | |
| 650-773, gnl|panTro1|chr8 (137904165-137904327) | |
| 650-773, gnl|rn3|chr1 (200055312-200055469) | |
| 650-773, gnl|tetNig1|chr17 (5491172-5491315) | |
| 842-949, gnl|bosTau2|chr26 (34984823-34984927) | |
| 842-949, gnl|Hg17|chr10 (135065318-135065213) | |
| 842-949, gnl|Mm7|chr7 (136520164-136520063) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-323, gnl|bosTau2|chr26 (34994978-34995178) | |
| 123-323, gnl|canFam2|chr28 (43938065-43938236) | |
| 123-323, gnl|danRer3|chr13 (28219772-28219943) | |
| 123-323, gnl|dasNov1|scaffold_127956 (700-529) | |
| 123-323, gnl|echTel1|scaffold_44292 (1413-1584) | |
| 123-323, gnl|fr1|chrUn (165417953-165417782) | |
| 123-323, gnl|hg17|chr10 (135072943-135073114) | |
| 123-323, gnl|Hg17|chr10 (135073142-135072942) | |
| 123-323, gnl|loxAfr1|scaffold_73582 (7960-8131) | |
| 123-323, gnl|mm7|chr7 (136526721-136526892) | |
| 123-323, gnl|Mm7|chr7 (136526920-136526720) | |
| 123-323, gnl|monDom2|scaffold_41 (9614180-9614009) | |
| 123-323, gnl|oryCun1|scaffold_176317 (9905-9733) | |
| 123-323, gnl|panTro1|chr8 (137911116-137911287) | |
| 123-323, gnl|rn3|chr1 (200058044-200058215) | |
| 123-323, gnl|tetNig1|chr17 (5492203-5492374) | |
| 123-323, gnl|xenTro1|scaffold_1215 (49437-49607) | |
| 449-555, gnl|bosTau2|chr26 (34996538-34996644) | |
| 449-555, gnl|Hg17|chr10 (135071407-135071301) | |
| 449-555, gnl|Mm7|chr7 (136525582-136525461) | |
| 650-773, gnl|bosTau2|chr26 (34998321-34998444) | |
| 650-773, gnl|canFam2|chr28 (43935219-43935374) | |
| 650-773, gnl|danRer3|chr13 (28218958-28219110) | |
| 650-773, gnl|dasNov1|scaffold_127956 (4682-4525) | |
| 650-773, gnl|echTel1|scaffold_322262 (41433-41281) | |
| 650-773, gnl|fr1|chrUn (165418867-165418725) | |
| 650-773, gnl|hg17|chr10 (135068345-135068506) | |
| 650-773, gnl|Hg17|chr10 (135068484-135068361) | |
| 650-773, gnl|loxAfr1|scaffold_73582 (5117-5262) | |
| 650-773, gnl|mm7|chr7 (136523759-136523916) | |
| 650-773, gnl|Mm7|chr7 (136523897-136523774) | |
| 650-773, gnl|monDom2|scaffold_41 (9619015-9618860) | |
| 650-773, gnl|oryCun1|scaffold_176317 (11848-11699) | |
| 650-773, gnl|panTro1|chr8 (137904165-137904327) | |
| 650-773, gnl|rn3|chr1 (200055312-200055469) | |
| 650-773, gnl|tetNig1|chr17 (5491172-5491315) | |
| 842-949, gnl|bosTau2|chr26 (34984823-34984927) | |
| 842-949, gnl|Hg17|chr10 (135065318-135065213) | |
| 842-949, gnl|Mm7|chr7 (136520164-136520063) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| cki (2.14805) | |
| cli (1.83374) | |
| sto (1.25877) | |
| che (1.22683) | |
| duo (1.03681) | |
| cut (0.849618) | |
| fli (0.811524) | |
| nmm (0.796813) | |
| cov (0.792917) | |
| elu (0.770713) | |
| hyp (0.714184) | |
| ssp (0.677599) | |
| nco (0.646935) | |
| nms (0.641574) | |
| mas (0.630915) | |
| cag (0.604778) | |
| ecc (0.575175) | |
| fty (0.527519) | |
| pro (0.512033) | |
| ese (0.506009) | |
| cje (0.495704) | |
| csp (0.483559) | |
| pgl (0.473934) | |
| jca (0.45584) | |
| pty (0.428143) | |
| lnt (0.426925) | |
| cst (0.420109) | |
| col (0.390016) | |
| med (0.348756) | |
| nje (0.33184) | |
| eli (0.303628) | |
| jej (0.296765) | |
| fat (0.294855) | |
| cte (0.29274) | |
| cga (0.279096) | |
| pla (0.267344) | |
| ute (0.265569) | |
| cbe (0.239234) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (2.14805) | |
| cli (1.83374) | |
| sto (1.25877) | |
| che (1.22683) | |
| duo (1.03681) | |
| cut (0.849618) | |
| fli (0.811524) | |
| nmm (0.796813) | |
| cov (0.792917) | |
| elu (0.770713) | |
| hyp (0.714184) | |
| ssp (0.677599) | |
| nco (0.646935) | |
| nms (0.641574) | |
| mas (0.630915) | |
| cag (0.604778) | |
| ecc (0.575175) | |
| fty (0.527519) | |
| pro (0.512033) | |
| ese (0.506009) | |
| cje (0.495704) | |
| csp (0.483559) | |
| pgl (0.473934) | |
| jca (0.45584) | |
| pty (0.428143) | |
| lnt (0.426925) | |
| cst (0.420109) | |
| col (0.390016) | |
| med (0.348756) | |
| nje (0.33184) | |
| eli (0.303628) | |
| jej (0.296765) | |
| fat (0.294855) | |
| cte (0.29274) | |
| cga (0.279096) | |
| pla (0.267344) | |
| ute (0.265569) | |
| cbe (0.239234) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |